Visualization of protein sequence space with force-directed graphs, and their application to the choice of target-template pairs for homology modelling.

Mead, Dylan J T; Lunagomez, Simón; Gatherer, Derek

Mead, Dylan J T; Lunagomez, Simón; Gatherer, Derek.

Afiliación

Mead DJT; Division of Biomedical & Life Sciences, Faculty of Health & Medicine, Lancaster University, Lancaster, LA1 4YT, UK. Electronic address: dylanmead.dm@googlemail.com.
Lunagomez S; Department of Mathematics & Statistics, Lancaster University, Lancaster, LA1 4YF, UK. Electronic address: s.lunagomez@lancaster.ac.uk.
Gatherer D; Division of Biomedical & Life Sciences, Faculty of Health & Medicine, Lancaster University, Lancaster, LA1 4YT, UK. Electronic address: d.gatherer@lancaster.ac.uk.

J Mol Graph Model ; 92: 180-191, 2019 11.

Article en En | MEDLINE | ID: mdl-31377535

Asunto(s)

Secuencia de Aminoácidos; Simulación de Dinámica Molecular; Proteínas/química; Algoritmos; Humanos; Modelos Moleculares

Palabras clave

Force-directed graphs; Fruchterman-Reingold algorithm; Homology modelling; Multidimensional scaling; Protein structure; RNA-Dependent RNA polymerase; Reverse transcriptase; Sequence space; Sequence-structure gap

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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Proteínas / Secuencia de Aminoácidos / Simulación de Dinámica Molecular Tipo de estudio: Prognostic_studies Límite: Humans Idioma: En Revista: J Mol Graph Model Asunto de la revista: BIOLOGIA MOLECULAR Año: 2019 Tipo del documento: Article Pais de publicación: Estados Unidos

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