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Microbial life forms are among the most ubiquitous on Earth, yet many remain understudied in Caribbean estuaries. We report on the prokaryote community composition of the Urabá Estuary in the Colombian Caribbean using 16S rRNA gene-transcript sequencing. We also assessed potential functional diversity through 38 metabolic traits inferred from 16S rRNA gene data. Water samples were collected from six sampling stations at two depths with contrasting light-penetration conditions along an approximately 100 km transect in the Gulf of Urabá in December 2019. Non-metric multidimensional scaling analysis grouped the samples into two distinct clusters along the transect and between depths. The primary variables influencing the prokaryote community composition were the sampling station, depth, salinity, and dissolved oxygen levels. Twenty percent of genera (i.e., 58 out 285) account for 95% of the differences between groups along the transect and among depths. All of the 38 metabolic traits studied showed some significant relationship with the tested environmental variables, especially salinity and except with temperature. Another non-metric multidimensional scaling analysis, based on community-weighted mean of traits, also grouped the samples in two clusters along the transect and over depth. Biodiversity facets, such as richness, evenness, and redundancy, indicated that environmental variations-stemming from river discharges-introduce an imbalance in functional diversity between surface prokaryote communities closer to the estuary's head and bottom communities closer to the ocean. Our research broadens the use of 16S rRNA gene transcripts beyond mere taxonomic assignments, furthering the field of trait-based prokaryote community ecology in transitional aquatic ecosystems.IMPORTANCEThe resilience of a dynamic ecosystem is directly tied to the ability of its microbes to navigate environmental gradients. This study delves into the changes in prokaryote community composition and functional diversity within the Urabá Estuary (Colombian Caribbean) for the first time. We integrate data from 16S rRNA gene transcripts (taxonomic and functional) with environmental variability to gain an understanding of this under-researched ecosystem using a multi-faceted macroecological framework. We found that significant shifts in prokaryote composition and in primary changes in functional diversity were influenced by physical-chemical fluctuations across the estuary's environmental gradient. Furthermore, we identified a potential disparity in functional diversity. Near-surface communities closer to the estuary's head exhibited differences compared to deeper communities situated farther away. Our research serves as a roadmap for posing new inquiries about the potential functional diversity of prokaryote communities in highly dynamic ecosystems, pushing forward the domain of multi-trait-based prokaryote community ecology.

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DNA metabarcoding and stable isotope analysis have significantly advanced our understanding of marine trophic ecology, aiding systematic research on foraging habits and species conservation. In this study, we employed these methods to analyse faecal and blood samples, respectively, to compare the trophic ecology of two Red-billed Tropicbird (Phaethonaethereus; Linnaeus, 1758) colonies on Mexican islands in the Pacific. Trophic patterns among different breeding stages were also examined at both colonies. Dietary analysis reveals a preference for epipelagic fish, cephalopods, and small crustaceans, with variations between colonies and breeding stages. Isotopic values (δ15N and δ13C) align with DNA metabarcoding results, with wider niches during incubation stages. Differences in diet are linked to environmental conditions and trophic plasticity among breeding stages, influenced by changing physiological requirements and prey availability. Variations in dietary profiles reflect contrasting environmental conditions affecting local prey availability.

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Carbon export efficiency is a key indicator of the capacity of biological pump, but the controlling mechanism of the efficiency remains unclear. Our findings revealed that interannual variations in seasonal carbon export efficiency are determined by direct factors including riverine nutrient fluxes, stratification, residence time. These direct factors are finally attributed to two indirect factors (human activities and climate change). We quantified the absolute contributions of direct and indirect factors to carbon export efficiency. The results showed that the carbon export efficiency in the northern Gulf of Mexico in spring (summer; autumn; winter) was driven by human activities, which accounted for an absolute contribution of 16.02% (7.20%; 4.00%; 8.49%, respectively) through riverine nutrient fluxes, and by climate change, which accounted for an absolute contribution of 33.51% (21.43%; 25.73%; 15.80%, respectively) through stratification and water residence time. Moreover, carbon export efficiency could be predicted by MEI of 8 months earlier.

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Trypanorhynch cestode larvae were found parasitizing specimens of dusky flounder Syacium papillosum (Linnaeus, 1758) in the Southeastern Gulf of Mexico (s-GoM). Plerocercoids were recovered from a total of 194 flatfish, embedded in the intestine and stomach wall. Trypanorhynch were identified using morphology and a molecular phylogeny using newly sequenced partial 28S (region D1-D3) ribosomal DNA in combination with data derived from other species of trypanorhynchs available from GenBank. Larvae representing three genera of trypanorhynch cestodes, Nybelinia Poche, 1926; Kotorella Euzet & Radujkovic, 1989 and Oncomegas Dollfus, 1929 were found in dusky flounder specimens in the s-GoM. These plerocercoids represent six species: Nybelinia sp. 1, Nybelinia sp. 2, Nybelinia sp. 3, Nybelinia sp. 4, Kotorella pronosoma (Stossich, 1901) and Oncomegas wageneri (Linton, 1890) Dollfus, 1929. All cestode specimens in this study represent new locality records for their respective species.

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Terminos Lagoon (TL), in the southern Gulf of Mexico, has been under intensive anthropogenic pressure (e.g., oil-industry development) since the 1970s. Historical changes in flux ratios of potentially toxic elements (PTEs; As, Cd, Cr, Cu, Ni, Pb, V, Zn) were, for the first time, assessed inside TL by using 210Pb-dated sediment cores. Sediments showed minor enrichments for Cd, Ni, Pb, and V. However, according to international benchmarks, the As, Cr, Cu, and Ni concentrations could pose a risk for benthic biota. Sedimentary processes involved in the accumulation of PTEs were identified through a chemometric approach. Increments in PTEs flux ratios concur with the recent (⁓50 years) and extensive land-use changes, particularly the transport and deposit of materials delivered by rivers. These findings are expected to be used in managing this crucial natural resource, the larger Mexican coastal lagoon ecosystem, to mitigate the effects of global change.

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Host phylogeny and ecological convergence are two factors thought to influence the structure of parasite communities. The aims of this study were to determine the diversity of metazoan parasites of 10 sympatric fish species of the family Carangidae from the southeastern Gulf of California, and to analyze their similarity at infracommunity and component community levels, in order to determine if the host species, particularly those congeneric with similar ecological characteristics, exhibit similar assemblages of parasites. In total, 874 fish specimens were examined and 40 parasite species were identified. The component community was composed by 21 parasite species in Caranx caninus, 20 in C. caballus, 11 in C. vinctus, five in Chloroscombrus orqueta, four in Carangoides otrynter, seven in Hemicaranx leucurus, eight in Selene brevoortii, 14 in S. peruviana, and 11 in Trachinotus rhodopus. The metazoan parasite communities of C. vinctus, Ch. orqueta, H. leucurus, and S. brevoortii are reported here for the first time. The parasite communities of the remaining six carangid species have been reported from regions other than the Gulf of California. All fish species differed significantly regarding the diversity of their parasite infracommunities. This possibly is due to different patterns of habitat use among fish species, and because of the differential host specificity among parasite taxa. Nonetheless, when the analysis was restricted to common parasite species, some fish showed similar parasite infracommunities, particularly congeners of the genus Selene as well as C. caballus and C. vinctus. The component communities of species of Selene were highly similar (>65%), but the three species of Caranx were not. This result supports the hypothesis that congeneric fish species with similar ecological filters harbor similar parasite communities. However, the difference observed between C. caninus and C. caballus suggests that these species, despite being evolutionary and ecologically related, have different physiological or immunological characteristics (compatibility filters) that may result in different parasite communities.

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Background: Parasphaerosyllis Monro, 1937 is a syllid genus, currently composed of four species: P.indica Monro, 1937 from the Arabian Sea, P.uschakovi (Chlebovitsch, 1959) from the Kurile Islands, P.ezoensis Imajima & Hartman, 1964 from Japan and P.malimalii Capa, San Martín & López, 2001 from the Pacific coast of Panama. The distribution of P.indica is circum-tropical to temperate waters, but the presence of species complexes has been suggested. In order to clarify the distribution of P.indica in many areas of the world, a re-description, based on examination of the type material, is required as a first step to a better understanding of its diagnostic features. New information: Parasphaerosyllisindica is re-described, based on holotype examination, a new species is established from the Gulf of California and Parasphaerosyllismalimalii is reported for the first time since its description in 2001. Parasphaerosyllisirregulata sp. nov. is distinguished from its congeners by the following features: 1) Palps are free at their base; 2) Two types of dorsal cirri are present: spherical to bulbous and moniliform cirri; 3) Both types of cirri are distributed irregularly. A spherical/bulbous and moniliform cirrus may appear together within the same segment (asymmetrical segment) or only a spherical/bulbous cirrus may appear in several consecutive segments (not alternating as occurs in congeners); 4) The spherical/bulbous cirri may have distal knobs with 1-3 terminal articles; and 5) Bidentate falcigers with short, sub-triangular blades with a proximal tooth slightly larger that the distal one. A taxonomic key to species of Parasphaerosyllis species is included.

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The abundance of microplastics (MPs) in the gastrointestinal tract (GT), gills (GI), and exoskeleton (EX) of Litopenaeus vannamei shrimp cultured in a commercial indoor super-intensive controlled (ISCO) system was investigated. Shrimp of 25 days (postlarvae; PL25), and one, three, five, and seven culture months were analyzed. The postlarvae PL25 MP abundance per individual and gram of PL (wet weight) was 0.2 ± 0.0 MPs and 3.5 ± 0.5 MPs/g. For L. vannamei juveniles at one, three, five, and seven culture months, the MP abundance per juvenile shrimp was 10.0 ± 0.3, 27.2 ± 1.6, 32.3 ± 3.1, and 40.3 ± 3.6 MPs/individual, respectively (expressed in MPs/g of tissue were 1.6 ± 0.1, 2.0 ± 0.2, 2.0 ± 0.3 and 1.5 ± 0.2, respectively). Fibers were the most common MP type in all shrimp age classes (42.1-68.7 %), and the predominant color was transparent (46.1-65.0 %). The MP size in all shrimp stages ranged between 15 and 4686 µm. In general, the predominant polymers identified were PE (37.4 %), NY (21.1 %), and PET (18.5 %). The MP variability through the culture cycle showed that as the age of shrimp increased, and the culture advanced the MP abundance and size also augmented. Conversely, there is a higher MP abundance in L. vannamei cultured in ISCO systems compared to shrimp cultured in traditional semi-intensive and intensive ponds and those from wild environments. The latter is probably due to the extensive use of plasticized materials (geomembrane and greenhouse installations) and their degradation, which cause a greater MP exposure to shrimp. The estimated oral MP intake by ISCO shrimp consumption was 647 MPs/capita/year, which can be 178 % more than from wild shrimp.

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We assessed the tolerance, safety margins, and behavioral responses to extreme conditions of the mangrove fiddler crab Leptuca speciosa during a heatwave event (May of 2022), in the Yucatán Peninsula, Mexico. In the field, L. speciosa demonstrated aggregation behavior, congregating in areas that were above the water level to escape the extreme water conditions. In the laboratory, we determined that the upper critical thermal limits (UT99) ranged from 40.2 °C and 42 °C. For salinity, the lethal concentration was LC99 = 39 psu. Our study showed that L. speciosa, one of the most conspicuous and resilient inhabitants of mangroves, had no safety margin and low tolerance to the climatic conditions as measured in the heatwave, and displayed a protective behavior. Considering that the frequency and intensity of heatwaves have been predicted to increase in the next few years, the combined multiple stressors effect may increase the vulnerability of mangrove organisms.

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Pelagic Sargassum in the Gulf of Mexico (GoM) plays an important role in ocean biology and ecology, yet our knowledge of its origins and transport pathways is limited. Here, using satellite observations of Sargassum areal density and ocean surface currents between 2000 and 2023, we show that large amounts of Sargassum in the GoM can either originate from the northwestern GoM or be a result of physical transport from the northwestern Caribbean Sea, both with specific transport pathways. Sargassum of the northwestern GoM can be transported to the eastern GoM by ocean currents and eddies, eventually entering the Sargasso Sea. Sargassum entering the GoM from the northwestern Caribbean Sea can be transported in three different directions, with the northward and eastward transports governed by the Loop Current System (LCS) and westward transport driven by the westward extension of the LCS, the propagation or relaying of ocean eddies, the wind-driven westward currents on the Campeche Bank with or without eddies, and the westward currents with/without currents associated with eddies in the northern/central GoM. Overall, the spatial distribution patterns of pelagic Sargassum in the GoM are strongly influenced by the LCS and relevant eddies.

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Alexandrium tamiyavanichii is a marine dinoflagellate known to produce Paralytic Shellfish Poisoning (PSP) toxin. Thus, a strain was isolated from La Paz Bay, Baja California Sur, Mexico and used to explore whether stress conditions, such as phosphorus limitation (PL) and nitrogen enrichment (NE) modulate population growth and PSP toxin production in the GSe medium. Growth kinetics showed that the PL treatment produced a 3.4-fold increase in cell density versus control at day 30 of the culture cycle. The highest PSP concentration was found in the control culture (309 fmol cell-1) on day 21. Saxitoxin (STX) was the main analog in all the treatments (> 40 % mol). In conclusion, PL and NE treatments promoted growth kinetics in the species studied but did not affect the PSP toxin production. For the first time, the present research describes A. tamiyavanichii high toxicity strain isolated from Mexican coasts relative to the South-Atlantic strains.

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Dissolved oxygen (DO) concentration is an important index of ocean systems. In this study, spatiotemporal variations in DO were analyzed in the northern Gulf of Mexico (NGM) for the period of 1992-2017. Temporal variation involves annual, monthly, and seasonal variations. The spatial scope ranged from the sea surface to 1000 m depth. The results show that: (1) DO decreased from 1992 to 2017 with a brief increase; (2) clear seasonal variation characteristics of DO were presented, and the seasonal average DO was relatively low in summer; (3) the monthly average trends of sea surface DO in different years were relatively consistent; and (4) with increasing water depth from seawater surface to 1000 m, the average DO of 1992 to 2017 tended to decrease and then increase. The results aim at shedding some light on the assessment of DO change in the NGM over the past quarter century.

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The whale shark (Rhincodon typus) is a filter-feeding organism that can be considered a sentinel species, and Bahía de los Ángeles (BLA) in the Gulf of California is an important sighting site for these elasmobranchs. This filter-feeding organism can be considered a pollutant sampler from the marine environment. Persistent organic pollutants are toxic compounds with high mobility and environmental persistence, bioaccumulation and trophic transfer. Among these are polycyclic aromatic hydrocarbons (PAHs) and organochlorine pesticides (OCPs). The present work aimed to determine concentrations of PAHs and OCPs in whale shark skin biopsies, collected in 2021 at BLA. Mean detected levels of PAHs and OCPs were 279.4 ng/g dw (dry weight) and 1478.1 ng/g dw, respectively. Analysis of similarities between the ordered sizes (4.2-7.6 m) and the concentrations of PAHs and OCPs indicated no significant differences. Individual PAHs detected indicate pyrogenic and petrogenic sources; the presence of pesticides at levels higher than those of hydrocarbons may be related to agricultural activity in the areas surrounding the Baja California peninsula. This study is the first report of PAH levels in R. typus for the Gulf of California and Mexico.

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Total mercury ([THg]) and selenium ([TSe]) concentrations were determined in California sea lion (Zalophus californianus) lanugo from the Gulf of California in 2021 and 2022. Relationships with sex, morphometrics, and year were evaluated. Following toxicological thresholds of concern for piscivorous mammals, most pups had a [THg] < 10 ppm, one pup (2021) had a [THg] > 20 ppm, no pups had a [THg] > 30 ppm. Females had significantly higher [TSe] than males; sex did not influence [THg]. [THg] and [TSe] in 2022 were significantly higher in the general population and male cohorts compared to 2021. Significant negative correlations were observed between [THg], [TSe], and morphometrics (2021). These results indicate that, compared to other pinniped species, regional California sea lions may have a decreased likelihood of experiencing Hg-related adverse health effects. Year-related changes in element concentrations suggest continued monitoring of this population to assess pinniped, environmental, and potentially, human health.

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The most important fisheries are recording catches below their historical averages despite increased effort. This level of overfishing is worrying and requires the establishment of feasible and precise measures to prevent a continuing decrease in biomass. Determining the factors that lead to changes in the abundance and distribution of overfished resources would allow us to identify the strengths and weaknesses of management schemes; this approach would also make it possible to estimate more accurate parameters for their evaluation. We hypothesize that environmental, temporal, spatial, and operational components contribute to the variation in the relative abundance. Thus, we analyzed the red grouper fishery, the most important demersal fishery in the southeastern Gulf of Mexico (SGM); it is locally known as escama. We employed the catch per unit effort (CPUE) as an index of relative abundance recorded by the semi-industrial fleet (kilogram per effective fishing day) and the small-scale fleet (kilogram per effective fishing hour) during the overexploitation phase (from 1996 to 2019). We fitted several variables of the components using generalized additive models (GAM) and used multi-model inference to determine the best GAM for each fleet. For both fleets, the operational and temporal components (fishing gear and year) have had a greater impact on the distribution and abundance of red grouper in the SGM than the spatial and environmental components (the place of origin and sea surface temperature). These findings encourage the exploration of métier schemes for more efficient fishery management. In addition, we have identified several strategies that would support the recovery of the resource, such as restricting fishing in the quadrants located to the northeast or regulating scuba diving. We recommend that in the future, researchers use the indices we have generated in the present study to evaluate the red grouper fishery.

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Sponges are widely spread organisms in the tropical reefs of the American Northwest-Atlantic Ocean, they structure ecosystems and provide services such as shelter, protection from predators, and food sources to a wide diversity of both vertebrates and invertebrates species. The high diversity of sponge-associated fauna can generate complex networks of species interactions over small and large spatial-temporal gradients. One way to start uncovering the organization of the sponge host-guest complex networks is to understand how the accumulated geographic area, the sponge morphology and, sponge taxonomy contributes to the connectivity of sponge species within such networks. This study is a meta-analysis based on previous sponge host-guest literature obtained in 65 scientific publications, yielding a total of 745 host-guest interactions between sponges and their associated fauna across the Caribbean Sea and the Gulf of Mexico. We analyzed the sponge species contribution to network organization in the Northwest Tropical Atlantic coral reefs by using the combination of seven complementary species-level descriptors and related this importance with three main traits, sponge-accumulated geographic area, functional sponge morphology, and sponges' taxonomy bias. In general, we observed that sponges with a widespread distribution and a higher accumulated geographic area had a greater network structural contribution. Similarly, we also found that Cup-like and Massive functional morphologies trend to be shapes with a greater contribution to the interaction network organization compared to the Erect and Crust-like morphos. Lastly, we did not detect a taxonomy bias between interaction network organization and sponges' orders. These results highlight the importance of a specific combination of sponge traits to promote the diversity of association between reef sponges and their guest species.

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Despite general declines in coral reef ecosystems in the tropical western Atlantic, some reefs, including mesophotic reefs (30-150 m), are hypothesized to function as coral refugia due to their relative isolation from anthropogenic stressors. Understanding the connectivity dynamics among these putative refugia and more degraded reefs is critical to develop effective management strategies that promote coral metapopulation persistence and recovery. This study presents a geographically broad assessment of shallow (<30 m) and mesophotic (>30 m) connectivity dynamics of the depth-generalist coral species Montastraea cavernosa. Over 750 coral genets were collected across the Northwest and Southern Gulf of Mexico, Florida, Cuba, and Belize, and ~5000 SNP loci were generated to quantify high-resolution genetic structure and connectivity among these populations. Generally, shallow and mesophotic populations demonstrated higher connectivity to distant populations within the same depth zone than to adjacent populations across depth zones. However, exceptions to this pattern include the Northwest Gulf of Mexico and the Florida Keys which exhibited relatively high vertical genetic connectivity. Furthermore, estimates of recent gene flow emphasize that mesophotic M. cavernosa populations are not significant sources for their local shallow counterparts, except for the Northwest Gulf of Mexico populations. Location-based differences in vertical connectivity are likely a result of diverse oceanographic and environmental conditions that may drive variation in gene flow and depth-dependent selection. These results highlight the need to evaluate connectivity dynamics and refugia potential of mesophotic coral species on a population-by-population basis and to identify stepping-stone populations that warrant incorporation in future international management approaches.

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The effects of the toxic dinoflagellate Alexandrium catenella were investigated on growth, survival, and histopathology in larvae and spat of the Tehuelche scallop Aequipecten tehuelchus from Patagonia, Argentina. The study consisted of laboratory incubations of scallop larvae/spat with A. catenella, using environmentally realistic abundances of the dinoflagellate. Survival, growth, and histopathological effects were documented for scallop larvae/spat before, during, and after 7-day-long exposure to A. catenella. The scallops were grouped in flasks containing 0 (control), 20, 200, and 2000 cells mL-1 of A. catenella. The presence of A. catenella induced reduced larvae survival after 24 h, whereas a clear effect was observed after 3 days (survival of control larvae 95%, 72, and 79% for 20 and 200 cells mL-1, respectively, and 43% for 2000 cells mL-1). The growth rates of the control larvae and those exposed to 20 mL-1 cells were significantly different from zero. Histopathological effects (melanization, loss of connective tissue, necrosis, and inflammatory responses) were observed in spat exposed to A. catenella. These effects were more pronounced at the highest dinoflagellate concentration. Blooms of A. catenella frequently coincide with the reproductive season of A. tehuelchus, thus there is a need to further study the relationship between harmful algal blooms and the effect on scallops' natural populations in the region.

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Sediment load in rivers is recognized as both a carrier and a potential source of contaminants. Sediment deposition significantly changes river flow and morphology, thereby affecting stream hydrology and aquatic life. We projected sediment load from the Pearl River basin (PRB), Mississippi into the northern Gulf of Mexico under a future climate with afforestation using the SWAT (Soil and Water Assessment Tool)-based HAWQS (Hydrologic and Water Quality System) model. Three simulation scenarios were developed in this study: (1) the past scenario for estimating the 40-year sediment load from 1981 to 2020; (2) the future scenario for projecting the 40-year sediment load from 2025 to 2064, and (3) the future afforestation scenario that was the same as the future scenario, except for converting the rangeland located in the middle section of the Pearl River watershed of the PRB into the mixed forest land cover. Simulations showed a 16% decrease in sediment load for the future scenario in comparison to the past scenario due to the decrease in future surface runoff. Over both the past and future 40 years, the monthly maximum and minimum sediment loads occurred, respectively, in April and August; whereas the seasonal sediment load followed the order: spring > winter > summer > fall. Among the four seasons, winter and spring accounted for about 86% of sediment load for both scenarios. Under the future 40-year climate conditions, a 10% reduction in annual average sediment load with afforestation was observed in comparison to without afforestation. This study provides new insights into how a future climate with afforestation would affect sediment load into the northern Gulf of Mexico.

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Globally, six of the seven sea turtle species are threatened or endangered and as such, monitoring reproductive activity for these species is necessary for effective population recovery. Remote beaches provide a challenge to conducting these surveys, which often results in data gaps that can hamper management planning. Throughout the summer of 2022, aerial surveys were conducted over the Chandeleur Islands in the Gulf of Mexico. Turtle crawls were photographed for subsequent review by 10 expert observers. Whenever possible, ground surveys were conducted, and samples of unhatched eggs or dead hatchlings were collected. A summary of historic reports of sea turtle nesting activity at this site was also compiled. On 11 days between May 4, 2022, and July 30, 2022, photographs of 55 potential sea turtle crawls were taken. Observers identified 54 of those as being made by a sea turtle. There was high-to-moderate certainty that 16 of those crawls were nests, that 14 were made by loggerheads, and that two were made by Kemp's ridleys. Observers were least certain of species identification when surveys were conducted during rainy weather. Genetic analyses based on mitochondrial and nuclear DNA were conducted on samples from five nests and those analyses confirmed that three nests were laid by Kemp's ridleys and two were laid by loggerheads. Historic records from the Chandeleur Islands substantiate claims that the Chandeleurs have supported sea turtle nesting activity for decades; however, the consistency of this activity remains unknown. Our aerial surveys, particularly when coupled with imaging, were a useful tool for documenting nesting activity on these remote islands. Future monitoring programs at this site could benefit from a standardized aerial survey program with a seaplane so trends in nesting activity could be determined particularly as the beach undergoes restoration.