RESUMO

The genus Agave presents a bimodal karyotype with x = 30 (5L, large, +25S, small chromosomes). Bimodality within this genus is generally attributed to allopolyploidy in the ancestral form of Agavoideae. However, alternative mechanisms, such as the preferential accumulation of repetitive elements at the macrochromosomes, could also be important. Aiming to understand the role of repetitive DNA within the bimodal karyotype of Agave, genomic DNA from the commercial hybrid 11648 (2n = 2x = 60, 6.31 Gbp) was sequenced at low coverage, and the repetitive fraction was characterized. In silico analysis showed that ~67.6% of the genome is mainly composed of different LTR retrotransposon lineages and one satellite DNA family (AgSAT171). The satellite DNA localized at the centromeric regions of all chromosomes; however, stronger signals were observed for 20 of the macro- and microchromosomes. All transposable elements showed a dispersed distribution, but not uniform across the length of the chromosomes. Different distribution patterns were observed for different TE lineages, with larger accumulation at the macrochromosomes. The data indicate the differential accumulation of LTR retrotransposon lineages at the macrochromosomes, probably contributing to the bimodality. Nevertheless, the differential accumulation of the satDNA in one group of macro- and microchromosomes possibly reflects the hybrid origin of this Agave accession.

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Moenkhausia is a highly specious genus among the Characidae, composed of 96 valid species. Only twelve species have a known karyotype. Thus, here are presented the first cytogenetic data of two allopatric populations of Moenkhausia bonita and one of M. forestii, both belonging to the upper Paraná River basin (PR) with discussion on the evolutionary and cytotaxonomic aspects of the genus. The two species presented 2n = 50 chromosomes but different karyotype formulas and occurrence of 1-2 B chromosomes. These elements are small metacentrics in M. bonita and small acrocentrics in M. forestii. In both species, B chromosomes were euchromatic. Ag-NOR sites were found in pair 3 (metacentric), coinciding with fluorescent in situ hybridization (FISH) by the 18S rDNA probe in both species. However, the species differed in terms of the number and position of 5S rDNA sites. Heterochromatic blocks, mapped in M. bonita showed the least amount of heterochromatin in the terminal and pericentromeric regions, while the M. forestii karyotype revealed a greater amount of interstitial heterochromatic blocks. The karyotype distinctions between the two species, including the morphology of B chromosomes, may contribute as a reference in the taxonomic studies in this group.(AU)

Moenkhausia é um gênero altamente especioso dentre os Characidae, composto por 96 espécies válidas, mas apenas doze espécies têm seus cariótipos conhecidos. Portanto, são apresentados aqui os primeiros dados citogenéticos de duas populações alopátricas de Moenkhausia bonita e uma de M. forestii, ambas pertencentes à bacia do alto rio Paraná (PR), com uma ampla discussão sobre os aspectos evolutivos e citotaxonômicos do gênero. As duas espécies apresentaram 2n = 50 cromossomos, mas diferentes fórmulas cariotípicas e ocorrência de 1-2 cromossomos B. Esses elementos são pequenos metacêntricos em M. bonita e acrocêntricos pequenos em M. forestii. Em ambas as espécies, os cromossomos B apresentaram-se eucromáticos. Sítios Ag-NOR foram encontrados no par 3 (metacêntrico), coincidindo com a hibridização fluorescente in situ (FISH) pela sonda 18S rDNA em ambas as espécies. No entanto, as espécies diferiram em termos de número e posição dos sítios de 5S rDNA. Blocos heterocromáticos mapeados em M. bonita revelaram pequena quantidade de heterocromatina nas regiões terminal e pericentromérica, enquanto o cariótipo de M. forestii revelou uma maior quantidade de blocos heterocromáticos intersticiais. As distinções cariotípicas entre as duas espécies, incluindo a morfologia dos cromossomos B, podem contribuir como uma referência em estudos taxonômicos neste grupo.(AU)

Assuntos

RESUMO

Moenkhausia is a highly specious genus among the Characidae, composed of 96 valid species. Only twelve species have a known karyotype. Thus, here are presented the first cytogenetic data of two allopatric populations of Moenkhausia bonita and one of M. forestii, both belonging to the upper Paraná River basin (PR) with discussion on the evolutionary and cytotaxonomic aspects of the genus. The two species presented 2n = 50 chromosomes but different karyotype formulas and occurrence of 1-2 B chromosomes. These elements are small metacentrics in M. bonita and small acrocentrics in M. forestii. In both species, B chromosomes were euchromatic. Ag-NOR sites were found in pair 3 (metacentric), coinciding with fluorescent in situ hybridization (FISH) by the 18S rDNA probe in both species. However, the species differed in terms of the number and position of 5S rDNA sites. Heterochromatic blocks, mapped in M. bonita showed the least amount of heterochromatin in the terminal and pericentromeric regions, while the M. forestii karyotype revealed a greater amount of interstitial heterochromatic blocks. The karyotype distinctions between the two species, including the morphology of B chromosomes, may contribute as a reference in the taxonomic studies in this group.(AU)

Moenkhausia é um gênero altamente especioso dentre os Characidae, composto por 96 espécies válidas, mas apenas doze espécies têm seus cariótipos conhecidos. Portanto, são apresentados aqui os primeiros dados citogenéticos de duas populações alopátricas de Moenkhausia bonita e uma de M. forestii, ambas pertencentes à bacia do alto rio Paraná (PR), com uma ampla discussão sobre os aspectos evolutivos e citotaxonômicos do gênero. As duas espécies apresentaram 2n = 50 cromossomos, mas diferentes fórmulas cariotípicas e ocorrência de 1-2 cromossomos B. Esses elementos são pequenos metacêntricos em M. bonita e acrocêntricos pequenos em M. forestii. Em ambas as espécies, os cromossomos B apresentaram-se eucromáticos. Sítios Ag-NOR foram encontrados no par 3 (metacêntrico), coincidindo com a hibridização fluorescente in situ (FISH) pela sonda 18S rDNA em ambas as espécies. No entanto, as espécies diferiram em termos de número e posição dos sítios de 5S rDNA. Blocos heterocromáticos mapeados em M. bonita revelaram pequena quantidade de heterocromatina nas regiões terminal e pericentromérica, enquanto o cariótipo de M. forestii revelou uma maior quantidade de blocos heterocromáticos intersticiais. As distinções cariotípicas entre as duas espécies, incluindo a morfologia dos cromossomos B, podem contribuir como uma referência em estudos taxonômicos neste grupo.(AU)

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Despite the variation observed in the diploid chromosome number of storks (Ciconiiformes, Ciconiidae), from 2n = 52 to 2n = 78, most reports have relied solely on analyses by conventional staining. As most species have similar macrochromosomes, some authors propose that karyotype evolution involves mainly fusions between microchromosomes, which are highly variable in species with different diploid numbers. In order to verify this hypothesis, in this study, the karyotypes of 2 species of storks from South America with different diploid numbers, the jabiru (Jabiru mycteria, 2n = 56) and the maguary stork (Ciconia maguary, 2n = 72), were analyzed by chromosome painting using whole chromosome probes from the macrochromosomes of Gallus gallus (GGA) and Leucopternis albicollis (LAL). The results revealed that J. mycteria and C. maguary share synteny within chromosome pairs 1-9 and Z. The syntenies to the macrochromosomes of G. gallus are conserved, except for GGA4, which is homologous to 2 different pairs, as in most species of birds. A fusion of GGA8 and GGA9 was observed in both species. Additionally, chromosomes corresponding to GGA4p and GGA6 are fused to other segments that did not hybridize to any of the macrochromosome probes used, suggesting that these segments correspond to microchromosomes. Hence, our data corroborate the proposed hypothesis that karyotype evolution is based on fusions involving microchromosomes. In view of the morphological constancy of the macrochromosome pairs in most Ciconiidae, we propose a putative ancestral karyotype for the family, including the GGA8/GGA9 fusion, and a diploid number of 2n = 78. The use of probes for microchromosome pairs should be the next step in identifying other synapomorphies that may help to clarify the phylogeny of this family.

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Mexico is a biodiverse country in several taxa as reptiles, that include several species of freshwater and marine turtles. Eventhough most of this group species are under protection, Tabasco State has nine native freshwater turtles, like Kinosternon leucostomum, Trachemys scripta and Staurotypus triporcatus that are very important in traditional dishes. This has resulted in a critical level of their populations, together with little biological knowledge for their conservation. Therefore, this study was dedicated to turtle cytogenetics. The study was conducted using the conventional methods for cytogenetics. The results showed the modal diploid and haploid number for K. leucostomum of 2n=56 (2n=56+3 microchromosomes “B”) and 1n=28 chromosomes in mitosis and meiosis, respectively. In T. scripta 2n=50 chromosomes (2n=50+2 microchromosomes “B”) and 1n=25 chromosomes were also characterized. Whereas in S. triporcatus we only report the 2=54 chromosomes (2n=54+2 microchromosomes “B”). The karyological formula for K. leucostomum was integrated by 12 metacentric-submetacentric chromosomes “msm”/”A”+22 subtelocentrictelocentric chromosomes “stt”/”B”+22 telocentric chromosomes “T”/”C” with fundamental number (FN) of 90 chromosome arms. While T. scripta karyotype was integrated by 32 “msm/”A”+10 “stt”/”B”+8”T/”C” chromosomes, with FN of 92 arms. S. triporcatus karyotype formula was built up by 20 chromosomes “msm”/”A”+34 chromosomes “T”/”C” with FN of 74. The variation in chromosome classification, the fundamental number and the presence of supernumerary microchromosomes “B” in the studied species, were evidence of a particular chromosome cytotypes in Tabasco. We considered that the presence of microchromosomes “B” probably has different origins, and they may be very important as a pattern for the formation or separation of new species. This study also showed the absence of heterologous chromosomes between the females and males karyotypes from the studied species. Rev. Biol. Trop. 62 (2): 671-688. Epub 2014 June 01.

México es un país biodiverso en varios grupos taxonómicos incluyendo a los reptiles, por ello en el país existen varias especies de tortugas dulceacuícolas y marinas. Las especies que integran dicho grupo se encuentran dentro del listado de especies sujetas a protección. El estado de Tabasco cuenta con nueve especies de tortugas de agua dulce, de las cuales Kinosternon leucostomum, Trachemys scripta y Staurotypus triporcatus son de las más importantes dentro de la tradición culinaria, hecho que las ha llevado a niveles críticos en sus poblaciones; aunado al poco conocimiento biológico que sobre dichas especies existe para conservarlas. Por lo anterior, el presente estudio de citogenética es el primero en tortugas de agua dulce en la región. El estudio se realizó, empleando el método convencional de citogenética. Los resultados muestran, el número modal diploide y haploide de K. leucostomum de 2n=56 (2n=56+3 microcromosomas “B”) y 1n=28 cromosomas 686 en mitosis y meiosis, respectivamente. En T. scripta de 2n=50 cromosomas (2n=50+2 microcromosomas “B”) y 1n=25 cromosomas. Mientras que en S. triporcatus solo se reporta el 2n=54 cromosomas (2n=54+2 microcromosomas “B”). La fórmula cromosómica en K. leucostomum, fue de 12 cromosomas metacéntricos submetacéntricos “msm”/“A”+22 cromosomas subtelocéntricos-telocéntricos “stt”/“B”+22 cromosomas telocéntricos “T”/“C”, con número fundamental (NF) de 90 brazos cromosómicos. En T. scripta fue de 32 cromosomas “msm”/“A”+10 cromosomas “stt”/“B”+8 cromosomas “T”/“C”, con NF de 92 y en S. triporcatus 20 cromosomas “msm”/“A”+34 cromosomas “T”/“C” con NF de 74. La variación en la clasificación cromosómica, el número fundamental y la presencia de microcromosomas “B” supernumerarios en las tres especies, son evidencia de citotipos cromosómicos particulares de las tortugas de Tabasco. Se argumenta que la presencia de los microcromosomas “B” tiene diferentes orígenes y de su importancia como pauta para la formación o separación de nuevas especies. En el estudio se descarta la presencia de cromosomas heterólogos entre las hembras y los machos de las especies estudiadas.

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Studies of karyotypes have been revealing important information on the taxonomic relationships and evolutionary patterns in various groups of birds. However, the order Caprimulgiformes is one of the least known in terms of its cytotaxonomy. So far, there are no cytogenetic data in the literature on birds belonging to 3 of 5 families of this order -Nyctibiidae, Steatornithidae and Aegothelidae. For this reason, the aim of our study was to describe the karyotype of Nyctibius griseus (Gmelin, 1789) (Aves, Nyctibiidae, Caprimulgiformes) and contribute with new data that could help to clarify the evolutionary relationships in this group. Bone marrow was cultured directly to obtain material for the chromosome study. C-banding was used to visualize the constitutive heterochromatin and Ag-NOR-banding to reveal nucleolus organizer regions. The diploid number observed was 2n=86±. Using sequential Giemsa/C-banding staining, we determined that the W chromosome was entirely C-band positive with the two most prominent markers in the interstitial and distal regions of the long arm. The nucleolus organizer regions showed a typical location in a pair of microchromosomes that exhibited Ag-NOR.The results obtained for Nyctibius griseus suggest that, of all the species studied in the references cited, it has the most ancestral sex chromosome composition of the order Caprimulgiformes.

RESUMO

Cytogenetic studies were conducted on three discus species which inhabit the Amazon in Brazil: Symphysodon haraldi from Manacapuru, S. aequifasciatus from Tefé and S. discus from Barcelos. All individuals showed 2n=60 chromosomes, most of them biarmed. No sexual chromosomal heteromorphism was verified. However, different karyotypic formulae, owing to the presence of subtelocentric chromosomes, were verified for S. aequifasciatus and S. discus. One of the karyotypic formulae from S. aequifasciatus (cytotype 2) differs from the others, due to one of the homologues in the first chromosome pair being significantly larger than the other. A large variability was observed toward the nucleolar organizer regions (NOR) of S. haraldi and S. aequifasciatus. Although the number of silver-stained blocks varied from 2 to 5, confirming different NOR patterns, at least seven homologue pairs were involved with NORs. In S. discus only two marks were observed, however two chromosome pairs were involved, characterizing a multiple NOR system for the three species. The heterochromatic blocks were mainly located in the pericentromeric region of all chromosomes but, in some of them, they are also located in the proximal regions, both in the short and long arms. Moreover, in the cytotype 2 from S. aequifasciatus, an interstitial heterochromatic block was observed on the long arm of the largest homologue of the first pair. A direct comparison of karyotypes from more related genera (Heros, Uaru, Mesonauta and Pterophyllum), makes it clear that a succession of chromosomal rearrangements, mainly pericentric inversions, translocations and fissions/fusions occurred resulting in the present diploid number and intraspecific karyological variability found in Symphysodon.

Estudos citogenéticos foram conduzidos em três espécies de acará-disco que habitam a Amazônia no Brasil: Symphysodon haraldi coletada em Manacapuru, S. aequifasciatus coletada em Tefé e S. discus em Barcelos. Todos os indivíduos apresentaram 2n=60 cromossomos, a maioria deles com dois braços. Heteromorfismo de cromossomos sexuais não foi detectado. Porém, diferentes fórmulas cariotípicas, devido à presença de cromossomos subtelocêntricos, foram verificadas em S. aequifasciatus e em S. discus. Uma das fórmulas cariotípicas (citótipo 2) de S. aequifasciatus difere das outras, devido a um dos homólogos do primeiro par cromossômico ser significativamente maior que o outro. Uma grande variabilidade foi observada em relação à região organizadora do nucléolo (RON) de S. haraldi e de S. aequifasciatus. Embora, o número de marcações coradas por Nitrato de Prata variou de 2 a 5, confirmando diferentes padrões de RON, pelo menos sete pares de homólogos foram envolvidos com a RON. Em S. discus foram observadas apenas duas marcas, envolvendo, contudo, dois pares de cromossomos, caracterizando um sistema de RONs múltiplas, para as três espécies. Os blocos heterocromáticos estão localizados, principalmente, na região pericentromérica de todos os cromossomos, sendo que alguns deles também foram observados em regiões próximas aos centrômeros, tanto nos braços curtos quanto nos braços longos. Além disso, no citótipo 2 de S. aequifasciatus, um bloco heterocromático foi observado, intersticialmente no braço longo do maior homólogo do primeiro par. Uma comparação direta dos cariótipos dos gêneros mais relacionados (Heros, Uaru, Mesonauta e Pterophyllum), deixa claro que ocorreu uma sucessão de rearranjos cromossômicos, principalmente inversões pericêntricas, translocações e fissões/fusões, que resultou no presente número diplóide e na variabilidade cariotípica encontrada em Symphysodon.

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