RESUMO

Tunicates are the sister group of vertebrates and thus occupy a key position for investigations into vertebrate innovations as well as into the consequences of the vertebrate-specific genome duplications. Nevertheless, tunicate genomes have not been studied extensively in the past, and comparative studies of tunicate genomes have remained scarce. The carpet sea squirt Didemnum vexillum, commonly known as "sea vomit", is a colonial tunicate considered an invasive species with substantial ecological and economical risk. We report the assembly of the D. vexillum genome using a hybrid approach that combines 28.5 Gb Illumina and 12.35 Gb of PacBio data. The new hybrid scaffolded assembly has a total size of 517.55 Mb that increases contig length about eightfold compared to previous, Illumina-only assembly. As a consequence of an unusually high genetic diversity of the colonies and the moderate length of the PacBio reads, presumably caused by the unusually acidic milieu of the tunic, the assembly is highly fragmented (L50 = 25,284, N50 = 6539). It is sufficient, however, for comprehensive annotations of both protein-coding genes and non-coding RNAs. Despite its shortcomings, the draft assembly of the "sea vomit" genome provides a valuable resource for comparative tunicate genomics and for the study of the specific properties of colonial ascidians.

RESUMO

This paper presents the ascidians from the Family Polyclinidae collected in the Gulf of Mexico during the Hourglass Cruises between August 1965 and November 1967. The analysis of the collected material revealed the presence of eight polyclinid ascidians from three different genera, with two new species and two new records for the Gulf of Mexico.

Assuntos

Urocordados , Animais , Golfo do México , México

RESUMO

Numerous colonies of Eudistoma amanitum sp. nov. have been collected in Caribbean waters. The colonies resemble the groups of mushrooms from the Amanita genus and there are different color morphs. The discussion includes comparison with other species with similar shape.

Assuntos

Urocordados , Animais , Região do Caribe

RESUMO

BACKGROUND: The colonial ascidian Didemnum vexillum, sea carpet squirt, is not only a key marine organism to study morphological ancestral patterns of chordates evolution but it is also of great ecological importance due to its status as a major invasive species. Non-coding RNAs, in particular microRNAs (miRNAs), are important regulatory genes that impact development and environmental adaptation. Beyond miRNAs, not much in known about tunicate ncRNAs. RESULTS: We provide here a comprehensive homology-based annotation of non-coding RNAs in the recently sequenced genome of D. vexillum. To this end we employed a combination of several computational approaches, including blast searches with a wide range of parameters, and secondary structured centered survey with infernal. The resulting candidate set was curated extensively to produce a high-quality ncRNA annotation of the first draft of the D. vexillum genome. It comprises 57 miRNA families, 4 families of ribosomal RNAs, 22 isoacceptor classes of tRNAs (of which more than 72 % of loci are pseudogenes), 13 snRNAs, 12 snoRNAs, and 1 other RNA family. Additionally, 21 families of mitochondrial tRNAs and 2 of mitochondrial ribosomal RNAs and 1 long non-coding RNA. CONCLUSIONS: The comprehensive annotation of the D. vexillum non-coding RNAs provides a starting point towards a better understanding of the restructuring of the small RNA system in ascidians. Furthermore it provides a valuable research for efforts to establish detailed non-coding RNA annotations for other recently published and recently sequences in tunicate genomes.

Assuntos

Organismos Aquáticos/genética , Genoma/genética , Biologia Marinha , RNA não Traduzido/genética , Animais , MicroRNAs/classificação , MicroRNAs/genética , Anotação de Sequência Molecular , RNA Longo não Codificante , RNA Nuclear Pequeno/classificação , RNA Nuclear Pequeno/genética , RNA Nucleolar Pequeno/classificação , RNA Nucleolar Pequeno/genética , RNA não Traduzido/classificação , Urocordados/genética

RESUMO

Here we present tabular keys for families and genera of ascidian species found in shallow waters in the Atlantic Ocean. Characters used in the keys are illustrated or shown in photos of dissected animals and we also provide generalized drawings of all genera. A list of species in each genus and their geographical distribution in the Atlantic is also included, totaling 461 species.

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O trabalho apresenta chaves tabulares para famílias e gêneros de espécies de ascídias encontradas em águas rasas no Oceano Atlântico. Os caracteres usados nas chaves são ilustrados ou apresentados em fotos de animais dissecados e são apresentados também desenhos generalizados de todos os gêneros. Também foram incluídas listas de espécies em cada gênero e sua distribuição geográfica no Atlântico, totalizando 461 espécies.

RESUMO

Despite limited natural dispersal, some species of ascidians can be transported vast distances via oceanic petroleum platforms, ship hulls and ballast water and therefore may be good indicators of bioinvasion. Usually non indigenous species (NIS) are abundant in harbors. This is caused in part because of the higher propagule delivery rate in these areas. An alternative explanation of why invasion is enhanced in harbor and marinas is that environmental degradation commonly found in these habitats favors the establishment of NIS. Most surveys for introduced species were not comprehensive and targeted mainly ports and marinas. Angra dos Reis is an excellent system that provides an opportunity to compare the potential distribution of introduced and native species of Ascidiacea between port and natural environments. Here, we compared the colonization of experimental subtidal plates placed in harbors and marinas with the colonization of plates placed in nearby natural areas. With 27 taxa (15 identified to species), species richness was greater in port environments (25 versus 8). Six taxa were common to both environments while 19 taxa were exclusively found in ports. Among the identified species in ports, three were introduced, five were cryptogenic and only one was native. Only three species were found exclusively in the natural sites and all were cryptogenic. The presence of introduced species only in the port areas of Angra dos Reis reinforces the need for continued, periodic monitoring in the region for early detection of new, potentially invasive, species as well as for better understanding of abnormal population growth of the already known species. Management to reduce the transfer of exotics to natural habitats must be implemented.

RESUMO

Despite limited natural dispersal, some species of ascidians can be transported vast distances via oceanic petroleum platforms, ship hulls and ballast water and therefore may be good indicators of bioinvasion. Usually non indigenous species (NIS) are abundant in harbors. This is caused in part because of the higher propagule delivery rate in these areas. An alternative explanation of why invasion is enhanced in harbor and marinas is that environmental degradation commonly found in these habitats favors the establishment of NIS. Most surveys for introduced species were not comprehensive and targeted mainly ports and marinas. Angra dos Reis is an excellent system that provides an opportunity to compare the potential distribution of introduced and native species of Ascidiacea between port and natural environments. Here, we compared the colonization of experimental subtidal plates placed in harbors and marinas with the colonization of plates placed in nearby natural areas. With 27 taxa (15 identified to species), species richness was greater in port environments (25 versus 8). Six taxa were common to both environments while 19 taxa were exclusively found in ports. Among the identified species in ports, three were introduced, five were cryptogenic and only one was native. Only three species were found exclusively in the natural sites and all were cryptogenic. The presence of introduced species only in the port areas of Angra dos Reis reinforces the need for continued, periodic monitoring in the region for early detection of new, potentially invasive, species as well as for better understanding of abnormal population growth of the already known species. Management to reduce the transfer of exotics to natural habitats must be implemented.

RESUMO

Despite limited natural dispersal, some species of ascidians can be transported vast distances via oceanic petroleum platforms, ship hulls and ballast water and therefore may be good indicators of bioinvasion. Usually non indigenous species (NIS) are abundant in harbors. This is caused in part because of the higher propagule delivery rate in these areas. An alternative explanation of why invasion is enhanced in harbor and marinas is that environmental degradation commonly found in these habitats favors the establishment of NIS. Most surveys for introduced species were not comprehensive and targeted mainly ports and marinas. Angra dos Reis is an excellent system that provides an opportunity to compare the potential distribution of introduced and native species of Ascidiacea between port and natural environments. Here, we compared the colonization of experimental subtidal plates placed in harbors and marinas with the colonization of plates placed in nearby natural areas. With 27 taxa (15 identified to species), species richness was greater in port environments (25 versus 8). Six taxa were common to both environments while 19 taxa were exclusively found in ports. Among the identified species in ports, three were introduced, five were cryptogenic and only one was native. Only three species were found exclusively in the natural sites and all were cryptogenic. The presence of introduced species only in the port areas of Angra dos Reis reinforces the need for continued, periodic monitoring in the region for early detection of new, potentially invasive, species as well as for better understanding of abnormal population growth of the already known species. Management to reduce the transfer of exotics to natural habitats must be implemented.