RESUMO
Neglecting genotype-by-environment interactions in multienvironment trials (MET) increases the risk of flawed cultivar recommendations for growers. Recent advancements in probability theory coupled with cutting-edge software offer a more streamlined decision-making process for selecting suitable candidates across diverse environments. Here, we present the user-friendly ProbBreed package in R, which allows breeders to calculate the probability of a given genotype outperforming competitors under a Bayesian framework. This article outlines the package's basic workflow and highlights its key features, ranging from MET model fitting to estimating the per se and pairwise probabilities of superior performance and stability for selection candidates. Remarkably, only the selection intensity is required to compute these probabilities. By democratizing this complex yet efficient methodology, ProbBreed aims to enhance decision-making and ultimately contribute to more accurate cultivar recommendations in breeding programs.
Assuntos
Modelos Genéticos , Software , Teorema de Bayes , GenótipoRESUMO
This work aimed to use the Bayesian approach to discriminate 43 genotypes of Coffea canephora cv. Conilon, which were cultivated in two producing regions to identify the most stable and productive genotypes. The experiment was a randomized block design with three replications and seven plants per plot, carried out in the south of Bahia and the north of Espírito Santo, environments with different climatic conditions, and evaluated during four harvests. The proposed Bayesian methodology was implemented in R language, using the MCMCglmm package. This approach made it possible to find great genetic divergence between the materials, and detect significant effects for both genotype, environment, and year, but the hyper-parametrized models (block effect) presented problems of singularity and convergence. It was also possible to detect a few differences between crops within the same environment. With a model with lower residual, it was possible to recommend the most productive genotypes for both environments: LB1, AD1, Peneirão, Z21, and P2.
RESUMO
The study of adaptability and stability underlies the cultivar recommendation process for all crops. There is a considerable number of statistical methods available for this purpose, but little is known about their actual adoption by the Brazilian scientific community. The objective of this study was to carry out a systematic review of the scientific literature on the adaptability and stability methods used in maize and soybean in Brazil from scientific articles published between 1970 and 2017 in Brazilian journals. Article searches were carried out in journals indexed through the SciELO database. The articles were classified according to the year of publication and the adaptability and stability methods used. We also evaluated the pattern of association between methods. We found 113 articles on adaptability and stability in maize and soybean, in which 21 methods were listed. The most commonly used method was the Eberhart and Russell methodology. The Cruz, Torres, and Vencovsky along with the AMMI methods were also widely used. The number of articles using most methods decreased in the current decade, except for the GGE Biplot, MHPRVG, and Centroid methods. In studies with more than one method, the methods were more likely to be used together with the Eberhart and Russell methodology. Adaptability and stability in maize and soybean have been widely studied over the last several decades in Brazil, although the number of publications on this subject has decreased over this time period.(AU)
Assuntos
Zea mays , Glycine max , Interação Gene-Ambiente , 24444 , BrasilRESUMO
The study of adaptability and stability underlies the cultivar recommendation process for all crops. There is a considerable number of statistical methods available for this purpose, but little is known about their actual adoption by the Brazilian scientific community. The objective of this study was to carry out a systematic review of the scientific literature on the adaptability and stability methods used in maize and soybean in Brazil from scientific articles published between 1970 and 2017 in Brazilian journals. Article searches were carried out in journals indexed through the SciELO database. The articles were classified according to the year of publication and the adaptability and stability methods used. We also evaluated the pattern of association between methods. We found 113 articles on adaptability and stability in maize and soybean, in which 21 methods were listed. The most commonly used method was the Eberhart and Russell methodology. The Cruz, Torres, and Vencovsky along with the AMMI methods were also widely used. The number of articles using most methods decreased in the current decade, except for the GGE Biplot, MHPRVG, and Centroid methods. In studies with more than one method, the methods were more likely to be used together with the Eberhart and Russell methodology. Adaptability and stability in maize and soybean have been widely studied over the last several decades in Brazil, although the number of publications on this subject has decreased over this time period.
Assuntos
24444 , Interação Gene-Ambiente , Glycine max , Zea mays , BrasilRESUMO
Multi-environment trials are commonly used to assess cultivar adaptation patterns under different environmental conditions and to help make effective cultivar recommendations for growers. An example of a multi-environment trial system used for cultivar recommendations is the Polish Post-registration Variety Testing System. A common approach in cultivar recommendations is to evaluate the adaptability of cultivars across, or for, specific trial locations. However, the locations of the trials and the fields where a farmer will grow a crop are hardly ever in the same place. Therefore, it would be better to group the trial locations into regions and give recommendations for the whole region. The aim of this study is to evaluate the grain yield adaptation patterns of 62 modern winter wheat cultivars in six agro-ecological regions of Poland for two crop management intensities over five growing seasons. The analysis of the grain yield data was performed separately for each intensity using single-stage approaches in linear mixed models. We ascertained that winter wheat yield variability was in the main determined by agro-ecological region and their interactions, and to a small extent by the cultivar effect. Cultivars Sailor and Linus were widely adapted to all agro-ecological regions studied for both crop management intensities. It is highly probable that these two cultivars will obtain high yield in all agro-ecological regions as well as with both crop management intensities studied. We observed high compatibility rankings between locations for both crop management intensities. High compatibility of the cultivar rankings in the trial locations also provides high precision when determining regions.(AU)
RESUMO
Multi-environment trials are commonly used to assess cultivar adaptation patterns under different environmental conditions and to help make effective cultivar recommendations for growers. An example of a multi-environment trial system used for cultivar recommendations is the Polish Post-registration Variety Testing System. A common approach in cultivar recommendations is to evaluate the adaptability of cultivars across, or for, specific trial locations. However, the locations of the trials and the fields where a farmer will grow a crop are hardly ever in the same place. Therefore, it would be better to group the trial locations into regions and give recommendations for the whole region. The aim of this study is to evaluate the grain yield adaptation patterns of 62 modern winter wheat cultivars in six agro-ecological regions of Poland for two crop management intensities over five growing seasons. The analysis of the grain yield data was performed separately for each intensity using single-stage approaches in linear mixed models. We ascertained that winter wheat yield variability was in the main determined by agro-ecological region and their interactions, and to a small extent by the cultivar effect. Cultivars Sailor and Linus were widely adapted to all agro-ecological regions studied for both crop management intensities. It is highly probable that these two cultivars will obtain high yield in all agro-ecological regions as well as with both crop management intensities studied. We observed high compatibility rankings between locations for both crop management intensities. High compatibility of the cultivar rankings in the trial locations also provides high precision when determining regions.
RESUMO
The genetic breeding of soybean aims to obtain productive genotypes, so it is necessary that the genetic components, environment and the interaction between them be understood. The G x E interaction is the differential behavior of the genotypes against environmental. The objective was to study the G x E interaction and analyze the adaptability and stability of soybean genotypes under natural rust infection without fungicide. The experiment was conducted in the Genetic Breeding Program of the Federal University of Uberlândia. Fourteen soybean genotypes were evaluated, with 10 lines developed by the UFU Program (UFUS1117: 01, 02, 03, 05, 06, 07, 08, 09, 10 and 11) and 4 cultivars: UFUS 7415, UFUS Riqueza, TMG 801 and BRSGO 7560 in four seasons: 2013/14, 2014/15, 2015/16 and 2016/17, in a randomized complete block design. The G x E interaction was complex and the H2 was 85.97% indicating superiority of genetic variation in relation to the environment. The average grain yield was 2284.13kg ha-1. The genotype UFUS 1117-01 was identified by Eberhart and Russel, Wricke, AMMI 2 and Centroid as being a highly productive stability genotype. The UFUS 1117-07 showed high stability by Eberhart and Russel, Wricke, Lin and Binns modified by Carneiro methods and wide adaptability by Eberhart and Russel and Centroid. The genotype UFUS 1117-09 was identified as being adaptable to unfavorable environments by the Lin and Binns modified by Carneiro and Centroid methods, and UFUS 1117-10 presented favorable environmental adaptability by the Centroid method and high stability by Eberhart and Russel.
O melhoramento genético da soja visa à obtenção de genótipos produtivos, então é necessário que os componentes genéticos, ambientais e a interação entre eles sejam compreendidos. A interação G x A é o comportamento diferencial dos genótipos frente às variações ambientais. O objetivo foi estudar a interação G x A e analisar a adaptabilidade e estabilidade produtiva de genótipos de soja sob infecção natural por ferrugem, sem fungicida. O experimento foi conduzido no Programa de Melhoramento Genético da UFU. Quatorze genótipos de soja foram avaliados, sendo 10 linhagens desenvolvidas pelo Programa de Melhoramento Genético de Soja da UFU (UFUS 1117-01, UFUS 1117-02, UFUS 1117-03, UFUS 1117-05, UFUS 1117-06, UFUS 1117-07, UFUS 1117-08, UFUS 1117-09, UFUS 1117-10 e UFUS 1117-11) e 4 cultivares ( UFUS 7415, UFUS Riqueza, TMG 801 e BRSGO 7560), em quatro safras: 2013/14, 2014/15, 2015/16 e 2016/17, em delineamento de blocos casualizados. A interação G x A foi significativa e complexa e o H2 foi de 85,97% indicando superioridade da variação genética em relação a ambiental. A média de produtividade de grãos foi 2284,13kg ha-1. O genótipo UFUS 1117-01 foi identificado pelas metodologias de Eberhart e Russel, Wricke, AMMI 2 e Centroide como sendo um genótipo de alta estabilidade produtiva. A linhagem UFUS 1117-07 apresentou alta estabilidade por Eberhart e Russel, Wricke, Lin e Bins modificado por Carneiro e ampla adaptabilidade por Eberhart e Russel e Centroide. O genótipo UFUS 1117-09 foi identificado como sendo adaptável a ambientes desfavoráveis por Lin e Bins modificado por Carneiros e Centroide, e UFUS 1117-10 apresentou adaptabilidade a ambiente favoráveis pelo método Centroide e alta estabilidade por Eberhart e Russel.