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1.
PeerJ ; 12: e17641, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-39099655

RESUMO

Background: Due to the copious disposal of plastics, marine ecosystems receive a large part of this waste. Microplastics (MPs) are solid particles smaller than 5 millimeters in size. Among the plastic polymers, polystyrene (PS) is one of the most commonly used and discarded. Due to its density being greater than that of water, it accumulates in marine sediments, potentially affecting benthic communities. This study investigated the ingestion of MP and their effect on the meiofauna community of a sandy beach. Meiofauna are an important trophic link between the basal and higher trophic levels of sedimentary food webs and may therefore be substantially involved in trophic transfer of MP and their associated compounds. Methods: We incubated microcosms without addition of MP (controls) and treatments contaminated with PS MP (1-µm) in marine sediments at three nominal concentrations (103, 105, 107particles/mL), for nine days, and sampled for meiofauna with collections every three days. At each sampling time, meiofauna were collected, quantified and identified to higher-taxon level, and ingestion of MP was quantified under an epifluorescence microscope. Results: Except for Tardigrada, all meiofauna taxa (Nematoda, turbellarians, Copepoda, Nauplii, Acari and Gastrotricha) ingested MP. Absorption was strongly dose dependent, being highest at 107 particles/mL, very low at 105 particles/mL and non-demonstrable at 103 particles/mL. Nematodes accumulated MP mainly in the intestine; MP abundance in the intestine increased with increasing incubation time. The total meiofauna density and species richness were significantly lower at the lowest MP concentration, while at the highest concentration these parameters were very similar to the control. In contrast, Shannon-Wiener diversity and evenness were greater in treatments with low MP concentration. However, these results should be interpreted with caution because of the low meiofauna abundances at the lower two MP concentrations. Conclusion: At the highest MP concentration, abundance, taxonomic diversity and community structure of a beach meiofauna community were not significantly affected, suggesting that MP effects on meiofauna are at most subtle. However, lower MP concentrations did cause substantial declines in abundance and diversity, in line with previous studies at the population and community level. While we can only speculate on the underlying mechanism(s) of this counterintuitive response, results suggest that further research is needed to better understand MP effects on marine benthic communities.


Assuntos
Biodiversidade , Microplásticos , Poluentes Químicos da Água , Animais , Poluentes Químicos da Água/análise , Sedimentos Geológicos/química , Cadeia Alimentar , Organismos Aquáticos , Poliestirenos , Invertebrados/efeitos dos fármacos , Monitoramento Ambiental/métodos
2.
R Soc Open Sci ; 11(7): 240478, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-39156661

RESUMO

Species richness, community structure and taxonomic composition are important characteristics of biodiversity. Beetle communities show distinct diversity patterns according to habitat attributes. Tropical rainforest canopies, which are well known for their richness in Coleoptera, represent such a conspicuous life zone. Here, I describe a canopy-inhabiting beetle community associated with 23 tree species in a Neotropical lowland rainforest. Adult beetles were sampled manually and in aerial traps using a large tower crane for a cumulative year. The sample revealed 6738 adult beetles, which were assigned to 862 (morpho-)species in 45 families. The most species-rich beetle families were Curculionidae (n = 246), Chrysomelidae (n = 121) and Cerambycidae (n = 89). The most abundant families were Curculionidae (n = 2746) and Chrysomelidae (n = 1409). Dominant beetle families were found in most assemblages. The beetle community consisted of 400 singletons (46.4%). A similar proportion was evident for assemblages of single tree species. I found that 74.5% of all beetle species were restricted in their occurrence on host trees to the phenological season and time of the day. This daily and seasonal migration causes patterns similar to mass effects and therefore accounts for the high proportion of singletons.

3.
J Parasitol ; 110(4): 250-262, 2024 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-38972667

RESUMO

A total of 366 individuals of Lutjanus argentiventris (Peters, 1869) were collected over a 5-yr period (October 2018 to June 2022) from Acapulco Bay, Mexico. Parasite communities in Lutjanus argentiventris were quantified and analyzed to determine the main factors that generate changes in species richness and/or species composition over time. The digeneans and copepods were the best-represented parasite groups. The parasite communities were characterized by a high numerical dominance of ectoparasites, mainly isopod larvae. Species richness at the component community level (9-23 species) was similar to the reported richness in other Lutjanus spp. The parasite communities of Lutjanus argentiventris exhibited high variability in species composition, suggesting that each parasite species may respond differently to environmental changes. However, the species richness and diversity were fairly stable over time; therefore, a clear pattern of interannual variation was not observed. Variations in the community structure probably were due to factors such as host traits (e.g., feeding behavior and body size), and possible interannual differences in environmental factors amplified by the occurrence of the anomalous event of La Niña.


Assuntos
Biodiversidade , Copépodes , Doenças dos Peixes , Perciformes , Animais , México/epidemiologia , Perciformes/parasitologia , Doenças dos Peixes/parasitologia , Doenças dos Peixes/epidemiologia , Copépodes/classificação , Copépodes/fisiologia , Isópodes/classificação , Isópodes/fisiologia
4.
Int J Parasitol Parasites Wildl ; 24: 100941, 2024 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-38807751

RESUMO

The municipality of Sumidouro in the state of Rio de Janeiro, southeastern Brazil, is considered an area with low endemicity of Schistosoma mansoni. In this municipality, the wild water rat Nectomys squamipes is a wild reservoir of S. mansoni. A helminth community survey was carried out on N. squamipes populations in Sumidouro from 1997 to 1999. In the present study, we compared the helminth fauna and the helminth community structure of N. squamipes with a recent survey after a 22-year time interval, considering that the prevalence of S. mansoni infection in humans remained stable and that the area showed the same environmental characteristics. Seventy-three host specimens of N. squamipes collected between 1997 and 1999 and 21 specimens collected in 2021 were analyzed in this study. Seven helminth species were found in each collection period. The nematode Syphacia evaginata was recorded for the first time in N. squamipes in 2021. Syphacia venteli was the most abundant species in both periods and the most prevalent in 2021. During the period from 1997 to 1999, the most prevalent species was Hassalstrongylus epsilon. Significant differences in prevalence and abundance in relation to host sex were observed only for S. mansoni in 1997-1999. Significant differences in the abundance of the helminth species over time were observed only in Physaloptera bispiculata. Hassalstrongylus epsilon, S. venteli and S. mansoni were the dominant species in both periods. Litomosoides chagasfilhoi, Echinostoma paraensei paraensei and P. bispiculata became dominant, codominant and subordinate, respectively, over time. In conclusion, the helminth community of N. squamipes remained stable, with similar species richness, prevalence and abundance values and low beta-diversity over time. The occurrence of S. mansoni in the water rat has remained stable for decades, highlighting its importance for schistosomiasis control.

5.
Mycorrhiza ; 34(1-2): 45-55, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38483629

RESUMO

Worldwide urban landscapes are expanding because of the growing human population. Urban ecosystems serve as habitats to highly diverse communities. However, studies focusing on the diversity and structure of ectomycorrhizal communities are uncommon in this habitat. In Colombia, Quercus humboldtii Bonpl. is an ectomycorrhizal tree thriving in tropical montane forests hosting a high diversity of ectomycorrhizal fungi. Q. humboldtii is planted as an urban tree in Bogotá (Colombia). We studied how root-associated fungal communities of this tree change between natural and urban areas. Using Illumina sequencing, we amplified the ITS1 region and analyzed the resulting data using both OTUs and Amplicon Sequence Variants (ASVs) bioinformatics pipelines. The results obtained using both pipelines showed no substantial differences between OTUs and ASVs for the community patterns of root-associated fungi, and only differences in species richness were observed. We found no significant differences in the species richness between urban and rural sites based on Fisher's alpha or species-accumulation curves. However, we found significant differences in the community composition of fungi present in the roots of rural and urban trees with rural communities being dominated by Russula and Lactarius and urban communities by Scleroderma, Hydnangium, and Trechispora, suggesting a high impact of urban disturbances on ectomycorrhizal fungal communities. Our results highlight the importance of urban trees as reservoirs of fungal diversity and the potential impact of urban conditions on favoring fungal species adapted to more disturbed ecosystems.


Assuntos
Agaricales , Basidiomycota , Micobioma , Micorrizas , Quercus , Humanos , Micorrizas/genética , Ecossistema , Quercus/microbiologia , Biodiversidade , DNA Fúngico/genética , Árvores/microbiologia
6.
J Invertebr Pathol ; 204: 108079, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38447862

RESUMO

Studies on community composition and population structure of entomopathogenic fungi are imperative to link ecosystem functions to conservation biological control. We studied the diversity and abundance of Metarhizium spp. from soil of conventionally and organically farmed strawberry crops and from the adjacent field margins in two different climatic zones: Brazil (tropical) and Denmark (temperate), using the same isolating methods. In Brazilian strawberry soil, Metarhizium robertsii (n = 129 isolates) was the most abundant species, followed by M. humberi (n = 16); M. anisopliae (n = 6); one new taxonomically unassigned lineage Metarhizium sp. indet. 5 (n = 4); M. pingshaense (n = 1) and M. brunneum (n = 1). In Denmark, species composition was very different, with M. brunneum (n = 33) being isolated most commonly, followed by M. flavoviride (n = 6) and M. pemphigi (n = 5), described for the first time in Denmark. In total, 17 haplotypes were determined based on MzFG543igs sequences, four representing Danish isolates and 13 representing Brazilian isolates. No overall difference between the two climatic regimes was detected regarding the abundance of Metarhizium spp. in the soil in strawberry fields and the field margins. However, we found a higher Shannon's diversity index in organically managed soils, confirming a more diverse Metarhizium community than in soils of conventionally managed agroecosystems in both countries. These findings contribute to the knowledge of the indigenous diversity of Metarhizium in agricultural field margins with the potential to contribute to pest regulation in strawberry cropping systems.


Assuntos
Fragaria , Metarhizium , Microbiologia do Solo , Fragaria/microbiologia , Brasil , Dinamarca , Controle Biológico de Vetores
7.
J Fish Biol ; 104(1): 139-154, 2024 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-37696767

RESUMO

Salmonids were first introduced into the Chilean fresh waters in the 1880s, and c. 140 years later, they are ubiquitous across Chilean rivers, especially in the southern pristine fresh waters. This study examined the brown trout (Salmo trutta) and native taxa ecology in two adjacent but contrasting rivers of Chilean Patagonia. During spring 2016 and spring-fall 2017 we examined the variation in benthic macroinvertebrate and fish community composition and characterized fish size structure, stomach contents, and stable isotopes (δ13 C and δ15 N) to understand population structure, fish diet, and trophic interactions between S. trutta and native taxa. The native Galaxias maculatus (puye) dominated the fish community (74% of abundance). S. trutta was less abundant (16% of survey catch) but dominated the fish community (over 53%) in terms of biomass. S. trutta showed distinct diets (stomach content analysis) in the two rivers, and individuals from the larger river were notably more piscivorous, consuming native fish with a relatively small body size (<100-mm total length). Native fishes were isotopically distinct from S. trutta, which showed a wider isotopic niche in the smaller river, indicating that their trophic role was more variable than in the larger river (piscivorous). This study provides data from the unstudied pristine coastal rivers in Patagonia and reveals that interactions between native and introduced species can vary at very local spatial scales.


Assuntos
Osmeriformes , Salmonidae , Animais , Rios/química , Truta , Água Doce
8.
FEMS Microbiol Lett ; 3702023 01 17.
Artigo em Inglês | MEDLINE | ID: mdl-37401172

RESUMO

Despite the important roles that marine sponges play in ecosystem functioning and structuring, little is known about how the sponge holobiont responds to local anthropogenic impacts. Here we assess the influence of an impacted environment (Praia Preta) on the microbial community associated with the endemic sponge Aplysina caissara in comparison to a less-impacted area (Praia do Guaecá) from the coast of São Paulo state (Brazil, southwestern Atlantic coast). We hypothesized that the local anthropogenic impacts will change the microbiome of A. caissara and that the community assembly will be driven by a different process (i.e. deterministic versus stochastic) under distinct levels of impact. The microbiome at the amplicon sequence variants level was found to be statistically distinct between sponges from the different sites, and this was also seen for the microbial communities of the surrounding seawater and sediments. Microbial communities of A. caissara from both sites were found to be assembled by deterministic processes, even though the sites presented distinct anthropogenic impacts, showing a pivotal role of the sponge host in selecting its own microbiome. Overall, this study revealed that local anthropogenic impacts altered the microbiome of A. caissara; however, assembly processes are largely determined by the sponge host.


Assuntos
Efeitos Antropogênicos , Biodiversidade , Microbiota , Poríferos , Animais , Brasil , Microbiota/genética , Filogenia , Poríferos/microbiologia , RNA Ribossômico 16S/genética , Água do Mar/microbiologia , Sedimentos Geológicos/microbiologia , Interações entre Hospedeiro e Microrganismos , Archaea/classificação , Archaea/genética , Bactérias/classificação , Bactérias/genética
9.
Harmful Algae ; 123: 102403, 2023 03.
Artigo em Inglês | MEDLINE | ID: mdl-36894214

RESUMO

It is widely known that the environmental conditions caused by the construction of reservoirs favor the proliferation of toxic cyanobacteria and the formation of blooms due to the high residence time of the water, low turbidity, temperature regimes, among others. Microcystin-producing cyanobacteria such as those from the Microcystis aeruginosa complex (MAC) are the most frequently found organisms in reservoirs worldwide, being the role of the environment on microcystin production poorly understood. Here, we addressed the community dynamics and potential toxicity of MAC cyanobacteria in a subtropical reservoir (Salto Grande) located in the low Uruguay river. Samples were taken from five different sites (upstream, inside the reservoir and downstream) during contrasting seasons (summer and winter) to analyze: (i) the MAC community structure by amplicon sequencing of the phycocyanin gene spacer, (ii) the genotype diversity of microcystin-producing MAC by high resolution melting analysis of the mcyJ gene, and (iii) the abundance and mcy transcription activity of the microcystin-producing (toxic) fraction. We found that MAC diversity decreased from summer to winter but, despite the observed changes in MAC community structure, the abundance of toxic organisms and the transcription of mcy genes were always higher inside the reservoir, regardless of the season. Two different genotypes of toxic MAC were detected inside the reservoir, one associated with low water temperature (15 °C) and one thriving at high water temperature (31 °C). These findings indicate that the environmental conditions inside the reservoir reduce community diversity while promoting the proliferation of toxic genotypes that actively transcribe mcy genes, whose relative abundance will depend on the water temperature.


Assuntos
Cianobactérias , Microcystis , Microcystis/genética , Microcistinas/análise , Uruguai , Água
10.
Sci Total Environ ; 872: 162086, 2023 May 10.
Artigo em Inglês | MEDLINE | ID: mdl-36764536

RESUMO

Artificial light at night (ALAN) is a pervasive but still under-recognized driver of global change. In coastal settings, a large majority of the studies assessing ALAN impacts has focused on individual species, even though it is unclear whether results gathered from single species can be used to predict community-wide responses. Similarly, these studies often treat species as single life-stage entities, ignoring the variation associated with distinct life stages. This study addresses both limitations by focusing on the effects of ALAN on a sandy beach community consisting of species with distinct early- and late-life stages. Our hypothesis was that ALAN alters community structure and these changes are mediated by individual species and also by their ontogenetic stages. A field experiment was conducted in a sandy beach of north-central Chile using an artificial LED system. Samples were collected at different night hours (8-levels in total) across the intertidal (9-levels) over several days in November and January (austral spring and summer seasons). The abundance of adults of all species was significantly lower in ALAN treatments. Early stages of isopods showed the same pattern, but the opposite was observed for the early stages of the other two species. Clear differences were detected in the zonation of these species during natural darkness versus those exposed to ALAN, with some adult-juvenile differences in this response. These results support our hypothesis and document a series of changes affecting differentially both early and late life stages of these species, and ultimately, the structure of the entire community. Although the effects described correspond to short-term responses, more persistent effects are likely to occur if ALAN sources become established as permanent features in sandy beaches. The worldwide growth of ALAN suggests that the scope of its effect will continue to grow and represents a concern for sandy beach systems.


Assuntos
Ecossistema , Poluição Luminosa , Chile , Estações do Ano , Luz
11.
Microb Ecol ; 86(3): 1513-1533, 2023 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-36752910

RESUMO

Lake Villarrica, one of Chile's main freshwater water bodies, was recently declared a nutrient-saturated lake due to increased phosphorus (P) and nitrogen (N) levels. Although a decontamination plan based on environmental parameters is being established, it does not consider microbial parameters. Here, we conducted high-throughput DNA sequencing and quantitative polymerase chain reaction (qPCR) analyses to reveal the structure and functional properties of bacterial communities in surface sediments collected from sites with contrasting anthropogenic pressures in Lake Villarrica. Alpha diversity revealed an elevated bacterial richness and diversity in the more anthropogenized sediments. The phylum Proteobacteria, Bacteroidetes, Acidobacteria, and Actinobacteria dominated the community. The principal coordinate analysis (PCoA) and redundancy analysis (RDA) showed significant differences in bacterial communities of sampling sites. Predicted functional analysis showed that N cycling functions (e.g., nitrification and denitrification) were significant. The microbial co-occurrence networks analysis suggested Chitinophagaceae, Caldilineaceae, Planctomycetaceae, and Phycisphaerae families as keystone taxa. Bacterial functional genes related to P (phoC, phoD, and phoX) and N (nifH and nosZ) cycling were detected in all samples by qPCR. In addition, an RDA related to N and P cycling revealed that physicochemical properties and functional genes were positively correlated with several nitrite-oxidizing, ammonia-oxidizing, and N-fixing bacterial genera. Finally, denitrifying gene (nosZ) was the most significant factor influencing the topological characteristics of co-occurrence networks and bacterial interactions. Our results represent one of a few approaches to elucidate the structure and role of bacterial communities in Chilean lake sediments, which might be helpful in conservation and decontamination plans.


Assuntos
Bactérias , Lagos , Humanos , Lagos/microbiologia , Chile , Bactérias/genética , Proteobactérias/genética , Genes Bacterianos , Bacteroidetes/genética , Sedimentos Geológicos/microbiologia
12.
Environ Res ; 216(Pt 1): 114431, 2023 01 01.
Artigo em Inglês | MEDLINE | ID: mdl-36167113

RESUMO

Cr(VI) is a toxic, teratogenic, and carcinogenic heavy metal element in soil that poses major ecological and human health risks. In this study, microcosm tests combined with X-ray absorption near-edge spectra (XANES) and 16Sr DNA amplification techniques were used to explore the effect of Ginkgo biloba leaves on the removal efficiency of Cr(VI) in soil and its underlying mechanism. Ginkgo biloba leaves had a favorable remediation effect on soil varying in Cr(VI) contamination levels, and the optimal effect was observed when 5% Ginkgo biloba leaves were added. The occurrence state of Cr(VI) in soil before and after the addition of Ginkgo biloba leaves was analyzed by XANES, which revealed that Cr(VI) was fully converted to the more biologically innocuous Cr(III), and the hydroxyl-containing quercetin in Ginkgo biloba leaves was one of the primary components mediating this reduction reaction. The Cr(VI) content was significantly lower in non-sterilized soil than in sterilized soil, suggesting that soil microorganisms play a key role in the remediation process. The addition of Ginkgo biloba leaves decreased the α-diversity and altered the ß-diversity of the soil bacterial community. Actinobacteria was the dominant phylum in the soil remediated by Ginkgo biloba leaves; four genera of Cr(VI)-reducing bacteria were also enriched, including Agrococcus, Klebsiella, Streptomyces, and Microbacterium. Functional gene abundances predicted by PICRUST indicated that the expression of glutathione synthesis genes was substantially up-regulated, which might be the main metabolic pathway underlying the mitigation of Cr(VI) toxicity in soil by Cr(VI)-reducing bacteria. In sum, Ginkgo biloba leaves can effectively remove soil Cr(VI) and reduce Cr(VI) to Cr(III) via quercetin in soil, which also functions as a carbon source to drive the production of glutathione via Cr(VI)-reducing bacteria and mitigate Cr(VI) toxicity. The findings of this study elucidate the chemical and microbial mechanisms of Cr(VI) removal in soil by Ginkgo biloba leaves and provide insights that could be used to enhance the remediation of Cr(VI)-contaminated soil.


Assuntos
Ginkgo biloba , Poluentes do Solo , Humanos , Ginkgo biloba/química , Solo/química , Quercetina , Cromo/análise , Glutationa , Poluentes do Solo/análise
13.
Neotrop. ichthyol ; 21(2): e220098, 2023. mapas, tab, graf
Artigo em Inglês | VETINDEX | ID: biblio-1435621

RESUMO

Understanding patterns of freshwater fish assemblage structure is key to protect them from ongoing human-induced threats to aquatic biodiversity. Yet, studies on associations between fish assemblages and habitat are lacking from many areas of high diversity in Middle America. We assessed fish assemblage structure and environmental associations from a portion of the Lacantún River sub-basin (Usumacinta River, Chiapas, Mexico). Based on environmental data and 17,462 individuals (56 species, 46 genera, and 22 families) captured from 13 sites sampled between 2017­2019, we found that stream order, distance to the Usumacinta, forest cover, temperature, and dissolved oxygen are key to explaining assemblage composition. Four clusters were found via multivariate regression tree analysis, with stream order and dissolved oxygen as defining variables. Our findings suggest that fish communities remain spatially structured even at small scales, in association to environmental gradients among habitats.(AU)


Comprender los patrones de estructuración en los ensamblajes de peces dulceacuícolas es una clave para protegerlos de las amenazas humanas a la biodiversidad acuática. No obstante, los estudios sobre asociaciones entre ensamblajes de peces y su hábitat son aún escasos en muchas áreas de alta diversidad de América Media. Evaluamos las asociaciones entre la estructura de los ensamblajes de peces y el ambiente de una porción de la subcuenca del Río Lacantún (cuenca del Río Usumacinta, Chiapas, México). Con base en datos ambientales y un total de 17,462 individuos (56 especies, 46 géneros, y 22 familias) capturados de 13 sitios muestreados entre 2017­2019, encontramos que el orden del cauce, distancia al Usumacinta, cobertura vegetal, temperatura y oxígeno disuelto son clave para explicar la composición de los ensamblajes. Cuatro grupos se detectaron utilizando un árbol de regresión multivariada, definidos por el orden del cauce y el oxígeno disuelto como variables definitorias. Nuestros hallazgos sugieren que las comunidades de peces retienen su estructura espacial aún a pequeñas escalas, en asociación a gradientes ambientales entre hábitats.(AU)


Assuntos
Animais , Peixes/anatomia & histologia , Peixes/fisiologia , Padrões de Referência , Variação Genética , México
14.
Ecol Lett ; 25(11): 2384-2396, 2022 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-36192673

RESUMO

Ecological community structure ultimately depends on the production of community members by speciation. To understand how macroevolution shapes communities, we surveyed Anolis lizard assemblages across elevations on Jamaica and Hispaniola, neighbouring Caribbean islands similar in environment, but contrasting in the richness of their endemic evolutionary radiations. The impact of diversification on local communities depends on available spatial opportunities for speciation within or between ecologically distinct sub-regions. In the spatially expansive lowlands of both islands, communities converge in species richness and average morphology. But communities diverge in the highlands. On Jamaica, where limited highland area restricted diversification, communities remain depauperate and consist largely of elevational generalists. In contrast, a unique fauna of high-elevation specialists evolved in the vast Hispaniolan highlands, augmenting highland richness and driving islandwide turnover in community composition. Accounting for disparate evolutionary opportunities may illuminate when regional diversity will enhance local diversity and help predict when communities should converge in structure.


Assuntos
Lagartos , Animais , Lagartos/genética , Evolução Biológica , Biota , Índias Ocidentais , Filogenia
15.
Microbiol Spectr ; 10(6): e0178522, 2022 12 21.
Artigo em Inglês | MEDLINE | ID: mdl-36255324

RESUMO

Plant-associated microorganisms that affect plant development, their composition, and their functionality are determined by the host, soil conditions, and agricultural practices. How agricultural practices affect the rhizosphere microbiome has been well studied, but less is known about how they might affect plant endophytes. In this study, the metagenomic DNA from the rhizosphere and endophyte communities of root and stem of maize plants was extracted and sequenced with the "diversity arrays technology sequencing," while the bacterial community and functionality (organized by subsystems from general to specific functions) were investigated in crops cultivated with or without tillage and with or without N fertilizer application. Tillage had a small significant effect on the bacterial community in the rhizosphere, but N fertilizer had a highly significant effect on the roots, but not on the rhizosphere or stem. The relative abundance of many bacterial species was significantly different in the roots and stem of fertilized maize plants, but not in the unfertilized ones. The abundance of N cycle genes was affected by N fertilization application, most accentuated in the roots. How these changes in bacterial composition and N genes composition might affect plant development or crop yields has still to be unraveled. IMPORTANCE We investigated the bacterial community structure in the rhizosphere, root, and stem of maize plants cultivated under different agricultural techniques, i.e., with or without N fertilization, and with or without tillage. We found that the bacterial community was defined mostly by the plant compartment and less by agricultural techniques. In the roots, N fertilizer application affected the bacterial community structure, the microbiome functionality, and the abundance of genes involved in the N cycle, but the effect in the rhizosphere and stem was much smaller. Contrary, tillage did not affect the maize microbiome. This study enriches our knowledge about the plant-microbiome system and how N fertilization application affected it.


Assuntos
Microbiota , Solo , Solo/química , Endófitos , Nitrogênio , Zea mays/microbiologia , Fertilizantes , Rizosfera , Bactérias/genética , Produtos Agrícolas , Microbiologia do Solo
16.
Plants (Basel) ; 11(13)2022 Jun 21.
Artigo em Inglês | MEDLINE | ID: mdl-35807585

RESUMO

Plant roots recruit most prokaryotic members of their root microbiota from the locally available inoculum, but knowledge on the contribution of native microorganisms to the root microbiota of crops in native versus non-native areas remains scarce. We grew common bean (Phaseolus vulgaris) at a field site in its centre of domestication to characterise rhizosphere and endosphere bacterial communities at the vegetative, flowering, and pod filling stage. 16S r RNA gene amplicon sequencing of ten samples yielded 9,401,757 reads, of which 8,344,070 were assigned to 17,352 operational taxonomic units (OTUs). Rhizosphere communities were four times more diverse than in the endosphere and dominated by Actinobacteria, Bacteroidetes, Crenarchaeota, and Proteobacteria (endosphere: 99% Proteobacteria). We also detected high abundances of Gemmatimonadetes (6%), Chloroflexi (4%), and the archaeal phylum Thaumarchaeota (Candidatus Nitrososphaera: 11.5%): taxa less frequently reported from common bean rhizosphere. Among 154 OTUs with different abundances between vegetative and flowering stage, we detected increased read numbers of Chryseobacterium in the endosphere and a 40-fold increase in the abundances of OTUs classified as Rhizobium and Aeromonas (equivalent to 1.5% and over 6% of all reads in the rhizosphere). Our results indicate that bean recruits specific taxa into its microbiome when growing 'at home'.

17.
Environ Sci Pollut Res Int ; 29(41): 61747-61766, 2022 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-35675016

RESUMO

Although the southeast region of the Gulf of California has a high fish diversity, due to the high biological productivity, the coastal area of Nayarit has few studies in this regard. The main objective of this work is to describe the variability of the structure of the ichthyofauna in the coastal zone of Nayarit during an annual cycle. Biological samples were collected at 10 stations during February, May, July, and December 2014. The temperature, depth, salinity, and organic material and carbonates in sediments were also recorded. The analysis of diversity includes three facets: ecological, taxonomic, and functional. A total of 82 species belonging to 56 genera, 31 families, 11 orders, and two classes were identified. The most abundant species included Selene peruviana, Stellifer wintersteenorum, Cathorops sp., and Larimus argenteus. Of the total of identified species, 62% were considered as rare according to their abundance and frequency. Although the environmental variables analyzed were variable, all diversity indices did not reveal an evident spatio-seasonal pattern. Likewise, most values of average taxonomic distinctness presented the expected values. However, some values showed a low taxonomic diversity. The indices of functional diversity showed a stable functional richness and redundancy in the attributes of the species.


Assuntos
Peixes , Geraniaceae , Animais , Biodiversidade , Ecossistema , Meio Ambiente , México , Densidade Demográfica
18.
Microorganisms ; 10(5)2022 Apr 20.
Artigo em Inglês | MEDLINE | ID: mdl-35630293

RESUMO

Soil bacteria play a fundamental role in pedogenesis. However, knowledge about both the impact of climate and slope aspects on microbial communities and the consequences of these items in pedogenesis is lacking. Therefore, soil-bacterial communities from four sites and two different aspects along the climate gradient of the Chilean Coastal Cordillera were investigated. Using a combination of microbiological and physicochemical methods, soils that developed in arid, semi-arid, mediterranean, and humid climates were analyzed. Proteobacteria, Acidobacteria, Chloroflexi, Verrucomicrobia, and Planctomycetes were found to increase in abundance from arid to humid climates, while Actinobacteria and Gemmatimonadetes decreased along the transect. Bacterial-community structure varied with climate and aspect and was influenced by pH, bulk density, plant-available phosphorus, clay, and total organic-matter content. Higher bacterial specialization was found in arid and humid climates and on the south-facing slope and was likely promoted by stable microclimatic conditions. The presence of specialists was associated with ecosystem-functional traits, which shifted from pioneers that accumulated organic matter in arid climates to organic decomposers in humid climates. These findings provide new perspectives on how climate and slope aspects influence the composition and functional capabilities of bacteria, with most of these capabilities being involved in pedogenetic processes.

19.
Parasitol Res ; 121(7): 1937-1949, 2022 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-35589866

RESUMO

Fish parasite communities can be directly influenced by characteristics of host species. However, little is known about the host-parasite relationships in commercially important fish of the southeastern Atlantic. To address this knowledge gap, a comparative analysis of the parasite communities of three sympatric Clupeiformes was conducted. Cetengraulis edentulus (Engraulidae), Opisthonema oglinum (Clupeidae) and Sardinella brasiliensis (Clupeidae) were collected from an estuarine lagoon near Rio de Janeiro, Brazil. Prevalence, abundance and aggregation were estimated for infrapopulations; richness, diversity, evenness and dominance for infracommunities. The three component communities were compared using both quantitative and qualitative components. Canonical discriminant analysis was used to determine if a host population could be characterised by the component community of its parasites. Multivariate models revealed that host species, a proxy for diet and phylogenetic relationships, was the main factor influencing the composition of parasite infracommunities. Diet was found to be the main factor shaping the communities of endoparasites, in which digeneans were dominant and best indicator of host population. Ectoparasites (copepods, isopods and monogeneans) displayed strong host-specificity with some species restricted to a single host population. The similarity of the component communities of the two clupeid populations demonstrated the influence of host phylogeny. Parasite infracommunities exhibited low diversity and high dominance, with many taxa restricted to a single host species (specialists) and few occurring in more than one (generalists). Host phylogeny and by extension, diet, morphology and coevolution with parasites appear to be important factors in determining the host-parasite relationships of clupeiform fish in the southeastern Atlantic.


Assuntos
Doenças dos Peixes , Parasitos , Animais , Brasil/epidemiologia , Doenças dos Peixes/epidemiologia , Doenças dos Peixes/parasitologia , Peixes/parasitologia , Interações Hospedeiro-Parasita , Parasitos/genética , Filogenia
20.
Parasitol Res ; 121(2): 591-600, 2022 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-35066664

RESUMO

The whitemouth croaker, Micropogonias furnieri, a coastal demersal fish with wide distribution in the Southwest Atlantic Ocean, is a euryhaline species, inhabiting waters with a wide range in salinity. Here, the composition of parasite assemblages of M. furnieri caught along the coastal area off Mar del Plata, Argentina, was described and the infracommunity structure compared with fish from brackish waters to determine variations of its parasite communities due to fish migration between these environments. The relationships between the presence of parasites and the diet and ecological traits of this fish host were discussed. A total of 61 fish from Mar del Plata (MDP) were examined for parasites and compared with previously published data for whitemouth croakers from Mar Chiquita coastal lagoon (MCH), an estuarine system connected to the sea. Corynosoma australe, Dichelyne sciaenidicola, and Neopterinotrematoides avaginata were the most prevalent and abundant species in MDP. Comparisons of infracommunity descriptors showed that fish from MDP harbored a higher number of parasites, as well as richer and more diverse infracommunities than those of MCH. Significant differences occurred in the structure and composition of parasite assemblages of whitemouth croaker from MDP compared to those from MCH, in which Neomacrovalvitrema argentinensis, N. avaginata, Neobrachiella chevreuxii, D. sciaenidicola, and C. australe were the key discriminating species related to these differences. The present study provides comparative data, of great importance for the understanding of parasite-host-environment interactions, particularly in a host that alternates between brackish and marine waters during its life cycle.


Assuntos
Doenças dos Peixes , Parasitos , Perciformes , Animais , Oceano Atlântico , Doenças dos Peixes/epidemiologia , Peixes , Águas Salinas
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