RESUMO
Computational Intelligence Re-meets Medical Image Processing A Comparison of Some Nature-Inspired Optimization Metaheuristics Applied in Biomedical Image Registration BACKGROUND: Diffuse lung diseases (DLDs) are a diverse group of pulmonary disorders, characterized by inflammation of lung tissue, which may lead to permanent loss of the ability to breathe and death. Distinguishing among these diseases is challenging to physicians due their wide variety and unknown causes. Computer-aided diagnosis (CAD) is a useful approach to improve diagnostic accuracy, by combining information provided by experts with Machine Learning (ML) methods. OBJECTIVES: Exploring the potential of dimensionality reduction combined with ML methods for diagnosis of DLDs; improving the classification accuracy over state-of-the-art methods. METHODS: A data set composed of 3252 regions of interest (ROIs) was used, from which 28 features were extracted per ROI. We used Principal Component Analysis, Linear Discriminant Analysis, and Stepwise Selection - Forward, Backward, and Forward-Backward to reduce feature dimensionality. The feature subsets obtained were used as input to the following ML methods: Support Vector Machine, Gaussian Mixture Model, k-Nearest Neighbor, and Deep Feedforward Neural Network. We also applied a Deep Convolutional Neural Network directly to the ROIs. RESULTS: We achieved the maximum reduction from 28 to 5 dimensions using LDA. The best classification results were obtained by DFNN, with 99.60% of overall accuracy. CONCLUSIONS: This work contributes to the analysis and selection of features that can efficiently characterize the DLDs studied.
Assuntos
Algoritmos , Diagnóstico por Computador , Pneumopatias/diagnóstico , Aprendizado de Máquina , Análise Discriminante , Humanos , Análise de Componente Principal , Fatores de TempoRESUMO
The last decade witnessed a growing interest in research on content-based image retrieval (CBIR) and related areas. Several systems for managing and retrieving images have been proposed, each one tailored to a specific application. Functionalities commonly available in CBIR systems include: storage and management of complex data, development of feature extractors to support similarity queries, development of index structures to speed up image retrieval, and design and implementation of an intuitive graphical user interface tailored to each application. To facilitate the development of new CBIR systems, we propose an image-handling extension to the relational database management system (RDBMS) PostgreSQL. This extension, called PostgreSQL-IE, is independent of the application and provides the advantage of being open source and portable. The proposed system extends the functionalities of the structured query language SQL with new functions that are able to create new feature extraction procedures, new feature vectors as combinations of previously defined features, and new access methods, as well as to compose similarity queries. PostgreSQL-IE makes available a new image data type, which permits the association of various images with a given unique image attribute. This resource makes it possible to combine visual features of different images in the same feature vector. To validate the concepts and resources available in the proposed extended RDBMS, we propose a CBIR system applied to the analysis of mammograms using PostgreSQL-IE.
Assuntos
Armazenamento e Recuperação da Informação/métodos , Linguagens de Programação , Sistemas de Informação em Radiologia , Doenças Mamárias/diagnóstico por imagem , Feminino , Humanos , MamografiaRESUMO
We propose the design of a teaching system named Interpretation and Diagnosis of Mammograms (INDIAM) for training students in the interpretation of mammograms and diagnosis of breast cancer. The proposed system integrates an illustrated tutorial on radiology of the breast, that is, mammography, which uses education techniques to guide the user (doctors, students, or researchers) through various concepts related to the diagnosis of breast cancer. The user can obtain informative text about specific subjects, access a library of bibliographic references, and retrieve cases from a mammographic database that are similar to a query case on hand. The information of each case stored in the mammographic database includes the radiological findings, the clinical history, the lifestyle of the patient, and complementary exams. The breast cancer tutorial is linked to a module that simulates the analysis and diagnosis of a mammogram. The tutorial incorporates tools for helping the user to evaluate his or her knowledge about a specific subject by using the education system or by simulating a diagnosis with appropriate feedback in case of error. The system also makes available digital image processing tools that allow the user to draw the contour of a lesion, the contour of the breast, or identify a cluster of calcifications in a given mammogram. The contours provided by the user are submitted to the system for evaluation. The teaching system is integrated with AMDI-An Indexed Atlas of Digital Mammograms-that includes case studies, e-learning, and research systems. All the resources are accessible via the Web.
Assuntos
Instrução por Computador , Educação Médica Continuada , Mamografia , Interpretação de Imagem Radiográfica Assistida por Computador , HumanosRESUMO
Malignant breast tumors typically appear in mammograms with rough, spiculated, or microlobulated contours, whereas most benign masses have smooth, round, oval, or macrolobulated contours. Several studies have shown that shape factors that incorporate differences as above can provide high accuracies in distinguishing between malignant tumors and benign masses based upon their contours only. However, global measures of roughness, such as compactness, are less effective than specially designed features based upon spicularity and concavity. We propose a method to derive polygonal models of contours that preserve spicules and details of diagnostic importance. We show that an index of spiculation derived from the turning functions of the polygonal models obtained by the proposed method yields better classification accuracy than a similar measure derived using a previously published method. The methods were tested with a set of 111 contours of 65 benign masses and 46 malignant tumors. A high classification accuracy of 0.94 in terms of the area under the receiver operating characteristics curve was obtained.
Assuntos
Algoritmos , Neoplasias da Mama/diagnóstico por imagem , Mamografia/métodos , Modelos Biológicos , Reconhecimento Automatizado de Padrão/métodos , Intensificação de Imagem Radiográfica/métodos , Interpretação de Imagem Radiográfica Assistida por Computador/métodos , Simulação por Computador , Feminino , Humanos , Reprodutibilidade dos Testes , Sensibilidade e EspecificidadeRESUMO
Malignant breast tumors and benign masses appear in mammograms with different shape characteristics: the former usually have rough, spiculated, or microlobulated contours, whereas the latter commonly have smooth, round, oval, or macrolobulated contours. Features that characterize shape roughness and complexity can assist in distinguishing between malignant tumors and benign masses. Signatures of contours may be used to analyze their shapes. We propose to use a signature based on the turning angle function of contours of breast masses to derive features that capture the characteristics of shape roughness as described above. We propose methods to derive an index of the presence of convex regions (XR ( TA )), an index of the presence of concave regions (VR ( TA )), an index of convexity (CX ( TA )), and two measures of fractal dimension (FD ( TA ) and FDd ( TA )) from the turning angle function. The methods were tested with a set of 111 contours of 65 benign masses and 46 malignant tumors with different parameters. The best classification accuracies in discriminating between benign masses and malignant tumors, obtained for XR ( TA ), VR ( TA ), CX ( TA ), FD ( TA ), and FDd ( TA ) in terms of the area under the receiver operating characteristics curve, were 0.92, 0.92, 0.93, 0.93, and, 0.92, respectively.
Assuntos
Algoritmos , Neoplasias da Mama/diagnóstico por imagem , Reconhecimento Automatizado de Padrão/métodos , Interpretação de Imagem Radiográfica Assistida por Computador/métodos , Neoplasias da Mama/patologia , Simulação por Computador , Feminino , Fractais , Humanos , MamografiaRESUMO
Malignant breast tumors typically appear in mammograms with rough, spiculated, or microlobulated contours, whereas most benign masses have smooth, round, oval, or macrolobulated contours. Several studies have shown that shape factors that incorporate differences as above can provide high accuracies in distinguishing between malignant tumors and benign masses based upon their contours only. However, global measures of roughness, such as compactness, are less effective than specially designed features based upon spicularity and concavity. We propose a method to derive polygonal models of contours that preserve spicules and details of diagnostic importance. We show that an index of spiculation derived from the turning functions of the polygonal models obtained by the proposed method yields better classification accuracy than a similar measure derived using a previously published method. The methods were tested with a set of 111 contours of 65 benign masses and 46 malignant tumors. A high classification accuracy of 0.93 in terms of the area under the receiver operating characteristics curve was obtained.