In order to improve sediment handling following dredging operations, this study aims to statistically derive ranges of distribution for certain microbiological parameters, according to four environmental types inspired by Italian legislation on seaports: ports of international/national importance, ports of regional importance, port channels in brackish environments, and marine coastal areas. A national database was developed using microbiological data from technical reports available at the Italian Ministry of Environment and National Institute of Environmental Protection and Research (ISPRA) for the period 1990-2008. The parameters considered were total coliform bacteria, faecal coliform bacteria, Escherichia coli, enterococci, sulfite-reducing clostridia (SRC), total bacterial counts at 22 °C and at 37 °C, and fungi. The data were statistically analyzed: (1) to verify the correspondence with the identified environmental types and rank them according to the concentration gradient and (2) to describe the data distribution in order to obtain reference ranges typical for each parameter/environmental type. The four environmental types considered were clearly different for enterococci, SRC, and fungi, highlighting a correspondence with Italian legislation. For the remaining parameters, at least two environmental types were merged. In general, the less contaminated environments were small ports and relatively unimpacted coastal areas. The ranges defined for relatively clean coastal areas can be considered a target for other areas both from an environmental point of view and for the sediment management implications. These values could be used as a comparison in environmental surveys addressing marine or brackish sediment handling and may represent a future line of evidence for the assessment of overall sediment quality.