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1.
PeerJ Comput Sci ; 10: e1953, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38660169

RESUMO

Melanoma is the most aggressive and prevalent form of skin cancer globally, with a higher incidence in men and individuals with fair skin. Early detection of melanoma is essential for the successful treatment and prevention of metastasis. In this context, deep learning methods, distinguished by their ability to perform automated and detailed analysis, extracting melanoma-specific features, have emerged. These approaches excel in performing large-scale analysis, optimizing time, and providing accurate diagnoses, contributing to timely treatments compared to conventional diagnostic methods. The present study offers a methodology to assess the effectiveness of an AlexNet-based convolutional neural network (CNN) in identifying early-stage melanomas. The model is trained on a balanced dataset of 10,605 dermoscopic images, and on modified datasets where hair, a potential obstructive factor, was detected and removed allowing for an assessment of how hair removal affects the model's overall performance. To perform hair removal, we propose a morphological algorithm combined with different filtering techniques for comparison: Fourier, Wavelet, average blur, and low-pass filters. The model is evaluated through 10-fold cross-validation and the metrics of accuracy, recall, precision, and the F1 score. The results demonstrate that the proposed model performs the best for the dataset where we implemented both a Wavelet filter and hair removal algorithm. It has an accuracy of 91.30%, a recall of 87%, a precision of 95.19%, and an F1 score of 90.91%.

2.
F1000Res ; 12: 14, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-38826575

RESUMO

Background: Glaucoma and diabetic retinopathy (DR) are the leading causes of irreversible retinal damage leading to blindness. Early detection of these diseases through regular screening is especially important to prevent progression. Retinal fundus imaging serves as the principal method for diagnosing glaucoma and DR. Consequently, automated detection of eye diseases represents a significant application of retinal image analysis. Compared with classical diagnostic techniques, image classification by convolutional neural networks (CNN) exhibits potential for effective eye disease detection. Methods: This paper proposes the use of MATLAB - retrained AlexNet CNN for computerized eye diseases identification, particularly glaucoma and diabetic retinopathy, by employing retinal fundus images. The acquisition of the database was carried out through free access databases and access upon request. A transfer learning technique was employed to retrain the AlexNet CNN for non-disease (Non_D), glaucoma (Sus_G) and diabetic retinopathy (Sus_R) classification. Moreover, model benchmarking was conducted using ResNet50 and GoogLeNet architectures. A Grad-CAM analysis is also incorporated for each eye condition examined. Results: Metrics for validation accuracy, false positives, false negatives, precision, and recall were reported. Validation accuracies for the NetTransfer (I-V) and netAlexNet ranged from 89.7% to 94.3%, demonstrating varied effectiveness in identifying Non_D, Sus_G, and Sus_R categories, with netAlexNet achieving a 93.2% accuracy in the benchmarking of models against netResNet50 at 93.8% and netGoogLeNet at 90.4%. Conclusions: This study demonstrates the efficacy of using a MATLAB-retrained AlexNet CNN for detecting glaucoma and diabetic retinopathy. It emphasizes the need for automated early detection tools, proposing CNNs as accessible solutions without replacing existing technologies.


Assuntos
Retinopatia Diabética , Glaucoma , Redes Neurais de Computação , Humanos , Retinopatia Diabética/diagnóstico por imagem , Retinopatia Diabética/diagnóstico , Glaucoma/diagnóstico , Glaucoma/diagnóstico por imagem , Inteligência Artificial
3.
Front Vet Sci ; 9: 1031192, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36467651

RESUMO

The welfare of working equids in developing countries is sometimes threatened due to the limited resources and/or knowledge of their owners. The objective of this study is to evaluate the welfare of creole horses and mules using a validated protocol that assesses animal-based indicators. A total of 160 horses and 40 mules from three municipalities in the Colombian coffee-growing region were evaluated by means of direct observation of health and behavioral parameters. A descriptive analysis of the variables expressed in proportions was performed. Interactions between the different measurements were examined using the Chi-squared test. Spearman correlations were used to relate the measurements. Horses and mules demonstrated friendly behavior in front of the evaluators (78.13 and 61.54%, respectively); apathetic or severely depressed behavior was low (10.7 and 17.5%, P > 0.05). Significant differences in body condition score (BCS) were observed between mules and horses (P < 0.05); eighty percent of the mules and 54.4% of the horses exhibited a healthy body condition score (3 or more on a scale of 1 to 5). Less than 15% of the animals had eye problems, limb deformities, and gait abnormalities. Injuries to the head, withers, spine, ribs/flank, hindquarters, and hind legs were observed in a frequency between 12.5 and 30.43% of the animals, with a higher frequency in horses (P < 0.05). Weak correlations (R2 coefficient < 0.5), although statistically significant, were observed between low body conditions and the presence of skin and deeper tissue lesions, systemic health abnormalities, and limb problems (P < 0.05). The results indicate that owners care for their animals. However, the presence of skin and deep tissue lesions, especially in horses, suggests that they are subjected to high workloads. Therefore, it is essential to train owners in aspects related to the importance of providing their equids with adequate rest periods to recover from work and develop actions to strengthen human-equine interaction.

4.
F1000Res ; 11: 164, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35360826

RESUMO

Atmospheric nitrogen fixation carried out by microorganisms has environmental and industrial importance, related to the increase of soil fertility and productivity. The present work proposes the development of a new high precision system that allows the recognition of amino acid sequences of the nitrogenase enzyme (NifH) as a promising way to improve the identification of diazotrophic bacteria. For this purpose, a database obtained from UniProt built a processed dataset formed by a set of 4911 and 4782 amino acid sequences of the NifH and non-NifH proteins respectively. Subsequently, the feature extraction was developed using two methodologies: (i) k-mers counting and (ii) embedding layers to obtain numerical vectors of the amino acid chains. Afterward, for the embedding layer, the data was crossed by an external trainable convolutional layer, which received a uniform matrix and applied convolution using filters to obtain the feature maps of the model. Finally, a deep neural network was used as the primary model to classify the amino acid sequences as NifH protein or not. Performance evaluation experiments were carried out, and the results revealed an accuracy of 96.4%, a sensitivity of 95.2%, and a specificity of 96.7%. Therefore, an amino acid sequence-based feature extraction method that uses a neural network to detect N-fixing organisms is proposed and implemented. NIFtHool is available from: https://nifthool.anvil.app/.


Assuntos
Bactérias , Redes Neurais de Computação , Oxirredutases , Bactérias/enzimologia , Bactérias/genética , Proteínas de Bactérias/genética , Informática , Oxirredutases/genética , Filogenia
5.
J Med Eng Technol ; 45(7): 532-545, 2021 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-34060967

RESUMO

Nowadays, there are several diseases which affect different systems of the body, producing changes in the correct functioning of the organism and the people lifestyles. One of them is Parkinson's disease (PD), which is defined as a neurodegenerative disorder provoked by the destruction of dopaminergic neurons in the brain, resulting in a set of motor and non-motor symptoms. As this disease affects principally to ancient people, several researchers have studied different treatments and therapies for stopping neurodegeneration and diminishing symptoms, to improve the quality patients' lives. The most common therapies created for PD are based on pharmacological treatment for controlling the degeneration advance and the physical ones which do not reveal the progress of patients. For this reason, this review paper opens the possibility for using wearable motion capture systems as an option for the control and study of PD. Therefore, it aims to (1) study the different wearable systems used for capture the movements of PD patients and (2) determine which of them bring better results for monitoring and assess PD people. For the analysis, it uses papers based on experiments that prove the functioning of several motion systems in different aspects as monitoring, treatment and diagnose of the disease. As a result, it works with 30 papers which describe the factors mentioned before. Additionally, the paper uses journals and literature review about the pathology, its characteristics and the function of wearable sensors for the correct understanding of the topic.


Assuntos
Doença de Parkinson , Dispositivos Eletrônicos Vestíveis , Encéfalo , Humanos , Movimento (Física) , Movimento , Doença de Parkinson/diagnóstico
6.
Salud pública Méx ; 41(supl.2): 109-13, 1999. tab, graf
Artigo em Inglês | LILACS | ID: lil-276230

RESUMO

Objetivo. En la búsqueda de nuevos marcadores genotóxicos aplicables a estudios de poblaciones humanas expuestos a xenobióticos, la utilización del ensayo de electroforesis en una sola célula se ha propuesto como un método sensible y una buena alternativa. Material y métodos. Esta técnica detecta rompimientos en el ADN de cadena sencilla, así como sitios álcali lábiles y sitios retardados de reparación. Resultados. En este trabajo, presentamos nuestra experiencia utilizando este ensayo en poblaciones humanas expuestas ocupacionalmente o ambientalmente a diferentes xenobióticos. Conclusiones. Se discute la posible utilidad de este ensayo como un biomarcador de efecto genotóxico


Assuntos
Eletroforese em Gel de Ágar , México , Poluição Ambiental/análise , Poluição Ambiental/efeitos adversos , Indicadores de Contaminação , Biomarcadores , Arsenicais
7.
Rev. bras. reumatol ; Rev. bras. reumatol;37(2): 113-7, mar.-abr. 1997. ilus
Artigo em Português | LILACS | ID: lil-210203

RESUMO

Os autores apresentam um caso clínico de um doente do sexo feminino de 59 anos de idade com poliartrite assimétrica, seronegativa, näo nodular, näo erosiva e näo deformante, com três anos de evoluçäo. Simultaneamente com o quadro articular, a doente apresentou condrite nasal e auricular bilateral. Em dezembro de 1994, foi internada por dispnéia intensa, näo tolerando o decúbito, e expectoraçäo mucosa. A tomografia computadorizada (TC) do tórax e a broncofibroscopia revelaram diminuiçäo do calibre da traquéia e dos brônquios principais, com colapso da sua parede posterior e ausência quase completa dos anéis da traquéia. A terapêutica com corticosteróide e com broncodilatadores näo foi eficaz, pelo que foi colocada prótese dinâmica de Freitag. Durante a colocaçäo da prótese a doente fez parada cardiorrespiratória e faleceu. Näo se encontra descrita uma traqueobroncomalácia täo marcada como neste caso. Os casos descritos referem-se apenas a traqueomalácia sem envolvimento brônquio explícito, o que acentua mais a gravidade e raridade deste caso clínico


Assuntos
Humanos , Feminino , Pessoa de Meia-Idade , Policondrite Recidivante , Próteses e Implantes
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