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ASAR: visual analysis of metagenomes in R.
Orakov, Askarbek N; Sakenova, Nazgul K; Sorokin, Anatoly; Goryanin, Igor I.
Afiliación
  • Orakov AN; Biological Systems Unit, Okinawa Institute of Science and Technology, Onna-son 904-0412, Japan.
  • Sakenova NK; Department of Biology, School of Science and Technology, Nazarbayev University, Astana 010000, Kazakhstan.
  • Sorokin A; Biological Systems Unit, Okinawa Institute of Science and Technology, Onna-son 904-0412, Japan.
  • Goryanin II; Department of Biology, School of Science and Technology, Nazarbayev University, Astana 010000, Kazakhstan.
Bioinformatics ; 34(8): 1404-1405, 2018 04 15.
Article en En | MEDLINE | ID: mdl-29211828
Motivation: Functional and taxonomic analyses are critical steps in understanding interspecific interactions within microbial communities. Currently, such analyses are run separately, which complicates interpretation of results. Here we present the ASAR interactive tool for simultaneous analysis of metagenomic data in three dimensions: taxonomy, function, metagenome. Results: An interactive data analysis tool for selection, aggregation and visualization of metagenomic data is presented. Functional analysis with a SEED hierarchy and pathway diagram based on KEGG orthology based upon MG-RAST annotation results is available. Availability and implementation: Source code of the ASAR is accessible at GitHub (https://github.com/Askarbek-orakov/ASAR). Contact: askarbek.orakov@nu.edu.kz or goryanin@gmail.com.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Programas Informáticos / Metagenómica / Microbiota Idioma: En Revista: Bioinformatics Asunto de la revista: INFORMATICA MEDICA Año: 2018 Tipo del documento: Article País de afiliación: Japón Pais de publicación: Reino Unido
Texto completo
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Programas Informáticos / Metagenómica / Microbiota Idioma: En Revista: Bioinformatics Asunto de la revista: INFORMATICA MEDICA Año: 2018 Tipo del documento: Article País de afiliación: Japón Pais de publicación: Reino Unido