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Cytoscape: the network visualization tool for GenomeSpace workflows.
Demchak, Barry; Hull, Tim; Reich, Michael; Liefeld, Ted; Smoot, Michael; Ideker, Trey; Mesirov, Jill P.
Afiliación
  • Demchak B; Department of Medicine, University of California, San Diego, La Jolla, 92093-0688, USA.
  • Hull T; Department of Medicine, University of California, San Diego, La Jolla, 92093-0688, USA.
  • Reich M; Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, 02142, USA.
  • Liefeld T; Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, 02142, USA.
  • Smoot M; Qualcomm, Inc, San Diego, 92121, USA.
  • Ideker T; Department of Medicine, University of California, San Diego, La Jolla, 92093-0688, USA.
  • Mesirov JP; Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, 02142, USA.
F1000Res ; 3: 151, 2014.
Article en En | MEDLINE | ID: mdl-25165537
Modern genomic analysis often requires workflows incorporating multiple best-of-breed tools. GenomeSpace is a web-based visual workbench that combines a selection of these tools with mechanisms that create data flows between them. One such tool is Cytoscape 3, a popular application that enables analysis and visualization of graph-oriented genomic networks. As Cytoscape runs on the desktop, and not in a web browser, integrating it into GenomeSpace required special care in creating a seamless user experience and enabling appropriate data flows. In this paper, we present the design and operation of the Cytoscape GenomeSpace app, which accomplishes this integration, thereby providing critical analysis and visualization functionality for GenomeSpace users. It has been downloaded over 850 times since the release of its first version in September, 2013.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: F1000Res Año: 2014 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Reino Unido
Texto completo
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Imprimir
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PubMed Links
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: F1000Res Año: 2014 Tipo del documento: Article País de afiliación: Estados Unidos Pais de publicación: Reino Unido