Novel polymerase chain reaction primers for the specific detection of bacterial copper P-type ATPases gene sequences in environmental isolates and metagenomic DNA.

De la Iglesia, R; Valenzuela-Heredia, D; Pavissich, J P; Freyhoffer, S; Andrade, S; Correa, J A; González, B

De la Iglesia, R; Valenzuela-Heredia, D; Pavissich, J P; Freyhoffer, S; Andrade, S; Correa, J A; González, B.

Afiliación

De la Iglesia R; Departamento de Genética Molecular y Microbiología and Millennium Nucleus on Microbial Ecology and Environmental Microbiology and Biotechnology, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile.

Lett Appl Microbiol ; 50(6): 552-62, 2010 Jun 01.

Article en En | MEDLINE | ID: mdl-20337927

RESUMEN

AIMS: In the last decades, the worldwide increase in copper wastes release by industrial activities like mining has driven environmental metal contents to toxic levels. For this reason, the study of the biological copper-resistance mechanisms in natural environments is important. Therefore, an appropriate molecular tool for the detection and tracking of copper-resistance genes was developed. METHODS AND RESULTS: In this work, we designed a PCR primer pair to specifically detect copper P-type ATPases gene sequences. These PCR primers were tested in bacterial isolates and metagenomic DNA from intertidal marine environments impacted by copper pollution. As well, T-RFLP fingerprinting of these gene sequences was used to compare the genetic composition of such genes in microbial communities, in normal and copper-polluted coastal environments. New copper P-type ATPases gene sequences were found, and a high degree of change in the genetic composition because of copper exposure was also determined. CONCLUSIONS: This PCR based method is useful to track bacterial copper-resistance gene sequences in the environment. SIGNIFICANCE AND IMPACT OF THE STUDY: This study is the first to report the design and use of a PCR primer pair as a molecular marker to track bacterial copper-resistance determinants, providing an excellent tool for long-term analysis of environmental communities exposed to metal pollution.

Asunto(s)

Adenosina Trifosfatasas/genética; Bacterias/aislamiento & purificación; Proteínas Bacterianas/genética; Cartilla de ADN/genética; Microbiología Ambiental; Metagenómica; Reacción en Cadena de la Polimerasa/métodos; Bacterias/clasificación; Bacterias/enzimología; Bacterias/genética; Cobre/metabolismo; ADN Bacteriano/genética; Datos de Secuencia Molecular; Filogenia; Especificidad de la Especie

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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Bacterias / Proteínas Bacterianas / Reacción en Cadena de la Polimerasa / Adenosina Trifosfatasas / Cartilla de ADN / Microbiología Ambiental / Metagenómica Tipo de estudio: Diagnostic_studies / Evaluation_studies Idioma: En Revista: Lett Appl Microbiol Asunto de la revista: MICROBIOLOGIA Año: 2010 Tipo del documento: Article País de afiliación: Chile Pais de publicación: Reino Unido

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