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1.
Biol Lett ; 20(3): 20230581, 2024 03.
Artigo em Inglês | MEDLINE | ID: mdl-38503344

RESUMO

Spatial patterns of phylogenetic diversity (PD) are increasingly becoming relevant for conservation decisions. PD measures are based on phylogenies estimated from molecular data. This paper addresses the question of how different molecular markers impact PD spatial patterns. We first conducted a simple simulation to explore the effect of deep and shallow changes in topology (simulating variations in molecular markers), using ultrametric and non-ultrametric trees, and then used a dataset of Chilean flora with four sets of markers to assess potential differences in spatial patterns of PD ranks using different markers and types of trees. The simulation consistently showed that the difference in PD rank was lower for ultrametric trees than for phylograms. A similar trend was observed using the Chilean flora dataset, with among-markers variability in spatial patterns of the PD metrics lower for ultrametric than for non-ultrametric trees, depicted as top 2.5 and 5% hotspots. Frequency distribution of PD values differed among markers as well, with this variation less apparent for ultrametric trees. We conclude that the choice of markers impacts spatial patterns of PD, and these results vary more strongly for phylograms, suggesting that ultrametric trees are more robust to the choice of marker.


Assuntos
Filogenia , Simulação por Computador , Chile
2.
PLoS One ; 18(7): e0287957, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37406022

RESUMO

As a direct consequence of global change, both natural and human-induced, a high percentage of biodiversity is now under threat worldwide. This has urged conservation planners to formulate and/or improve existing strategies to preserve species and their ecosystems. In this context, the present study focuses on two strategies using phylogeny-based measures of biodiversity to account for the processes that led to the biodiversity patterns observed today. It will contribute additional information that can aid decision-making regarding the assignment of threat status for some species, thus strengthening measures currently in use and facilitate the allocation of often scarce conservation resources. The Evolutionarily Distinct (ED) index prioritises species that are on long branches of the tree of life with few descendants, and the Evolutionarily Distinct and Globally Endangered (EDGE) index integrates evolutionary history with IUCN Red List threat status of species. It has been used mostly in animal groups, but since the threats faced by many plants have not been evaluated, it has been more difficult to compile for plants worldwide. Here, we apply the EDGE metric to species of the endemic genera of Chile. However, more than 50% of the endemic flora of the country are still lacking official threat status. We thus used an alternative measure (Relative Evolutionary Distinctness-RED), based on a range-weighted phylogenetic tree, which uses geographic ranges to adjust branch lengths, and calculate ED. The RED index was shown to be a suitable measure, yielding similar results compared to EDGE, at least for this group of species. Given the urgency to halt biodiversity loss and the time it would take to evaluate all species, we propose that this index is used to set conservation priorities until we can calculate EDGE for these unique endemic species. This would allow guiding decision-making until we can gather more data to assess and assign conservation status to new species.


Assuntos
Ecossistema , Espécies em Perigo de Extinção , Animais , Humanos , Filogenia , Conservação dos Recursos Naturais/métodos , Chile , Biodiversidade
3.
PhytoKeys ; 215: 51-63, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36761092

RESUMO

A new species, Diplostephiumpaposanum S.T.Ibáñez & Muñoz-Schick, sp. nov., is described for Chile, extending the southern distribution of the genus. Its position within the genus was confirmed by morphological and molecular data, discussed here. The new species was found in a coastal environment, new to the genus, and is geographically far removed from the other Chilean species, which are from the Andes. The formation where it occurs, known as lomas, acts as a biodiversity refuge in hyperarid environments. The presence of D.paposanum in this environment contributes to the evidence of a floristic connection between the Atacama Desert and the Neotropical Andes.


ResumenSe describe una nueva especie para Chile, Diplostephiumpaposanum S.T.Ibáñez & Muñoz-Schick, sp. nov., extendiendo la distribución austral del género. Su posición dentro del género fue confirmada por datos morfológicos y moleculares, discutidos acá. La nueva especie se encontró en un ambiente costero, nuevo para el género, y está geográficamente alejada de las otras especies chilenas, que son de los Andes. La formación donde habita, conocida como lomas, actúa como refugio de la biodiversidad en ambientes hiperáridos. La presencia de D.paposanum en este ambiente contribuye a la evidencia de una conexión florística entre el Desierto de Atacama y los Andes Neotropicales.

5.
Mol Phylogenet Evol ; 112: 88-95, 2017 07.
Artigo em Inglês | MEDLINE | ID: mdl-28450227

RESUMO

Current geographic patterns of biodiversity are a consequence of the evolutionary history of the lineages that comprise them. This study was aimed at exploring how evolutionary features of the vascular flora of Chile are distributed across the landscape. Using a phylogeny at the genus level for 87% of the Chilean vascular flora, and a geographic database of sample localities, we calculated phylogenetic diversity (PD), phylogenetic endemism (PE), relative PD (RPD), and relative PE (RPE). Categorical Analyses of Neo- and Paleo-Endemism (CANAPE) were also performed, using a spatial randomization to assess statistical significance. A cluster analysis using range-weighted phylogenetic turnover was used to compare among grid cells, and with known Chilean bioclimates. PD patterns were concordant with known centers of high taxon richness and the Chilean biodiversity hotspot. In addition, several other interesting areas of concentration of evolutionary history were revealed as potential conservation targets. The south of the country shows areas of significantly high RPD and a concentration of paleo-endemism, and the north shows areas of significantly low PD and RPD, and a concentration of neo-endemism. Range-weighted phylogenetic turnover shows high congruence with the main macrobioclimates of Chile. Even though the study was done at the genus level, the outcome provides an accurate outline of phylogenetic patterns that can be filled in as more fine-scaled information becomes available.


Assuntos
Biodiversidade , Evolução Biológica , Magnoliopsida/genética , Chile , Análise por Conglomerados , Magnoliopsida/classificação , Filogenia
6.
Ecol Evol ; 4(6): 806-16, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24683462

RESUMO

This study uses phylogeny-based measures of evolutionary potential (phylogenetic diversity and community structure) to evaluate the evolutionary value of vascular plant genera endemic to Chile. Endemicity is regarded as a very important consideration for conservation purposes. Taxa that are endemic to a single country are valuable conservation targets, as their protection depends upon a single government policy. This is especially relevant in developing countries in which conservation is not always a high resource allocation priority. Phylogeny-based measures of evolutionary potential such as phylogenetic diversity (PD) have been regarded as meaningful measures of the "value" of taxa and ecosystems, as they are able to account for the attributes that could allow taxa to recover from environmental changes. Chile is an area of remarkable endemism, harboring a flora that shows the highest number of endemic genera in South America. We studied PD and community structure of this flora using a previously available supertree at the genus level, to which we added DNA sequences of 53 genera endemic to Chile. Using discrepancy values and a null model approach, we decoupled PD from taxon richness, in order to compare their geographic distribution over a one-degree grid. An interesting pattern was observed in which areas to the southwest appear to harbor more PD than expected by their generic richness than those areas to the north of the country. In addition, some southern areas showed more PD than expected by chance, as calculated with the null model approach. Geological history as documented by the study of ancient floras as well as glacial refuges in the coastal range of southern Chile during the quaternary seem to be consistent with the observed pattern, highlighting the importance of this area for conservation purposes.

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