Complete chloroplast genomes of two Miscanthus species.

Nah, Gyoungju; Im, Ji-Hoon; Lim, Soo-Hyun; Kim, Kyunghee; Choi, Ah Young; Yook, Min Jung; Kim, Soonok; Kim, Changmu; Kim, Do-Soon

Nah, Gyoungju; Im, Ji-Hoon; Lim, Soo-Hyun; Kim, Kyunghee; Choi, Ah Young; Yook, Min Jung; Kim, Soonok; Kim, Changmu; Kim, Do-Soon.

Afiliación

Nah G; a Department of Plant Science , College of Agriculture and Life Sciences, Research Institute of Agriculture and Life Sciences, Seoul National University , Seoul , Korea.
Im JH; a Department of Plant Science , College of Agriculture and Life Sciences, Research Institute of Agriculture and Life Sciences, Seoul National University , Seoul , Korea.
Lim SH; a Department of Plant Science , College of Agriculture and Life Sciences, Research Institute of Agriculture and Life Sciences, Seoul National University , Seoul , Korea.
Kim K; a Department of Plant Science , College of Agriculture and Life Sciences, Research Institute of Agriculture and Life Sciences, Seoul National University , Seoul , Korea.
Choi AY; b College of Agriculture and Life Sciences, National Instrumentation Center for Environment Management (NICEM), Seoul National University , Seoul , Korea , and.
Yook MJ; a Department of Plant Science , College of Agriculture and Life Sciences, Research Institute of Agriculture and Life Sciences, Seoul National University , Seoul , Korea.
Kim S; c Biological and Genetic Resources Assessment Division, National Institute of Biological Resources , Incheon , Korea.
Kim C; c Biological and Genetic Resources Assessment Division, National Institute of Biological Resources , Incheon , Korea.
Kim DS; a Department of Plant Science , College of Agriculture and Life Sciences, Research Institute of Agriculture and Life Sciences, Seoul National University , Seoul , Korea.

Mitochondrial DNA A DNA Mapp Seq Anal ; 27(6): 4359-4360, 2016 11.

Article en En | MEDLINE | ID: mdl-26465710

RESUMEN

The complete chloroplast (cp) genomes of two Miscanthus species, M. sinensis and M. sacchariflorus, were sequenced and investigated for genes, genome size variation, and polymorphisms. There are 170 genes in both cp genomes, consisting of 122 mRNA genes (84 protein-coding genes and 38 hypothetical genes), 40 tRNA genes, and 8 rRNA genes. The cp genome contains two inverted repeat (IR) regions, separated by large single copy (LSC) region and small single copy (SSC) region. Indels were responsible for 40 bp difference in cp genome size in two species. In addition, we established phylogenetic relationship with other monocot cp genomes, and estimated divergence time. The two Miscanthus species clustered together among other C4 monocot species and the divergence time of two Miscanthus species was approximately 0.5 1-0.84 Mya.

Asunto(s)

Genoma del Cloroplasto/genética; Genoma Mitocondrial/genética; Poaceae/genética; Composición de Base/genética; Secuencia de Bases/genética; Evolución Biológica; Cloroplastos/genética; ADN de Cloroplastos/genética; Orden Génico; Genes Mitocondriales/genética; Genes de Plantas/genética; Genoma/genética; Genoma de Planta/genética; Mitocondrias/genética; Filogenia; Análisis de Secuencia de ADN/métodos

Palabras clave

Chloroplast genome; divergence time, Miscanthus; next-generation sequencing; phylogeny

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Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma Mitocondrial / Genoma del Cloroplasto / Poaceae Idioma: En Revista: Mitochondrial DNA A DNA Mapp Seq Anal Año: 2016 Tipo del documento: Article Pais de publicación: Reino Unido

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