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Strategies in relative and absolute quantitative mass spectrometry based proteomics.
Lindemann, Claudia; Thomanek, Nikolas; Hundt, Franziska; Lerari, Thilo; Meyer, Helmut E; Wolters, Dirk; Marcus, Katrin.
Afiliación
  • Lindemann C; Ruhr-University Bochum, Medizinisches Proteom-Center, Universitätsstraße 150, D-44801 Bochum.
  • Thomanek N; Ruhr-University Bochum, Medizinisches Proteom-Center, Universitätsstraße 150, D-44801 Bochum.
  • Hundt F; Ruhr-University Bochum, Biomolecular Mass Spectrometry, Universitätsstraße 150, D-44801 Bochum.
  • Lerari T; Ruhr-University Bochum, Medizinisches Proteom-Center, Universitätsstraße 150, D-44801 Bochum.
  • Meyer HE; Ruhr-University Bochum, Medizinisches Proteom-Center, Universitätsstraße 150, D-44801 Bochum.
  • Wolters D; Ruhr-University Bochum, Biomolecular Mass Spectrometry, Universitätsstraße 150, D-44801 Bochum.
  • Marcus K; Ruhr-University Bochum, Medizinisches Proteom-Center, Universitätsstraße 150, D-44801 Bochum.
Biol Chem ; 398(5-6): 687-699, 2017 05 01.
Article en En | MEDLINE | ID: mdl-28282288
Quantitative mass spectrometry approaches are used for absolute and relative quantification in global proteome studies. To date, relative and absolute quantification techniques are available that differ in quantification accuracy, proteome coverage, complexity and robustness. This review focuses on most common relative or absolute quantification strategies exemplified by three experimental studies. A label-free relative quantification approach was performed for the investigation of the membrane proteome of sensory cilia to the depth of olfactory receptors in Mus musculus. A SILAC-based relative quantification approach was successfully applied for the identification of core components and transient interactors of the peroxisomal importomer in Saccharomyces cerevisiae. Furthermore, AQUA using stable isotopes was exemplified to unraveling the prenylome influenced by novel prenyltransferase inhibitors. Characteristic enrichment and fragmentation strategies for a robust quantification of the prenylome are also summarized.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Espectrometría de Masas / Proteómica Tipo de estudio: Prognostic_studies Límite: Animals / Humans Idioma: En Revista: Biol Chem Asunto de la revista: BIOQUIMICA Año: 2017 Tipo del documento: Article Pais de publicación: Alemania
Texto completo
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Espectrometría de Masas / Proteómica Tipo de estudio: Prognostic_studies Límite: Animals / Humans Idioma: En Revista: Biol Chem Asunto de la revista: BIOQUIMICA Año: 2017 Tipo del documento: Article Pais de publicación: Alemania