RESUMO
Staphylococcus aureus and a few species of coagulase negative are frequently associated with food poisoning. Raw milk and dairy products are among the foods usually associated with outbreaks due to staphylococcal intoxication. This study aimed to determine phenotypic and genotypic antimicrobial resistance profiles to beta-lactam drugs in Staphylococcus coagulase positive (CoPS) and negative (CoNS) isolates. A total of 58 CoPS and 45 CoNS isolates recovered from raw milk and artisanal cheese from Santa Catarina were analyzed. All isolates (n = 103) were subjected to antimicrobial susceptibility testing. High levels of resistance to penicillin (41% of CoPS and 31% of CoNS), amoxicillin (40% CoPS), ampicillin (36% CoPS), and sulfamethoxazole-trimethoprim (35% CoNS) were observed. Twenty six percent of the isolates (18 CoPS and 9 CoNS) exhibited multiresistance profile; which means, they were resistant to at least three different classes of the antimicrobial drugs. Detection of resistance genes (mecA, mecC, and blaZ) was performed using multiplex polymerase chain reaction. Twelve isolates (9 CoPS and 3 CoNS) were positive for mecA, whereas 10 strains (4 CoPS and 6 CoNS) were positive for blaZ. The detection of resistant and multidrug resistant isolates emphasizes the necessity to develop strategies to better comply with good manufacturing practices and health care guidelines.
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Wheat yellow (stripe) rust, caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most devastating diseases of wheat worldwide. Pst populations are composed of multiple genetic groups, each carrying one or more races characterized by different avirulence/virulence combinations. Since the severe epidemics in 2017, yellow rust has become the most economically important wheat foliar disease in Uruguay. A set of 124 Pst isolates collected from wheat fields in Uruguay between 2017 and 2021 were characterized phenotypically, and 27 of those isolates were subsequently investigated in-depth by additional molecular genotyping and race phenotyping analyses. Three genetic groups were identified, PstS7, PstS10, and PstS13, with the latter being the most prevalent. Two races previously reported in Europe, Warrior (PstS7) and Benchmark (PstS10), were detected in four and two isolates, respectively. A third race, known as Triticale2015 (PstS13), that was first detected in Europe in 2015 and in Argentina in 2017 was detected at several locations. Additional virulence to Yr3, Yr17, Yr25, Yr27, or Yr32 was detected in three new race variants within PstS13. The identification of these new races, which have not been reported outside South America, provides strong evidence of the local evolution of virulence in Pst during the recent epidemic years.
Assuntos
Doenças das Plantas , Puccinia , Triticum , Virulência/genética , Doenças das Plantas/microbiologia , Puccinia/patogenicidade , Puccinia/genética , Triticum/microbiologia , Uruguai , Genótipo , Evolução Biológica , Fenótipo , Basidiomycota/genética , Basidiomycota/patogenicidade , Basidiomycota/classificação , Basidiomycota/fisiologiaRESUMO
Turkish White Cheese is a brined (or pickled) cheese with a salty, acidic flavor and a soft or semi-hard texture. It is the most produced and consumed type of cheese in Turkey. The purpose of this study was to determine the non-starter lactic acid bacteria and yeast microbiota of traditionally produced Turkish White Cheese and analyze the chemical properties and the aroma profile of the cheese. The results of the study identified 27 distinct strains belonging to 14 the non-starter lactic acid bacteria species and 49 different strains belonging to 11 yeast species. Lactobacillus plantarum was found to be the dominant species among the lactic acid bacteria, while Candida zeylanoides was the dominant yeast species in the White Cheese samples. In addition, Kluyveromyces lactis and Debaryomyces hansenii were prominent yeast species in cheese samples. Turkish White Cheese samples had different aromatic properties. The study is highly significant as it anaylzed both non-starter lactic acid bacteria and yeast microbiota of traditionally produced Turkish White Cheese through molecular methods. It also determined and analyzed a number of chemical and aromatic properties of White Cheese.
Assuntos
Queijo , Lactobacillales , Lactobacillus plantarum , Microbiota , Turquia , Lactobacillales/genéticaRESUMO
Introduction: Staphylococcus aureus is an important pathogen that can form biofilms on food contact surfaces (FCS) in the dairy industry, posing a serious food safety, and quality concern. Biofilm is a complex system, influenced by nutritional-related factors that regulate the synthesis of the components of the biofilm matrix. This study determines the prevalence of biofilm-associated genes and evaluates the development under different growth conditions and compositions of biofilms produced by S. aureus. Methods: Biofilms were developed in TSB, TSBG, TSBNaCl, and TSBGNaCl on stainless-steel (SS), with enumeration at 24 and 192 h visualized by epifluorescence and scanning electron microscopy (SEM). The composition of biofilms was determined using enzymatic and chemical treatments and confocal laser scanning microscopy (CLSM). Results and discussion: A total of 84 S. aureus (SA1-SA84) strains were collected from 293 dairy industry FCS (FCS-stainless steel [n = 183] and FCS-polypropylene [n = 110]) for this study. The isolates harbored the genes sigB (66%), sar (53%), agrD (52%), clfB/clfA (38%), fnbA/fnbB (20%), and bap (9.5%). 99. In particular, the biofilm formed by bap-positive S. aureus onto SS showed a high cell density in all culture media at 192 h in comparison with the biofilms formed at 24 h (p < 0.05). Epifluorescence microscopy and SEM revealed the metabolically active cells and the different stages of biofilm formation. CLSM analysis detected extracellular polymeric of S. aureus biofilms on SS, such as eDNA, proteins, and polysaccharides. Finally, the level of detachment on being treated with DNase I (44.7%) and NaIO 4(42.4%) was greater in the biofilms developed in TSB compared to culture medium supplemented with NaCl at 24 h; however, there was no significant difference when the culture medium was supplemented with glucose. In addition, after treatment with proteinase K, there was a lower level of biomass detachment (17.7%) of the biofilm developed in TSBNaCl (p < 0.05 at 24 h) compared to that in TSB, TSBG, and TSBGNaCl (33.6, 36.9, and 37.8%, respectively). These results represent a deep insight into the composition of S. aureus biofilms present in the dairy industry, which promotes the development of more efficient composition-specific disinfection strategies.
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Late blight disease, caused by the plant pathogen Phytophthora infestans, is one of the major threats for tomato and potato crops. Monitoring the populations of P. infestans is important to determine if there are changes in the sensitivity to fungicides and host preference. In this study, microsatellite markers and mitochondrial haplotypes were used to assess the genotype of isolates of P. infestans collected from tomato and potato plants in Colombia. Furthermore, sensitivity to the three fungicides cymoxanil (penetrant fungicide), mefenoxam, and fluopicolide (systemic fungicides), and tomato-potato host preference, were evaluated. Mitochondrial haplotyping showed that isolates collected on tomato were from the genetic groups Ia and Ib, while isolates collected on potatoes belonged to group IIa. Microsatellite analyses showed that isolates from tomato form two groups, including the Ib mitochondrial haplotype (which is genetically close to the US-1 clonal lineage) and the Ia haplotype (related to the EC-3 lineage), whereas Colombian isolates from potato formed a separate group. Furthermore, differences in sensitivity to fungicides were observed. Eighty-one percent of the isolates tested were resistant to mefenoxam with an EC50 >10 µg ml-1. Forty-two percent of the isolates showed an intermediate resistance to cymoxanil. The EC50 values ranged between 1 and 10 µg ml-1. For fluopicolide, 90% of the isolates were sensitive, with EC50 <1 µg ml-1. Host preference assays showed that potato isolates infected both host species. Thus, isolates that infect potatoes may pose a risk for tomato crops nearby.
Assuntos
Fungicidas Industriais , Phytophthora infestans , Solanum lycopersicum , Solanum tuberosum , Colômbia , Produtos Agrícolas , Fungicidas Industriais/farmacologia , Genótipo , Phytophthora infestans/genética , Doenças das PlantasRESUMO
Protothecosis is a rare disease caused by environmental algae of the genus Prototheca. These are saprophytic, non-photosynthetic, aerobic, colorless algae that belong to the Chlorellaceae family. Seven different species have been described. Prototheca zopfii genotype 2 and P. wickerhamii are most commonly involved in pathogenic infections in humans and animals. The objective of this work is to describe, for the first time, a case of protothecosis caused by P. zopfii genotype 1 in a dog. The dog, a 4-year-old mix bred male, was presented to a veterinary clinic in Montevideo, Uruguay, with multiple skin nodules, one of which was excised by surgical biopsy. The sample was examined histologically and processed by PCR, DNA sequencing, and restriction fragments length polymorphisms for the detection and genotyping of P. zopfii. In addition, transmission electron microscopy and scanning electron microscopy were performed. Histology showed severe ulcerative granulomatous dermatitis and panniculitis with myriads of pleomorphic algae. Algal cells were 4-17 µm in size, with an amphophilic, 2-4-µm-thick wall frequently surrounded by a clear halo, contained flocculant material and a deeply basophilic nucleus, and internal septae with daughter cells (endospores) consistent with endosporulation. Ultrastructurally, algal cells/endospores at different stages of development were found within parasitophorous vacuoles in macrophages. Prototheca zopfii genotype 1 was identified by molecular testing, confirming the etiologic diagnosis of protothecosis.
Assuntos
Doenças do Cão/diagnóstico , Doenças do Cão/patologia , Infecções/veterinária , Prototheca/isolamento & purificação , Animais , Biópsia , DNA de Algas/química , DNA de Algas/genética , Doenças do Cão/microbiologia , Cães , Genótipo , Histocitoquímica , Infecções/diagnóstico , Infecções/microbiologia , Infecções/patologia , Masculino , Microscopia Eletrônica de Varredura , Microscopia Eletrônica de Transmissão , Reação em Cadeia da Polimerase , Polimorfismo de Fragmento de Restrição , Prototheca/classificação , Prototheca/genética , Análise de Sequência de DNA , Pele/patologia , UruguaiRESUMO
BACKGROUND: Serrano Catarinense cheese is a raw bovine milk cheese produced in the region of Santa Catarina, Brazil. Twelve representative strains of Leuconostoc isolated from 20 samples of this artisanal cheese were selected and submitted for evaluation of the acidifying, proteolytic, autolytic, aminopeptidase and lipolytic activities, NaCl and acid resistance, production of dextran and biogenic amines and antimicrobial activity. The aim was to genetically and technologically characterize the Leuconostoc strains in order to use them in mixed starter cultures for cheese manufacture. RESULTS: Leuconostoc mesenteroides subsp. mesenteroides was the species that accounted for the largest proportion of isolates of Leuconostoc genus. Two leuconostoc isolates stood out in the acidifying activity, with reduction in pH of 1.12 and 1.04 units. The isolates showed low proteolytic and autolytic activity. Most of the isolates were dextran producers, presented good resistance to the salt and pH conditions of the cheese and showed antimicrobial activity against cheese pathogen bacteria, and none of them produced biogenic amines. CONCLUSION: These results allowed the selection of five strains (UEL 04, UEL 12, UEL 18, UEL 21 and UEL 28) as good candidates for use as adjunct cultures for cheese manufacture. © 2018 Society of Chemical Industry.
Assuntos
Queijo/microbiologia , Leuconostoc/metabolismo , Animais , Aminas Biogênicas/análise , Aminas Biogênicas/metabolismo , Brasil , Bovinos , Queijo/análise , Fermentação , Leuconostoc/genética , Leuconostoc/isolamento & purificação , Leite/microbiologiaRESUMO
This work performed a phenotypic and genotypic characterization of 79 clinical isolates of Enterobacteriaceae and Pseudomonadaceae collected in hospitals of Southern Ecuadorin 2013. Our results showed a high incidence of ß-lactamases and ESBLs with blaTEM and blaCTX-M as the prevalent genes, respectively. By direct sequencing of PCR amplicons, the different ß-lactamases and variants of the genes were also distinguished. Our results revealed a predominance of TEM-1 ß-lactamase and the presence of different CTX-M variants with a prevalence of CTX-M-15. Two infrequent CTX-M variants in South America were also identified. To the best of our knowledge, this is one of the first studies describing the genetic characteristics of ß-lactamases in Ecuador.
Assuntos
Antibacterianos/farmacologia , Enterobacteriaceae/enzimologia , Pseudomonadaceae/enzimologia , beta-Lactamases/genética , DNA Bacteriano/genética , Testes de Sensibilidade a Antimicrobianos por Disco-Difusão , Equador , Enterobacteriaceae/classificação , Enterobacteriaceae/efeitos dos fármacos , Genótipo , Humanos , Fenótipo , Pseudomonadaceae/classificação , Pseudomonadaceae/efeitos dos fármacosRESUMO
Sourdough is a mixture of flour and water fermented by lactic acid bacteria and yeast, with a large use in bakery products. This study was developed with Brazilian grape (Niagara rosada) sourdough obtained from spontaneous fermentation. The aim of this work was to characterize genotypic and phenotypically lactic acid bacteria and yeasts isolated from sourdough. The phenotypic identification for bacteria and yeasts was performed by using the kit API50CHL and 20CAUX and the genotypic characterization was performed by sequencing method. A total of four isolated strains were analyzed in this study. Two of these strains were phenotypically and genotypic identified as Lactobacillus paracasei and one as Saccharomyces cerevisiae. Another sample phenotypically identified as Candida pelliculosa did not show the same identity by sequencing. It shows the need to use phenotypic and genotypic characterization associated for the correct microorganism identification.
Fermento natural é mistura de farinha e água fermentada por bactérias láticas e leveduras, amplamente utilizada em produtos de panificação. Neste estudo desenvolveu-se um fermento natural de uva brasileira (Niagara rosada), obtido a partir de fermentação espontânea. O objetivo deste trabalho foi caracterizar fenotipicamente e genotipicamente bactérias láticas e leveduras isoladas do fermento natural de uva. A identificação fenotípica para bactéria lática e leveduras foi realizada usando os kits API50CHL e 20CAUX e a caracterização genotípica foi realizada pelo método de sequenciamento. Neste estudo, isolaram-se quatro cepas. Duas cepas foram identificadas fenotipicamente e genotipicamente como Lactobacillus paracasei e outra cepa como Saccharomyces cerevisiae. A outra amostra de levedura, identificada fenotipicamente como Candida pelliculosa, não obteve a mesma identidade com a técnica de sequenciamento. Isso mostra a necessidade do uso da caracterização fenotípica e genotípica em associação para a correta identificação do micro-organismo.
Assuntos
Leveduras/classificação , Vitis/classificação , Fenótipo , Saccharomyces cerevisiae/metabolismo , Fermentação , GenótipoRESUMO
Isolates of bovine viral diarrhoea virus (BVDV) detected in serum samples of two persistently infected animals (PI) identified in a herd located in the southern state of Minas Gerais, Brazil, underwent genetic characterization trough partial nucleotide sequencing and analysis of the 5 Untranslated Region (5UTR) of the viral genome. The isolates were characterized as belonging to genotype BVDV-1, subgenotype BVDV-1b. The results of this study suggest BVDV-1b as an agent of importance in the occurrence of bovine viral diarrhoea (BVD) in the herds of the region. Moreover, the genotypic characterization of isolates of BVDV helps to better understand the epidemiology of the disease, as the genetic variability of BVDV interferes in the serological tests and has implications for the use of vaccines, whose majority is produced only with reference strains of BVDV. Therefore, the investigation on the genetic diversity of BVDV existing in Brazil is required for the improvement of the disease prevention and control measures.
Isolados do vírus da diarreia viral bovina (BVDV) detectados em amostras de soro sanguíneo de dois animais persistentemente infectados (PI), identificados num rebanho bovino localizado na região sul do Estado de Minas Gerais, Brasil, foram submetidos à caracterização genética através do sequenciamento parcial de nucleotídeos da região 5UTR do genoma viral. Os isolados foram caracterizados como pertencentes ao genótipo BVDV-1, subgenótipo BVDV-1b. Os resultados do presente estudo sugerem o BVDV-1b como um agente de importância na ocorrência da diarreia viral bovina (BVD) nos rebanhos da região. Ademais, a caracterização genotípica dos isolados do BVDV contribui para a melhor compreensão da epidemiologia da enfermidade, pois a variabilidade genética do BVDV interfere nos testes sorológicos e também possui implicações na utilização de vacinas, cuja maioria é produzida apenas com estirpes de referência do BVDV, requerendo, portanto, investigações sobre a diversidade genética do BVDV existente no Brasil para o aprimoramento das medidas de prevenção e controle da enfermidade no país.
Assuntos
Animais , Bovinos , Diarreia/veterinária , Epidemiologia , Virologia , Sorologia , Vacinas/farmacologiaRESUMO
Isolates of bovine viral diarrhoea virus (BVDV) detected in serum samples of two persistently infected animals (PI) identified in a herd located in the southern state of Minas Gerais, Brazil, underwent genetic characterization trough partial nucleotide sequencing and analysis of the 5 Untranslated Region (5UTR) of the viral genome. The isolates were characterized as belonging to genotype BVDV-1, subgenotype BVDV-1b. The results of this study suggest BVDV-1b as an agent of importance in the occurrence of bovine viral diarrhoea (BVD) in the herds of the region. Moreover, the genotypic characterization of isolates of BVDV helps to better understand the epidemiology of the disease, as the genetic variability of BVDV interferes in the serological tests and has implications for the use of vaccines, whose majority is produced only with reference strains of BVDV. Therefore, the investigation on the genetic diversity of BVDV existing in Brazil is required for the improvement of the disease prevention and control measures.(AU)
Isolados do vírus da diarreia viral bovina (BVDV) detectados em amostras de soro sanguíneo de dois animais persistentemente infectados (PI), identificados num rebanho bovino localizado na região sul do Estado de Minas Gerais, Brasil, foram submetidos à caracterização genética através do sequenciamento parcial de nucleotídeos da região 5UTR do genoma viral. Os isolados foram caracterizados como pertencentes ao genótipo BVDV-1, subgenótipo BVDV-1b. Os resultados do presente estudo sugerem o BVDV-1b como um agente de importância na ocorrência da diarreia viral bovina (BVD) nos rebanhos da região. Ademais, a caracterização genotípica dos isolados do BVDV contribui para a melhor compreensão da epidemiologia da enfermidade, pois a variabilidade genética do BVDV interfere nos testes sorológicos e também possui implicações na utilização de vacinas, cuja maioria é produzida apenas com estirpes de referência do BVDV, requerendo, portanto, investigações sobre a diversidade genética do BVDV existente no Brasil para o aprimoramento das medidas de prevenção e controle da enfermidade no país.(AU)
Assuntos
Animais , Bovinos , Diarreia/veterinária , Virologia , Epidemiologia , Sorologia , Vacinas/farmacologiaRESUMO
Isolates of bovine viral diarrhoea virus (BVDV) detected in serum samples of two persistently infected animals (PI) identified in a herd located in the southern state of Minas Gerais, Brazil, underwent genetic characterization trough partial nucleotide sequencing and analysis of the 5 Untranslated Region (5UTR) of the viral genome. The isolates were characterized as belonging to genotype BVDV-1, subgenotype BVDV-1b. The results of this study suggest BVDV-1b as an agent of importance in the occurrence of bovine viral diarrhoea (BVD) in the herds of the region. Moreover, the genotypic characterization of isolates of BVDV helps to better understand the epidemiology of the disease, as the genetic variability of BVDV interferes in the serological tests and has implications for the use of vaccines, whose majority is produced only with reference strains of BVDV. Therefore, the investigation on the genetic diversity of BVDV existing in Brazil is required for the improvement of the disease prevention and control measures.(AU)
Isolados do vírus da diarreia viral bovina (BVDV) detectados em amostras de soro sanguíneo de dois animais persistentemente infectados (PI), identificados num rebanho bovino localizado na região sul do Estado de Minas Gerais, Brasil, foram submetidos à caracterização genética através do sequenciamento parcial de nucleotídeos da região 5UTR do genoma viral. Os isolados foram caracterizados como pertencentes ao genótipo BVDV-1, subgenótipo BVDV-1b. Os resultados do presente estudo sugerem o BVDV-1b como um agente de importância na ocorrência da diarreia viral bovina (BVD) nos rebanhos da região. Ademais, a caracterização genotípica dos isolados do BVDV contribui para a melhor compreensão da epidemiologia da enfermidade, pois a variabilidade genética do BVDV interfere nos testes sorológicos e também possui implicações na utilização de vacinas, cuja maioria é produzida apenas com estirpes de referência do BVDV, requerendo, portanto, investigações sobre a diversidade genética do BVDV existente no Brasil para o aprimoramento das medidas de prevenção e controle da enfermidade no país.(AU)
Assuntos
Animais , Bovinos , Diarreia/patologia , Genoma Viral/genética , Genótipo , EpidemiologiaRESUMO
Considering the lack of information available in Brazil concerning listeriosis, the present study aimed to analyze phenotypic and genotypically Listeria monocytogenes clinical isolates from the Southwestern region of the State of São Paulo, Brazil. From January 1995 to May 2005, thirteen isolates of L. monocytogenes from twelve patients with listeriosis were sent to the Adolfo Lutz Institute (Campinas Regional Laboratory, São Paulo, Brazil). The antimicrobial susceptibility of the isolates was evaluated by the microdilution broth method for ampicillin, gentamicin, trimethoprim, sulfamethoxazole and vancomycin. They were also serotyped (Denka Seiken, Japan), and sub-typed by PFGE employing ApaI and AscI and the American CDC protocol. None of the isolates showed resistance to the antibiotics tested; however, seven of them presented increased values for sulfamethoxazole MICs. Ten isolates belonged to serotype 4b, two to serotype 1/2a and only one to serotype 1/2b. After digestion with ApaI and AscI, the strains were distributed in 3 different groups according to their profile. It was observed that the spatial or temporally unrelated strains exhibited similar PFGE profiles, indicating a possible clonal relationship among them.
No Brasil, dados sobre a ocorrência de surtos ou casos esporádicos de listeriose são raros, assim como estudos que tratem da caracterização de cepas de L. monocytogenes isoladas destes episódios. Desta forma, o presente estudo teve por objetivo avaliar feno e genotipicamente 13 cepas de Listeria monocytogenes isoladas de 12 casos clínicos de listeriose ocorridos em 6 municípios da região sudoeste do Estado de São Paulo, Brasil, no período de janeiro de 1995 a maio de 2005. As cepas foram submetidas ao teste de sensibilidade a cinco antimicrobianos (ampicilina, gentamicina, trimetoprim, sulfametoxazol e vancomicina) pelo método de microdiluição em caldo; à sorotipagem (Denka Seiken, Japão) e à determinação do perfil de macro-restrição por eletroforese em campo pulsado (PFGE, Pulsenet, CDC, USA, 2001). Nenhuma das cepas foi resistente aos antimicrobianos testados; entretanto, sete tiveram valores da CIM aumentados para o sulfametoxazol. Dez cepas pertenciam ao sorotipo 4b, duas ao sorotipo 1/2a e apenas uma ao sorotipo 1/2b. Com o emprego da técnica de PFGE e as enzimas Apa I e Asc I as cepas foram separadas em três grupos diferentes, de acordo com seus perfis moleculares. É interessante destacar que cepas não relacionadas (temporal ou espacialmente) apresentaram perfis moleculares semelhantes indicando uma possível relação clonal entre elas.