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Validation of a Plasma-Based Comprehensive Cancer Genotyping Assay Utilizing Orthogonal Tissue- and Plasma-Based Methodologies.
Odegaard, Justin I; Vincent, John J; Mortimer, Stefanie; Vowles, James V; Ulrich, Bryan C; Banks, Kimberly C; Fairclough, Stephen R; Zill, Oliver A; Sikora, Marcin; Mokhtari, Reza; Abdueva, Diana; Nagy, Rebecca J; Lee, Christine E; Kiedrowski, Lesli A; Paweletz, Cloud P; Eltoukhy, Helmy; Lanman, Richard B; Chudova, Darya I; Talasaz, AmirAli.
Afiliación
  • Odegaard JI; Guardant Health, Redwood City, California. jodegaard@guardanthealth.com.
  • Vincent JJ; Guardant Health, Redwood City, California.
  • Mortimer S; Guardant Health, Redwood City, California.
  • Vowles JV; Guardant Health, Redwood City, California.
  • Ulrich BC; Dana-Farber Cancer Institute, Boston, Massachusetts.
  • Banks KC; Guardant Health, Redwood City, California.
  • Fairclough SR; Guardant Health, Redwood City, California.
  • Zill OA; Guardant Health, Redwood City, California.
  • Sikora M; Genentech, South San Francisco, California.
  • Mokhtari R; Guardant Health, Redwood City, California.
  • Abdueva D; Guardant Health, Redwood City, California.
  • Nagy RJ; Guardant Health, Redwood City, California.
  • Lee CE; Guardant Health, Redwood City, California.
  • Kiedrowski LA; Guardant Health, Redwood City, California.
  • Paweletz CP; Guardant Health, Redwood City, California.
  • Eltoukhy H; Dana-Farber Cancer Institute, Boston, Massachusetts.
  • Lanman RB; Guardant Health, Redwood City, California.
  • Chudova DI; Guardant Health, Redwood City, California.
  • Talasaz A; Guardant Health, Redwood City, California.
Clin Cancer Res ; 24(15): 3539-3549, 2018 08 01.
Article en En | MEDLINE | ID: mdl-29691297
Purpose: To analytically and clinically validate a circulating cell-free tumor DNA sequencing test for comprehensive tumor genotyping and demonstrate its clinical feasibility.Experimental Design: Analytic validation was conducted according to established principles and guidelines. Blood-to-blood clinical validation comprised blinded external comparison with clinical droplet digital PCR across 222 consecutive biomarker-positive clinical samples. Blood-to-tissue clinical validation comprised comparison of digital sequencing calls to those documented in the medical record of 543 consecutive lung cancer patients. Clinical experience was reported from 10,593 consecutive clinical samples.Results: Digital sequencing technology enabled variant detection down to 0.02% to 0.04% allelic fraction/2.12 copies with ≤0.3%/2.24-2.76 copies 95% limits of detection while maintaining high specificity [prevalence-adjusted positive predictive values (PPV) >98%]. Clinical validation using orthogonal plasma- and tissue-based clinical genotyping across >750 patients demonstrated high accuracy and specificity [positive percent agreement (PPAs) and negative percent agreement (NPAs) >99% and PPVs 92%-100%]. Clinical use in 10,593 advanced adult solid tumor patients demonstrated high feasibility (>99.6% technical success rate) and clinical sensitivity (85.9%), with high potential actionability (16.7% with FDA-approved on-label treatment options; 72.0% with treatment or trial recommendations), particularly in non-small cell lung cancer, where 34.5% of patient samples comprised a directly targetable standard-of-care biomarker.Conclusions: High concordance with orthogonal clinical plasma- and tissue-based genotyping methods supports the clinical accuracy of digital sequencing across all four types of targetable genomic alterations. Digital sequencing's clinical applicability is further supported by high rates of technical success and biomarker target discovery. Clin Cancer Res; 24(15); 3539-49. ©2018 AACR.
Asunto(s)

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genómica / Ácidos Nucleicos Libres de Células / ADN Tumoral Circulante / Neoplasias Tipo de estudio: Guideline / Risk_factors_studies Límite: Female / Humans / Male Idioma: En Revista: Clin Cancer Res Asunto de la revista: NEOPLASIAS Año: 2018 Tipo del documento: Article Pais de publicación: Estados Unidos

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genómica / Ácidos Nucleicos Libres de Células / ADN Tumoral Circulante / Neoplasias Tipo de estudio: Guideline / Risk_factors_studies Límite: Female / Humans / Male Idioma: En Revista: Clin Cancer Res Asunto de la revista: NEOPLASIAS Año: 2018 Tipo del documento: Article Pais de publicación: Estados Unidos