RESUMO

Titanium-based implants have long been studied and used for applications in bone tissue engineering, thanks to their outstanding mechanical properties and appropriate biocompatibility. However, many implants struggle with osseointegration and attachment and can be vulnerable to the development of infections. In this work, we have developed a composite coating via electrophoretic deposition, which is both bioactive and antibacterial. Mesoporous bioactive glass particles with gentamicin were electrophoretically deposited onto a titanium substrate. In order to validate the hypothesis that the quantity of particles in the coatings is sufficiently high and uniform in each deposition process, an easy-to-use image processing algorithm was designed to minimize human dependence and ensure reproducible results. The addition of loaded mesoporous particles did not affect the good adhesion of the coating to the substrate although roughness was clearly enhanced. After 7 days of immersion, the composite coatings were almost dissolved and released, but phosphate-related compounds started to nucleate at the surface. With a simple and low-cost technique like electrophoretic deposition, and optimized stir and suspension times, we were able to synthesize a hemocompatible coating that significantly improves the antibacterial activity when compared to the bare substrate for both Gram-positive and Gram-negative bacteria.

Assuntos

Antibacterianos , Quitosana , Eletroforese , Gentamicinas , Vidro , Teste de Materiais , Nanopartículas , Tamanho da Partícula , Propriedades de Superfície , Titânio , Gentamicinas/farmacologia , Gentamicinas/química , Titânio/química , Titânio/farmacologia , Antibacterianos/farmacologia , Antibacterianos/química , Vidro/química , Nanopartículas/química , Quitosana/química , Quitosana/farmacologia , Porosidade , Testes de Sensibilidade Microbiana , Humanos , Materiais Revestidos Biocompatíveis/química , Materiais Revestidos Biocompatíveis/farmacologia , Próteses e Implantes , Materiais Biocompatíveis/química , Materiais Biocompatíveis/farmacologia

RESUMO

Computational cell segmentation is a vital area of research, particularly in the analysis of images of cancer cells. The use of cell lines, such as the widely utilized HeLa cell line, is crucial for studying cancer. While deep learning algorithms have been commonly employed for cell segmentation, their resource and data requirements can be impractical for many laboratories. In contrast, image processing algorithms provide a promising alternative due to their effectiveness and minimal resource demands. This article presents the development of an algorithm utilizing digital image processing to segment the nucleus and shape of HeLa cells. The research aims to segment the cell shape in the image center and accurately identify the nucleus. The study uses and processes 300 images obtained from Serial Block-Face Scanning Electron Microscopy (SBF-SEM). For cell segmentation, the morphological operation of erosion was used to separate the cells, and through distance calculation, the cell located at the center of the image was selected. Subsequently, the eroded shape was employed to restore the original cell shape. The nucleus segmentation uses parameters such as distances and sizes, along with the implementation of verification stages to ensure accurate detection. The accuracy of the algorithm is demonstrated by comparing it with another algorithm meeting the same conditions, using four segmentation similarity metrics. The evaluation results rank the proposed algorithm as the superior choice, highlighting significant outcomes. The algorithm developed represents a crucial initial step towards more accurate disease analysis. In addition, it enables the measurement of shapes and the identification of morphological alterations, damages, and changes in organelles within the cell, which can be vital for diagnostic purposes.

RESUMO

The automatic generation of descriptions for medical images has sparked increasing interest in the healthcare field due to its potential to assist professionals in the interpretation and analysis of clinical exams. This study explores the development and evaluation of a generalist generative model for medical images. Gaps were identified in the literature, such as the lack of studies that explore the performance of specific models for medical description generation and the need for objective evaluation of the quality of generated descriptions. Additionally, there is a lack of model generalization to different image modalities and medical conditions. To address these issues, a methodological strategy was adopted, combining natural language processing and features extraction from medical images and feeding them into a generative model based on neural networks. The goal was to achieve model generalization across various image modalities and medical conditions. The results showed promising outcomes in the generation of descriptions, with an accuracy of 0.7628 and a BLEU-1 score of 0.5387. However, the quality of the generated descriptions may still be limited, exhibiting semantic errors or lacking relevant details. These limitations could be attributed to the availability and representativeness of the data, as well as the techniques used.

RESUMO

Alzheimer's disease (AD) is a progressive type of dementia characterized by loss of memory and other cognitive abilities, including speech. Since AD is a progressive disease, detection in the early stages is essential for the appropriate care of the patient throughout its development, going from asymptomatic to a stage known as mild cognitive impairment (MCI), and then progressing to dementia and severe dementia; is worth mentioning that everyone suffers from cognitive impairment to some degree as we age, but the relevant task here is to identify which people are most likely to develop AD. Along with cognitive tests, evaluation of the brain morphology is the primary tool for AD diagnosis, where atrophy and loss of volume of the frontotemporal lobe are common features in patients who suffer from the disease. Regarding medical imaging techniques, magnetic resonance imaging (MRI) scans are one of the methods used by specialists to assess brain morphology. Recently, with the rise of deep learning (DL) and its successful implementation in medical imaging applications, it is of growing interest in the research community to develop computer-aided diagnosis systems that can help physicians to detect this disease, especially in the early stages where macroscopic changes are not so easily identified. This article presents a DL-based approach to classifying MRI scans in the different stages of AD, using a curated set of images from Alzheimer's Disease Neuroimaging Initiative and Open Access Series of Imaging Studies databases. Our methodology involves image pre-processing using FreeSurfer, spatial data-augmentation operations, such as rotation, flip, and random zoom during training, and state-of-the-art 3D convolutional neural networks such as EfficientNet, DenseNet, and a custom siamese network, as well as the relatively new approach of vision transformer architecture. With this approach, the best detection percentage among all four architectures was around 89% for AD vs. Control, 80% for Late MCI vs. Control, 66% for MCI vs. Control, and 67% for Early MCI vs. Control.

RESUMO

Breast cancer (BC) diagnosis is made by a pathologist who analyzes a portion of the breast tissue under the microscope and performs a histological evaluation. This evaluation aims to determine the grade of cellular differentiation and the aggressiveness of the tumor by the Nottingham Grade Classification System (NGS). Nowadays, digital pathology is an innovative tool for pathologists in diagnosis and acquiring new learning. However, a recurring problem in health services is the excessive workload in all medical services. For this reason, it is required to develop computational tools that assist histological evaluation. This work proposes a methodology for the quantitative analysis of BC tissue that follows NGS. The proposed methodology is based on digital image processing techniques through which the BC tissue can be characterized automatically. Moreover, the proposed nuclei characterization was helpful for grade differentiation in carcinoma images of the BC tissue reaching an 0.84 accuracy. In addition, a metric was proposed to assess the likelihood of a structure in the tissue corresponding to a tubule by considering spatial and geometrical characteristics between lumina and its surrounding nuclei, reaching an accuracy of 0.83. Tests were performed from different databases and under various magnification and staining contrast conditions, showing that the methodology is reliable for histological breast tissue analysis.

Assuntos

Neoplasias da Mama , Neoplasias da Mama/diagnóstico , Feminino , Humanos , Processamento de Imagem Assistida por Computador/métodos , Microscopia , Coloração e Rotulagem

RESUMO

OBJECTIVES: To assess the dynamic range and enhancement ability of radiographs acquired with contemporary digital systems. METHODS: Five repeated periapical radiographs of human mandibles with an aluminium step-wedge were acquired using two sensor-based and three photostimulable phosphor plate-based systems and an X-ray unit at ten exposure times 0.020, 0.032, 0.063, 0.080, 0.100, 0.200, 0.320, 0.400, 0.500, and 0.630 s. All images had their brightness and contrast enhanced by two experienced oral and maxillofacial radiologists in consensus and were exported as both the original and enhanced file formats. Mean grey values were obtained from the aluminium steps and tabulated with their corresponding thicknesses for each exposure time, digital radiographic system, and file format. Images with saturated steps were excluded and the mean grey values from the remaining images were averaged to assess image brightness and the angular coefficient of the linear trendlines was generated from the relationship between mean grey values and their corresponding aluminium thicknesses to assess image contrast. Brightness and contrast values were compared using two-way ANOVA with post-hoc Tukey (α = 0.05). RESULTS: Photostimulable phosphor plate-based digital radiographic systems had a broader dynamic range. Longer exposure times produced original images with lower brightness and variable contrast (p < 0.05). Subjective enhancement significantly increased or reduced brightness and/or contrast in some systems (p < 0.05). CONCLUSIONS: Contemporary digital radiographic systems present different dynamic ranges and exposure-related brightness and contrast. Image enhancement may be a valuable tool at slightly suboptimal exposure times.

Assuntos

Alumínio , Radiografia Dentária Digital , Humanos , Mandíbula , Intensificação de Imagem Radiográfica/métodos , Radiografia Dentária Digital/métodos

RESUMO

ABSTRACT The aim of this paper is to show a technique to speed up the interpretation of bone scans in order to determine the presence of early bone metastasis. This is done using the gray levels histogram of the region of interest. The technique is intended to assist in the bone scans interpretation in order to provide a successful diagnosis. During the analysis, three types of histograms were observed on the regions of interest. If the histogram is narrow and shifted toward the origin, the bone scan is free of metastasis. If it is shifted to the right and slightly broadened, indicates the presence of a bone anomaly different from a metastasis. On the other hand, if the histogram is more broadened and shifted to the right, is suggests the presence of metastasis. This histogram is characterized by displaying small curls on the right side providing information about the metastatic disease stage, which could be low-amplitude peaks and have a short length, if the metastasis is in early stage, or high-amplitude peaks and a long length, if is advanced. Finally, the analyzed region is displayed in false color considering the minimum gray levels observed in the histogram.

RESUMO

The herbicide 2,4-dichlorophenoxyacetic acid (2,4-D) is widely used in agriculture to control various weeds. The objective of this study was to use the digital image processing method to identify alveolar lesions in the lungs of rats submitted to chronic 2,4-dichlorophenoxyacetic acid (2,4-D) inhalation exposure. We used forty adult male Wistar rats. The rats were divided into four groups: control group (CG), low concentration group (LCG), medium concentration group (MCG), and high concentration group (HCG). In a 6-month exposure period, we used two boxes connected to ultrasonic nebulizers for herbicide spraying. After this period, the rats were euthanized for the collection and study of lung tissue. For each image, counts of injuries and blisters were performed automatically using a methodology based on digital image processing techniques. For analysis of the results, an electronic database (Excel®) was created. We used the Pearson method for correlation analysis; values of p <0.05 were considered significant. In the evaluation of healthy alveoli, we recorded positive and significant correlations between analysis from a pathologist and computational analysis. In the evaluation of injured alveoli, we recorded a positive but non-significant correlation between analysis from a pathologist and computational analysis. These results show the effectiveness of digital image processing when evaluating alveolar integrity.

Assuntos

Herbicidas , Lesão Pulmonar , Ácido 2,4-Diclorofenoxiacético , Agricultura , Animais , Processamento de Imagem Assistida por Computador , Lesão Pulmonar/induzido quimicamente , Masculino , Ratos , Ratos Wistar

RESUMO

Pathogens and animal pests (P&A) are a major threat to global food security as they directly affect the quantity and quality of food. The Southern Amazon, Brazil's largest domestic region for soybean, maize and cotton production, is particularly vulnerable to the outbreak of P&A due to its (sub)tropical climate and intensive farming systems. However, little is known about the spatial distribution of P&A and the related yield losses. Machine learning approaches for the automated recognition of plant diseases can help to overcome this research gap. The main objectives of this study are to (1) evaluate the performance of Convolutional Neural Networks (ConvNets) in classifying P&A, (2) map the spatial distribution of P&A in the Southern Amazon, and (3) quantify perceived yield and economic losses for the main soybean and maize P&A. The objectives were addressed by making use of data collected with the smartphone application Plantix. The core of the app's functioning is the automated recognition of plant diseases via ConvNets. Data on expected yield losses were gathered through a short survey included in an "expert" version of the application, which was distributed among agronomists. Between 2016 and 2020, Plantix users collected approximately 78,000 georeferenced P&A images in the Southern Amazon. The study results indicate a high performance of the trained ConvNets in classifying 420 different crop-disease combinations. Spatial distribution maps and expert-based yield loss estimates indicate that maize rust, bacterial stalk rot and the fall armyworm are among the most severe maize P&A, whereas soybean is mainly affected by P&A like anthracnose, downy mildew, frogeye leaf spot, stink bugs and brown spot. Perceived soybean and maize yield losses amount to 12 and 16%, respectively, resulting in annual yield losses of approximately 3.75 million tonnes for each crop and economic losses of US$2 billion for both crops together. The high level of accuracy of the trained ConvNets, when paired with widespread use from following a citizen-science approach, results in a data source that will shed new light on yield loss estimates, e.g., for the analysis of yield gaps and the development of measures to minimise them.

RESUMO

Accurate identification of aquatic organisms and their numerical abundance calculation using echo detection techniques remains a great challenge for marine researchers. A software architecture for echo data processing is presented in this article. Within it, it is discussed how to obtain energetic, morphometric and bathymetric fish school descriptors to accurately identify different fish-species. To accomplish this task it was necessary to have a development platform that allowed reading echo data from a particular echosounder, to detect fish aggregations and then to calculate fish school descriptors that would be used for fish-species identification, in an automatic way. This article also describes thoroughly the digital processing algorithms for this automatic detection and classification, as well as the automatic process required for surface and bottom line detection, which is necessary to determine the exploration range. These algorithms are implemented within the ECOPAMPA software, which is the first Argentinean system for marine species identification. Finally, a comparative result over experimental data of ECOPAMPA against Echoview TM Software Pty Ltd (formerly Myriax Software Pty Ltd), is carefully examined.

RESUMO

The X-ray absorption (XRA) method using digital image processing techniques is a reliable technique to determine the exhaustion degree of granular activated carbons (GACs). Using an innovative digital image processing technique, the identification of individual adsorbed molecules or ions in a GAC was possible. Adsorption isotherm models (Langmuir and Freundlich) were used to simulate the adsorption equilibrium data of Methylene Blue (MB), nickel, cobalt and iodine. Freundlich equation was found to have the highest value of R2 compared with Langmuir. The identification of distinctive patterns applying XRA for different adsorbed ions and molecules onto GAC was explored. It is demonstrated that unique XRA configurations for each adsorbed ion or molecule are found, as well as a proportional relationship between its incident energy (needed to achieve maximum photon attenuation) and the (effective) atomic number, the adsorbate mass and the molar or atomic mass of adsorbed molecule or ion. XRA method in combination with image histogram modifications was used to obtain a digital signature of adsorbed ions/molecules, giving distinct GSI values for each one in the used energy range. Probabilistic models prove that XRA results are within relationships between effective atomic number and photonic interaction probability, reinforcing the potentialities of XRA for monitoring (multi-)ion and/or molecule combinations on GAC using advanced digital image processing techniques. It was proved that the proposed approach could assess different adsorbed ions/molecules onto GACs in water purification systems.

RESUMO

The aquatic macroinvertebrate community reflects the ecological status of a river. Typically, some extraction methods have been implemented, but the capture and preservation of organisms are necessary. The techniques of digital image processing applied to ecology have become innovative tools for the characterization of aquatic macroinvertebrates. This research implements a methodology for the processing and classification of four aquatic macroinvertebrates genera Thraulodes, Traverella (Ephemeroptera), Anacroneuria (Plecoptera), and Smicridea (Trichoptera) present in three rivers in Antioquia (Colombia), which includes two phases. The first of these was the collection and capture of organisms to obtain a database of the most abundant genera, at laboratory scale. The second was the use of simulations that allow the classification of data through a process of selection and extraction of characteristics using the bag of visual words technique. Of all the classifiers tested, Gaussian vector support machines obtained a percentage of success in the recognition up method of four organisms to the genus level of 97.1 %. The training and computational processing for classification enabled the standardization of an appropriate methodology that will serve as a starting point for aquatic biomonitoring and inventory in Colombia and internationally.

Assuntos

Ecossistema , Invertebrados , Animais , Colômbia , Monitoramento Ambiental , Rios

RESUMO

One of the most important operations during the manufacturing process of a pressure vessel is welding. The result of this operation has a great impact on the vessel integrity; thus, welding inspection procedures must detect defects that could lead to an accident. This paper introduces a computer vision system based on structured light for welding inspection of liquefied petroleum gas (LPG) pressure vessels by using combined digital image processing and deep learning techniques. The inspection procedure applied prior to the welding operation was based on a convolutional neural network (CNN), and it correctly detected the misalignment of the parts to be welded in 97.7% of the cases during the method testing. The post-welding inspection procedure was based on a laser triangulation method, and it estimated the weld bead height and width, with average relative errors of 2.7% and 3.4%, respectively, during the method testing. This post-welding inspection procedure allows us to detect geometrical nonconformities that compromise the weld bead integrity. By using this system, the quality index of the process was improved from 95.0% to 99.5% during practical validation in an industrial environment, demonstrating its robustness.

RESUMO

This work proposes dedicated hardware to real-time cancer detection using Field-Programmable Gate Arrays (FPGA). The presented hardware combines a Multilayer Perceptron (MLP) Artificial Neural Networks (ANN) with Digital Image Processing (DIP) techniques. The DIP techniques are used to extract the features from the analyzed skin, and the MLP classifies the lesion into melanoma or non-melanoma. The classification results are validated with an open-access database. Finally, analysis regarding execution time, hardware resources usage, and power consumption are performed. The results obtained through this analysis are then compared to an equivalent software implementation embedded in an ARM A9 microprocessor.

RESUMO

INTRODUCTION: The vectorcardiography (VCG) is a method of representing the heart's electrical activity in three dimensions that is not frequently used in clinical practice due to the higher complexity compared to electrocardiography (ECG). A way around this problem was the development of regression techniques to obtain the VCG from the 12­lead ECG and the evaluation of these techniques is done by comparing the parameters obtained by the gold standard method and by the VCG obtained by the alternative methods. In this paper it is proposed instead a comparison between the images of the VCG planes using the values returned by digital image processing metrics such as PSNR, SSIM and PW-SSIM. METHODS: The signals used were obtained from the Physikalisch-Technische Bundesanstalt Diagnostic ECG Database, which contains both the VCGs obtained by the gold standard method and the 12 lead ECG signals. They were divided into five groups that contained a control group and according to the region of the wall infarction. The ECG signals were then filtered using a Butterworth Finite Impulse Response bandpass filter, with cutoff frequencies of 3 Hz and 45 Hz and then the VCGs were by a computer application using the Kors inverse matrix method, the Kors quasi-orthogonal method and the Dower Inverse Matrix method. The reconstructed signals were then compared using the PSNR, SSIM and PW-SSIM methods. The returned values were presented in tables for each group containing the average value and standard deviance for each method in each VCG plane. RESULTS: Using image processing techniques, it was possible to perceive that the alternative methods to obtain the VCG have a high confiability that could be compared to the gold standard in signals from healthy subjects. However, signals from pathological subjects present variations that could be caused by a deficit of these alternative methods to represent the pathology in these cases. Considering the PW-SSIM, the Frontal plane by the reconstructions was considered the most similar to the gold standard, having PW-SSIM values higher than 0.93 and for the Horizontal plane two groups had PW-SSIM values lower than 0.90 and for the Sagittal plane all groups had values lower than this value. DISCUSSION: The values yielded by the PSNR and SSIM had low variance, worsening the perception of the effect of the reconstruction method used or the infarction effect over the reconstruction. The values lower than 0.90 could indicate that these planes have their generation most affected by the infarction. CONCLUSION: The three methods of obtaining the VCG Frank leads, the Kors Quasi-Orthogonal method, the Kors Linear Regression method and the Dower Inverse Matrix, presented differences in the metrics: PSNR, SSIM and PW-SSIM in normal subjects according to the planes frontal, horizontal and sagittal and in subjects with Myocardial Infarction according to its topography: anterior, inferolateral, inferior or multiarterials. Considering only the PW-SSIM, the QO method had the best performance in different signals, followed by the Dower method.

Assuntos

Eletrocardiografia , Infarto do Miocárdio , Humanos , Processamento de Imagem Assistida por Computador , Software , Vetorcardiografia

RESUMO

BACKGROUND: There are several methods for the quantification of biomass in SSF, such as glucosamine measurement, ergosterol content, protein concentration, change in dry weight or evolution of CO2 production. However, all have drawbacks when obtaining accurate data on the progress of the SSF due to the dispersion in cell growth on the solid substrate, and the difficulty encountered in separating the biomass. Studying the disadvantages associated with the process of biomass quantification in SSF, the monitoring of the growth of biomass by a technique known as digital image processing (DIP), consists of obtaining information on the production of different compounds during fermentation, using colorimetric methods based on the pixels that are obtained from photographs. OBJECTIVE: The purpose of this study was to know about the state of the technology and the advantages of DIP. METHODS: The methodology employed four phases; the first describes the search equations for the SSF and the DIP. A search for patents related to SSF and DIP carried out in the Free Patents Online and Patent inspiration databases. Then there is the selection of the most relevant articles in each of the technologies. As a third step, modifications for obtaining the best adjustments were also carried out. Finally, the analysis of the results was done and the inflection years were determined by means of six mathematical models widely studied. RESULTS: For these models, the inflection years were 2018 and 2019 for both the SSF and the DIP. Additionally, the main methods for the measurement of biomass in SSF were found, and are also indicated in the review, as DIP measurement processes have already been carried out using the same technology. CONCLUSION: In addition, the DIP has shown satisfactory results and could be an interesting alternative for biomass measurement in SSF, due to its ease and versatility.

Assuntos

Colorimetria/métodos , Fermentação/fisiologia , Fungos/metabolismo , Processamento de Imagem Assistida por Computador/métodos , Modelos Estatísticos , Biomassa , Biotecnologia/métodos , Dióxido de Carbono/análise , Dióxido de Carbono/metabolismo , Bases de Dados Bibliográficas , Ergosterol/análise , Ergosterol/metabolismo , Tecnologia de Alimentos/métodos , Glucosamina/análise , Glucosamina/metabolismo , Humanos , Processamento de Imagem Assistida por Computador/estatística & dados numéricos , Patentes como Assunto , Proteínas/análise , Proteínas/metabolismo

RESUMO

INTRODUCTION: Procedures for measuring and counting tracks are time-consuming and involve practical problems. The precision of automatic counting methods is not satisfactory yet; the major challenges are distinguishing tracks and material defects, identifying small tracks and defects of similar size, and detecting overlapping tracks. MATERIALS AND METHODS: Here, we address the overlapping tracks issue using the algorithm Watershed Using Successive Erosions as Markers (WUSEM), which combines the watershed transform, morphological erosions and labeling to separate regions in photomicrographs. We tested this method in two data sets of diallyl phthalate (DAP) photomicrographs and compared the results when counting manually and using the classic watershed and H-watershed transforms. RESULTS: The mean automatic/manual efficiency counting ratio when using WUSEM in the test data sets is 0.97 ± 0.11. CONCLUSION: WUSEM shows reliable results when used in photomicrographs presenting almost isotropic objects. Also, diameter and eccentricity criteria may be used to increase the reliability of this method.

RESUMO

Resumen En este trabajo se describe el uso de un software para detectar metástasis óseas en gammagramas cuyo funcionamiento está basado en un método cuantitativo. En la investigación se incluyeron cuarenta y tres gammagramas óseos de pacientes con cáncer de próstata, los cuales fueron previamente analizados visualmente por tres especialistas y su diagnóstico se tomó como referencia. Debido a que no todos los huesos de un paciente muestran los mismos tonos de gris, cada uno de los gammagramas se segmentó para su análisis en cuatro regiones: cráneo, hombros, tórax y pelvis. La segmentación se hizo con el fin de obtener intervalos de tonos de gris en cada una de las regiones empleando un proceso estadístico. Para ello se calcularon la media y la desviación estándar de cuatro muestras que contenían cada una cuarenta y tres regiones. Tomando en consideración los intervalos, siete colores fueron asignados a cada región. Mediante los colores fue posible diferenciar los casos sanos e infiltrados en cada región, lo que facilita el diagnóstico. Se muestran ejemplos de los resultados en cada una de las regiones.

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Abstract The use of software based on a quantitative method for detecting skeletal metastasis in bone scans is presented. Forty-three bone scans of patients with prostate cancer were previously analyzed visually by three specialists and their diagnosis were taken as a reference. Later, these scans were analyzed by segmenting them into four regions: skull, shoulders, chest, and pelvis. The segmentation was made to obtain intervals of gray levels for each of the regions using a statistical process. Tríese values were found by calculating the mean and standard deviation of four samples containing each forty-three regions. Using these intervals, seven colors were assigned to each region. By means of the colors it is possible to differentiate healthy and infiltrated cases in each region, which may facilitate the diagnosis. Examples of results in each region are shown.

RESUMO

In this paper, a semi-automatic multi-object tracking method to track a group of unmarked zebrafish is proposed. This method can handle partial occlusion cases, maintaining the correct identity of each individual. For every object, we extracted a set of geometric features to be used in the two main stages of the algorithm. The first stage selected the best candidate, based both on the blobs identified in the image and the estimate generated by a Kalman Filter instance. In the second stage, if the same candidate-blob is selected by two or more instances, a blob-partitioning algorithm takes place in order to split this blob and reestablish the instances' identities. If the algorithm cannot determine the identity of a blob, a manual intervention is required. This procedure was compared against a manual labeled ground truth on four video sequences with different numbers of fish and spatial resolution. The performance of the proposed method is then compared against two well-known zebrafish tracking methods found in the literature: one that treats occlusion scenarios and one that only track fish that are not in occlusion. Based on the data set used, the proposed method outperforms the first method in correctly separating fish in occlusion, increasing its efficiency by at least 8.15% of the cases. As for the second, the proposed method's overall performance outperformed the second in some of the tested videos, especially those with lower image quality, because the second method requires high-spatial resolution images, which is not a requirement for the proposed method. Yet, the proposed method was able to separate fish involved in occlusion and correctly assign its identity in up to 87.85% of the cases, without accounting for user intervention.

Assuntos

Algoritmos , Processamento de Imagem Assistida por Computador/métodos , Comportamento de Massa , Comportamento Espacial/fisiologia , Peixe-Zebra/fisiologia , Animais , Reprodutibilidade dos Testes , Gravação em Vídeo

RESUMO

Manual phenotyping for papaya Carica papaya (L) breeding purposes limits the evaluation of a great number of plants and hampers selection of superior genotypes. This study aimed to validate two methodologies for the phenotyping of morpho-agronomic plant traits using image analysis and fruit traits through image processing. In plants of the THB variety and UENF/Caliman-01 hybrid two images (A and B) were analyzed to estimate commercial and irregularly shaped fruits. Image A was also used in the estimation of plant height, stem diameter and the first fruit insertion height. In THB fruits, largest and smallest diameters, length, and volume were estimated by using a caliper and image processing (IP). Volume was obtained by water column displacement (WCD) and by the expression of ellipsoid approximation (EA). Correlations above 0.85 between manual and image measurements were obtained for all traits. The averages of the morpho-agronomic traits, estimated by using images, were similar when compared to the averages measured manually. In addition, the errors of the proposed methodologies were low compared to manual phenotyping. Bland-Altman's approach indicated agreement between the volume estimated by WCD and EA using caliper and IP. The strong association obtained between volume and fruit weight suggests the use of regression to estimate this trait. Thus, the expectation is that image-based phenotyping can be used to expand the experiments, thereby maintaining accuracy and providing greater genetic gains in the selection of superior genotypes.(AU)

Assuntos

Fenótipo , Processamento de Imagem Assistida por Computador/métodos , Carica/classificação , Produtos Agrícolas , Interação Gene-Ambiente