RESUMO
Genome-wide association studies (GWASes) have become a powerful tool for identifying genomic regions associated with important traits in livestock. Milk production traits in dairy sheep are measured at different time points during their life span. Using phenotypic data generated from longitudinal traits could improve the power of association studies but until now have received less attention in GWASes as a methodology and has not been implemented. The aim of this study was to carry out a GWAS for milk production traits in Valle del Belice sheep using repeated measures. After quality control, 469 ewes and 37 228 SNPs were retained for the analysis, and phenotypic data included 5586 test-day records for five milk production traits (milk yield, MY; fat yield and percentage, FY and F%; protein yield and percentage, PY and P%). Nine SNPs located within or close to known genes were found to be associated with milk production traits. In particular, rs398340969, associated with both milk yield and protein yield, is located within the DCPS gene. In addition, rs425417915 and rs417079368, both associated with both fat percentage and protein percentage, are located within the TTC7B gene and at 0.37 Mb within the SUCNR1 gene respectively. In summary, the use of repeated records was beneficial for mapping genomic regions affecting milk production traits in the Valle del Belice sheep.
Assuntos
Estudo de Associação Genômica Ampla/veterinária , Leite , Carneiro Doméstico/genética , Carneiro Doméstico/fisiologia , Animais , Feminino , Polimorfismo de Nucleotídeo Único , Carneiro Doméstico/classificaçãoRESUMO
Microtia is a congenital deformity of the outer ear with phenotypes varying from a small auricle to total absence (anotia). The genetic basis is still poorly understood, and very few studies have been performed in sheep. Valle del Belice sheep is a breed showing microtia. The aim of this study was to identify the potential genomic regions involved in microtia in sheep. A total of 40 individuals, 20 with microtia and 20 normal, were genotyped with the Illumina OvineSNP50 BeadChip. The comparison among the results from a genome-wide association study, Fisher's exact test and FST analysis revealed a single strong association signal: rs419889303 on chromosome 1, located within intron 3 of the CLRN1 gene. Our study suggests for the first time that this novel candidate gene is responsible for microtia in sheep. Additional analysis based on the sequencing would help confirm our findings and allow for the proposal of a precise genetic basis for microtia in sheep.
Assuntos
Microtia Congênita/genética , Proteínas de Membrana/genética , Doenças dos Ovinos/genética , Carneiro Doméstico/genética , Animais , Cruzamento , Estudos de Associação Genética/veterinária , Genótipo , Polimorfismo de Nucleotídeo Único , OvinosRESUMO
The aim of this work was to sequence the promoter region of ß-lactoglobulin (BLG) gene in four sheep breeds, in order to identify polymorphisms, infer and analyze haplotypes, and phylogenetic relationship among the Valle del Belice breed and the other three breeds considered as ancestors. Sequencing analysis and alignment of the obtained sequences showed the presence of 36 single nucleotide polymorphisms (SNPs) and one deletion. A total of 22 haplotypes found in "best" reconstruction were inferred considering the 37 polymorphic sites identified. Haplotypes were used for the reconstruction of a phylogenetic tree using the Neighbor-Joining algorithm. The number of polymorphisms identified showed high variability within breeds. Analysis of genetic diversity indexes showed that the Sarda breed presented the lowest nucleotide diversity, whereas the Comisana breed presented the highest one. Comparing the nucleotide diversity among breeds, the highest value was obtained between Valle del Belice and Pinzirita breeds, whereas the lowest one was between Valle del Belice and Sarda breeds. Considering that polymorphisms in the promoter region of BLG gene could have a functional role associated with milk composition, the lowest value of nucleotide diversity between Valle del Belice and Sarda breeds may be related to a higher similarity of milk composition of these two breeds compared to the others. Further analyses will be conducted in order to evaluate the possible correlation between the genetic diversity indexes and the BLG content in milk of our breeds.
Assuntos
Variação Genética , Lactoglobulinas/genética , Leite/química , Filogenia , Polimorfismo de Nucleotídeo Único/genética , Ovinos/genética , Animais , Sequência de Bases , Cruzamento/métodos , Análise por Conglomerados , Primers do DNA/genética , Haplótipos/genética , Modelos Genéticos , Dados de Sequência Molecular , Regiões Promotoras Genéticas/genética , Alinhamento de Sequência , Análise de Sequência de DNA , Especificidade da EspécieRESUMO
The objectives of this study were to evaluate the effect of somatic cell count (SCC) on functional longevity and to estimate the heritability of functional longevity using survival analysis in Valle del Belice dairy sheep. A total of 4,880 lactations of 2,190 ewes from 11 flocks were used. In this study, SCC was considered as an indication of subclinical mastitis. In case of clinical cases, identified by the technicians at milking time, test-day weights and milk samples of those ewes were not considered. Somatic cells were analyzed as counts, without any transformation, and were grouped in 3 classes based on the observed SCC maximum (mxSCC). The mxSCC classes, expressed as 10(3) cells/mL, were classified as 1 if mxSCC
Assuntos
Longevidade/genética , Mastite/veterinária , Leite/citologia , Ovinos/fisiologia , Animais , Contagem de Células , Indústria de Laticínios , Feminino , Mastite/fisiopatologia , Modelos Biológicos , Característica Quantitativa Herdável , Ovinos/genética , Análise de SobrevidaRESUMO
Test day models were used to estimate the lactation curves for Valle del Belice ewes and to study the main environmental effects on milk yield and on percentage of fat and protein. Environmental effects were treated as fixed. A random effect was associated with each lactation to evaluate the mean correlation among all test day records of an individual ewe. Lactation curves were constructed by adding solutions for classes of either days in milk nested within parity or days in milk nested within season of lambing to appropriate general means. Parity primarily affected the lactation curve for milk yield, which was lower and flatter for first lambing ewes; effects on fat and protein were smaller. Season of lambing affected all traits. Seasonal productivity had the greatest effect on milk composition, resulting in an imbalance between fat and protein percentages. Flock and feed supplementation affected only the lactation curve for milk yield. The lactation curve of Valle del Belice ewes stood at a relatively high level. However, the presence of notable, perturbative effects (environmental and random variation) on milk yield and composition suggests that management is unable to meet the requirements of ewes consistently.