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Clinical value of miR-198-5p in lung squamous cell carcinoma assessed using microarray and RT-qPCR.
Liang, Yue-Ya; Huang, Jia-Cheng; Tang, Rui-Xue; Chen, Wen-Jie; Chen, Peng; Cen, Wei-Luan; Shi, Ke; Gao, Li; Gao, Xiang; Liu, An-Gui; Peng, Xiao-Tong; Chen, Gang; Huang, Su-Ning; Fang, Ye-Ying; Gu, Yong-Yao.
Afiliación
  • Liang YY; Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
  • Huang JC; Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
  • Tang RX; Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
  • Chen WJ; Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
  • Chen P; Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
  • Cen WL; Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
  • Shi K; Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
  • Gao L; Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
  • Gao X; Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
  • Liu AG; Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
  • Peng XT; Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
  • Chen G; Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
  • Huang SN; Department of Radiotherapy, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
  • Fang YY; Department of Radiotherapy, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China. fangyeying2010@aliyun.com.
  • Gu YY; Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China. gyy_613@sina.com.
World J Surg Oncol ; 16(1): 22, 2018 Feb 02.
Article en En | MEDLINE | ID: mdl-29394946
BACKGROUND: To examine the clinical value of miR-198-5p in lung squamous cell carcinoma (LUSC). METHODS: Gene Expression Omnibus (GEO) microarray datasets were used to explore the miR-198-5p expression and its diagnostic value in LUSC. Real-time reverse transcription quantitative polymerase chain reaction was used to evaluate the expression of miR-198-5p in 23 formalin-fixed, paraffin-embedded (FFPE) LUSC tissues and corresponding non-cancerous tissues. The correlation between miR-198-5p expression and clinic pathological features was assessed. Meanwhile, putative target messenger RNAs of miR-198-5p were identified based on the analysis of differentially expressed genes in the Cancer Genome Atlas (TCGA) and 12 miRNA prediction tools. Subsequently, the putative target genes were sent to Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses. RESULTS: MiR-198-5p was low expressed in LUSC tissues. The combined standard mean difference (SMD) values of miR-198-5p expression based on GEO datasets were - 0.30 (95% confidence interval (CI) - 0.54, - 0.06) and - 0.39 (95% CI - 0.83, 0.05) using fixed effect model and random effect model, respectively. The sensitivity and specificity were not sufficiently high, as the area under the curve (AUC) was 0.7749 (Q* = 0.7143) based on summarized receiver operating characteristic (SROC) curves constructed using GEO datasets. Based on the in-house RT-qPCR, miR-198-5p expression was 4.3826 ± 1.7660 in LUSC tissues and 4.4522 ± 1.8263 in adjacent normal tissues (P = 0.885). The expression of miR-198-5p was significantly higher in patients with early TNM stages (I-II) than that in cases with advanced TNM stages (III-IV) (5.4400 ± 1.5277 vs 3.5690 ± 1.5228, P = 0.008). Continuous variable-based meta-analysis of GEO and PCR data displayed the SMD values of - 0.26 (95% CI - 0.48, - 0.04) and - 0.34 (95% CI - 0.71, 0.04) based on fixed and random effect models, respectively. As for the diagnostic value of miR-198-5p, the AUC based on the SROC curve using GEO and PCR data was 0.7351 (Q* = 0.6812). In total, 542 genes were identified as the targets of miR-198-5p. The most enriched Gene Ontology terms were epidermis development among biological processes, cell junction among cellular components, and protein dimerization activity among molecule functions. The pathway of non-small cell lung cancer was the most significant pathway identified using Kyoto Encyclopedia of Genes and Genomes analysis. CONCLUSION: The expression of miR-198-5p is related to the TNM stage. Thus, miR-198-5p might play an important role via its target genes in LUSC.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Carcinoma de Células Escamosas / Biomarcadores de Tumor / Carcinoma de Pulmón de Células no Pequeñas / Perfilación de la Expresión Génica / MicroARNs / Reacción en Cadena en Tiempo Real de la Polimerasa / Neoplasias Pulmonares Tipo de estudio: Prognostic_studies Límite: Female / Humans / Male / Middle aged Idioma: En Revista: World J Surg Oncol Año: 2018 Tipo del documento: Article Pais de publicación: Reino Unido

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Carcinoma de Células Escamosas / Biomarcadores de Tumor / Carcinoma de Pulmón de Células no Pequeñas / Perfilación de la Expresión Génica / MicroARNs / Reacción en Cadena en Tiempo Real de la Polimerasa / Neoplasias Pulmonares Tipo de estudio: Prognostic_studies Límite: Female / Humans / Male / Middle aged Idioma: En Revista: World J Surg Oncol Año: 2018 Tipo del documento: Article Pais de publicación: Reino Unido