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The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.
Bertioli, David John; Cannon, Steven B; Froenicke, Lutz; Huang, Guodong; Farmer, Andrew D; Cannon, Ethalinda K S; Liu, Xin; Gao, Dongying; Clevenger, Josh; Dash, Sudhansu; Ren, Longhui; Moretzsohn, Márcio C; Shirasawa, Kenta; Huang, Wei; Vidigal, Bruna; Abernathy, Brian; Chu, Ye; Niederhuth, Chad E; Umale, Pooja; Araújo, Ana Cláudia G; Kozik, Alexander; Kim, Kyung Do; Burow, Mark D; Varshney, Rajeev K; Wang, Xingjun; Zhang, Xinyou; Barkley, Noelle; Guimarães, Patrícia M; Isobe, Sachiko; Guo, Baozhu; Liao, Boshou; Stalker, H Thomas; Schmitz, Robert J; Scheffler, Brian E; Leal-Bertioli, Soraya C M; Xun, Xu; Jackson, Scott A; Michelmore, Richard; Ozias-Akins, Peggy.
Afiliación
  • Bertioli DJ; Institute of Biological Sciences, University of Brasília, Brasília, Brazil.
  • Cannon SB; Center for Applied Genetic Technologies, University of Georgia, Athens, Georgia, USA.
  • Froenicke L; Corn Insects and Crop Genetics Research Unit, US Department of Agriculture-Agricultural Research Service, Ames, Iowa, USA.
  • Huang G; Genome Center, University of California, Davis, Davis, California, USA.
  • Farmer AD; Department of Plant Sciences, University of California, Davis, Davis, California, USA.
  • Cannon EK; BGI-Shenzhen, Shenzhen, China.
  • Liu X; National Center for Genome Resources, Santa Fe, New Mexico, USA.
  • Gao D; Department of Computer Science, Iowa State University, Ames, Iowa, USA.
  • Clevenger J; BGI-Shenzhen, Shenzhen, China.
  • Dash S; Center for Applied Genetic Technologies, University of Georgia, Athens, Georgia, USA.
  • Ren L; Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Tifton, Georgia, USA.
  • Moretzsohn MC; National Center for Genome Resources, Santa Fe, New Mexico, USA.
  • Shirasawa K; Interdepartmental Genetics Graduate Program, Iowa State University, Ames, Iowa, USA.
  • Huang W; Embrapa Genetic Resources and Biotechnology, Brasília, Brazil.
  • Vidigal B; Kazusa DNA Research Institute, Department of Frontier Research, Kisarazu, Japan.
  • Abernathy B; Department of Agronomy, Iowa State University, Ames, Iowa, USA.
  • Chu Y; Institute of Biological Sciences, University of Brasília, Brasília, Brazil.
  • Niederhuth CE; Embrapa Genetic Resources and Biotechnology, Brasília, Brazil.
  • Umale P; Center for Applied Genetic Technologies, University of Georgia, Athens, Georgia, USA.
  • Araújo AC; Department of Horticulture, University of Georgia, Tifton, Georgia, USA.
  • Kozik A; Department of Genetics, University of Georgia, Athens, Georgia, USA.
  • Kim KD; National Center for Genome Resources, Santa Fe, New Mexico, USA.
  • Burow MD; Embrapa Genetic Resources and Biotechnology, Brasília, Brazil.
  • Varshney RK; Genome Center, University of California, Davis, Davis, California, USA.
  • Wang X; Center for Applied Genetic Technologies, University of Georgia, Athens, Georgia, USA.
  • Zhang X; Texas A&M AgriLife Research, Lubbock, Texas, USA.
  • Barkley N; Department of Plant and Soil Science, Texas Tech University, Lubbock, Texas, USA.
  • Guimarães PM; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
  • Isobe S; Shandong Academy of Agricultural Sciences, Biotechnology Research Center, Jinan, China.
  • Guo B; Henan Academy of Agricultural Sciences, Zhengzhou, China.
  • Liao B; Plant Genetic Resources Conservation Unit, US Department of Agriculture-Agricultural Research Service, Griffin, Georgia, USA.
  • Stalker HT; International Potato Center, Lima, Peru.
  • Schmitz RJ; Embrapa Genetic Resources and Biotechnology, Brasília, Brazil.
  • Scheffler BE; Kazusa DNA Research Institute, Department of Frontier Research, Kisarazu, Japan.
  • Leal-Bertioli SC; Crop Protection and Management Research Unit, US Department of Agriculture-Agricultural Research Service, Tifton, Georgia, USA.
  • Xun X; Chinese Academy of Agricultural Sciences, Oil Crops Research Institute, Wuhan, China.
  • Jackson SA; Department of Crop Science, North Carolina State University, Raleigh, North Carolina, USA.
  • Michelmore R; Department of Genetics, University of Georgia, Athens, Georgia, USA.
  • Ozias-Akins P; Middle Southern Area Genomics Laboratory, US Department of Agriculture-Agricultural Research Service, Stoneville, Mississippi, USA.
Nat Genet ; 48(4): 438-46, 2016 Apr.
Article en En | MEDLINE | ID: mdl-26901068
Cultivated peanut (Arachis hypogaea) is an allotetraploid with closely related subgenomes of a total size of ∼2.7 Gb. This makes the assembly of chromosomal pseudomolecules very challenging. As a foundation to understanding the genome of cultivated peanut, we report the genome sequences of its diploid ancestors (Arachis duranensis and Arachis ipaensis). We show that these genomes are similar to cultivated peanut's A and B subgenomes and use them to identify candidate disease resistance genes, to guide tetraploid transcript assemblies and to detect genetic exchange between cultivated peanut's subgenomes. On the basis of remarkably high DNA identity of the A. ipaensis genome and the B subgenome of cultivated peanut and biogeographic evidence, we conclude that A. ipaensis may be a direct descendant of the same population that contributed the B subgenome to cultivated peanut.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Arachis / Genoma de Planta Idioma: En Revista: Nat Genet Asunto de la revista: GENETICA MEDICA Año: 2016 Tipo del documento: Article País de afiliación: Brasil Pais de publicación: Estados Unidos
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Arachis / Genoma de Planta Idioma: En Revista: Nat Genet Asunto de la revista: GENETICA MEDICA Año: 2016 Tipo del documento: Article País de afiliación: Brasil Pais de publicación: Estados Unidos