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PRGdb 3.0: a comprehensive platform for prediction and analysis of plant disease resistance genes.
Osuna-Cruz, Cristina M; Paytuvi-Gallart, Andreu; Di Donato, Antimo; Sundesha, Vicky; Andolfo, Giuseppe; Aiese Cigliano, Riccardo; Sanseverino, Walter; Ercolano, Maria R.
Afiliación
  • Osuna-Cruz CM; Sequentia Biotech SL, Calle Comte D'Urgell 240, 08036 Barcelona, Spain.
  • Paytuvi-Gallart A; Sequentia Biotech SL, Calle Comte D'Urgell 240, 08036 Barcelona, Spain.
  • Di Donato A; Dipartimento di Agraria, Università di Napoli 'Federico II', Via Università 100, 80055 Portici, Italy.
  • Sundesha V; Sequentia Biotech SL, Calle Comte D'Urgell 240, 08036 Barcelona, Spain.
  • Andolfo G; Dipartimento di Agraria, Università di Napoli 'Federico II', Via Università 100, 80055 Portici, Italy.
  • Aiese Cigliano R; Sequentia Biotech SL, Calle Comte D'Urgell 240, 08036 Barcelona, Spain.
  • Sanseverino W; Sequentia Biotech SL, Calle Comte D'Urgell 240, 08036 Barcelona, Spain.
  • Ercolano MR; Dipartimento di Agraria, Università di Napoli 'Federico II', Via Università 100, 80055 Portici, Italy.
Nucleic Acids Res ; 46(D1): D1197-D1201, 2018 01 04.
Article en En | MEDLINE | ID: mdl-29156057
The Plant Resistance Genes database (PRGdb; http://prgdb.org) has been redesigned with a new user interface, new sections, new tools and new data for genetic improvement, allowing easy access not only to the plant science research community but also to breeders who want to improve plant disease resistance. The home page offers an overview of easy-to-read search boxes that streamline data queries and directly show plant species for which data from candidate or cloned genes have been collected. Bulk data files and curated resistance gene annotations are made available for each plant species hosted. The new Gene Model view offers detailed information on each cloned resistance gene structure to highlight shared attributes with other genes. PRGdb 3.0 offers 153 reference resistance genes and 177 072 annotated candidate Pathogen Receptor Genes (PRGs). Compared to the previous release, the number of putative genes has been increased from 106 to 177 K from 76 sequenced Viridiplantae and algae genomes. The DRAGO 2 tool, which automatically annotates and predicts (PRGs) from DNA and amino acid with high accuracy and sensitivity, has been added. BLAST search has been implemented to offer users the opportunity to annotate and compare their own sequences. The improved section on plant diseases displays useful information linked to genes and genomes to connect complementary data and better address specific needs. Through, a revised and enlarged collection of data, the development of new tools and a renewed portal, PRGdb 3.0 engages the plant science community in developing a consensus plan to improve knowledge and strategies to fight diseases that afflict main crops and other plants.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Enfermedades de las Plantas / Programas Informáticos / Viridiplantae / Resistencia a la Enfermedad Tipo de estudio: Prognostic_studies / Risk_factors_studies Idioma: En Revista: Nucleic Acids Res Año: 2018 Tipo del documento: Article País de afiliación: España Pais de publicación: Reino Unido
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Enfermedades de las Plantas / Programas Informáticos / Viridiplantae / Resistencia a la Enfermedad Tipo de estudio: Prognostic_studies / Risk_factors_studies Idioma: En Revista: Nucleic Acids Res Año: 2018 Tipo del documento: Article País de afiliación: España Pais de publicación: Reino Unido