RESUMO
BACKGROUND: Inflorescence architecture is denoted by the spatial arrangement of various lateral branches and florets formed on them, which is shaped by a complex of regulators. Unveiling of the regulatory mechanisms underlying inflorescence architecture is pivotal for improving crop yield potential. Quinoa (Chenopodium quinoa Willd), a pseudo cereal originated from Andean region of South America, has been widely recognized as a functional super food due to its excellent nutritional elements. Increasing worldwide consumption of this crop urgently calls for its yield improvement. However, dissection of the regulatory networks underlying quinoa inflorescence patterning is lacking. RESULTS: In this study, we performed RNA-seq analysis on quinoa inflorescence samples collected from six developmental stages, yielding a total of 138.8 GB data. We screened 21,610 differentially expressed genes (DEGs) among all the stages through comparative analysis. Weighted Gene Co-Expression Network Analysis (WGCNA) was performed to categorize the DEGs into ten different modules. Subsequently, we placed emphasis on investigating the modules associated with none branched and branched inflorescence samples. We manually refined the coexpression networks with stringent edge weight cutoffs, and generated core networks using transcription factors and key inflorescence architecture related genes as seed nodes. The core networks were visualized and analyzed by Cytoscape to obtain hub genes in each network. Our finding indicates that the specific occurrence of B3, TALE, WOX, LSH, LFY, GRAS, bHLH, EIL, DOF, G2-like and YABBY family members in early reproductive stage modules, and of TFL, ERF, bZIP, HD-ZIP, C2H2, LBD, NAC, C3H, Nin-like and FAR1 family members in late reproductive stage modules, as well as the several different MADS subfamily members identified in both stages may account for shaping quinoa inflorescence architecture. CONCLUSION: In this study we carried out comparative transcriptome analysis of six different stages quinoa inflorescences, and using WGCNA we obtained the most highly potential central hubs for shaping inflorescence. The data obtained from this study will enhance our understanding of the gene network regulating quinoa inflorescence architecture, as well will supply with valuable genetic resources for high-yield elite breeding in the future.
Assuntos
Chenopodium quinoa/genética , Regulação da Expressão Gênica de Plantas , Inflorescência/genética , Chenopodium quinoa/anatomia & histologia , Chenopodium quinoa/metabolismo , Grão Comestível/genética , Redes Reguladoras de Genes/fisiologia , Inflorescência/anatomia & histologia , Inflorescência/metabolismo , Proteínas de Domínio MADS/genética , Proteínas de Domínio MADS/metabolismo , RNA-Seq , América do Sul , Fatores de Transcrição/genética , Fatores de Transcrição/metabolismoRESUMO
Background: Jatropha curcas L., as an important strategic biofuel resource with considerable economic potential, has attracted worldwide attention. However, J. curcas has yet to be domesticated. Plant height, an important agronomic trait of J. curcas, has not been sufficiently improved, and the genetic regulation of this trait in J. curcas is not fully understood. Zinc finger proteins (ZFPs), a class of transcription factors, have previously been shown to play critical roles in regulating multiple aspects of plant growth and development and may accordingly be implicated in the genetic regulation of plant height in J. curcas. Results: In this study, we cloned JcZFP8, a C2H2 ZFP gene in J. curcas. We found that the JcZFP8 protein was localized in the nucleus and contained a conserved QALGGH motif in its C2H2 structure. Furthermore, ectopic expression of JcZFP8 under the control of the 35S promoter in transgenic tobacco resulted in dwarf plants with malformed leaves. However, when JcZFP8 was knocked out, the transgenic tobacco did not show the dwarf phenotype. After treatment with the gibberellic acid (GA) biosynthesis inhibitor paclobutrazol (PAC), the dwarf phenotype was more severe than plants that did not receive the PAC treatment, whereas application of exogenous gibberellin3 (GA3) reduced the dwarf phenotype in transgenic plants. Conclusions: The results of this study indicate that JcZFP8 may play a role in J. curcas plant phenotype through GA-related pathways. Our findings may help us to understand the genetic regulation of plant development in J. curcas and to accelerate breeding progress through engineering of the GA metabolic pathway in this plant. How to cite: Shi X,Wu Y, Dai T, et al. JcZFP8, a C2H2 zinc-finger protein gene from Jatropha curcas, influences plant development in transgenic tobacco.
Assuntos
Nicotiana/genética , Jatropha , Desenvolvimento Vegetal , Dedos de Zinco CYS2-HIS2/genética , Reguladores de Crescimento de Plantas/genética , Fatores de Transcrição , Triazóis , Plantas Geneticamente Modificadas/crescimento & desenvolvimento , Clonagem Molecular , Regulação da Expressão Gênica de Plantas , Reação em Cadeia da Polimerase em Tempo Real , GiberelinasRESUMO
The present study was carried out on a number of 16 skulls of adult male domestic donkeys. Craniometric measurements for 40 different parts of the skulls were made. All investigated features were expressed as Mean±SD. Cephalic indices and ratios were calculated by using the investigated features. The craniometric measurements and cephalic indices had been compared with those of local horses and ponies. A skull length of 443.07±53.57 mm and a maximum zygomatic width of 169.09±17.64 mm were obtained. The size of donkey skull was between those of local horses and ponies. A skull index of 38.23±0.85, a cranial index of 45.01±2.83 and a facial index of 67.80±3.79 were obtained. Cranial index and skull index were found to be close in value to that of local horses and ponies. The results of this study revealed that donkey had a longer nose than local horse and pony, and the difference of skull length in the three species accounted for the facial length difference.
Se realizó un estudio sobre una serie de 16 cráneos pertenecientes a burros domésticos adultos, de sexo masculino. Se hicieron mediciones craneométricas en 40 partes diferentes de las muestras. Todas las características investigadas se expresaron como media ± desviación estándar, calculándose índices y proporciones cefálicas. Se compararon las mediciones craneométricas e índices cefálicos con los de caballos y ponis de la zona. La longitud del cráneo obtenida fue de 443,07±53,57 mm, con una anchura máxima del hueso cigomático de 169,09±17,64 mm. El tamaño del cráneo del burro se ubicó entre el de los caballos y los ponis locales. Se obtuvo un índice de cráneo de 38,23±0,85, un índice craneal de 45,01±2,83 y un índice facial de 67,80±3,79. Los índices craneal y de cráneo encontrados fueron cercanos a los valores correspondientes a los caballos y ponis locales. Los resultados de este estudio revelaron que el burro tenía una nariz más larga que el caballo y el poni. Además, la diferencia en longitud del cráneo en las tres especies representa la diferencia de longitud facial.