RESUMO
Polybrominated diphenyl ethers (PBDEs) are widely distributed compounds in all types of matrices. In the northern portion of the Southern California Bight (SCB), there were reports of some of the largest PBDE concentrations in marine mammals and mussels. Because of this, we decided to analyze the status of PBDEs in the southern part of the SCB. An analysis of 91 samples of marine surface sediment was carried out. All of the 91 samples contained measurable amounts of PBDEs, which is a manifestation of the widespread distribution of these chemical substances. However, the levels detected are between one and two orders of magnitude smaller than those reported in southern California. Currents appear to control the distribution of PBDEs along the coast and the sedimentation sites with largest concentrations are favored by local bathymetry. Maximum concentrations were located in the middle and deeper platforms ranging from 0.02 to 5.90 (with a median 0.71) ng·g(-1) d.w. Deca-BDE mixture is largely predominant in the sediments followed by the penta-BDE mixture. The mass balance for the latitudinal strata shows the largest concentrations in the north where the largest population centers are present and with a very clear southward gradient. The mass balance calculation values showed about 36kg of PBDEs for the north, 22kg for the center, and 10kg for the south strata. In terms of depth, the PBDEs are mainly located on the middle and deep platforms rather than near point discharges, which is different than that reported by other authors.
Assuntos
Sedimentos Geológicos/análise , Éteres Difenil Halogenados/análise , Poluentes Químicos da Água/análise , Monitoramento Ambiental , México , Oceano Pacífico , Água do Mar/químicaRESUMO
The nucleotide sequences of genomic segments S7 and S9 of Mal de Río Cuarto virus (MRCV, Fijivirus group II) have been determined, thus completing the entire genome sequence of the virus. These segments showed a non-overlapping bicistronic structure, as in other members of the genus. MRCV S7 ORF-1 had a length of 1086 bp and encoded a 41.5 kDa putative polypeptide, whereas MRCV S7 ORF-2 had a length of 930 bp and encoded a 36.8 kDa putative polypeptide. Proteins of 39 and 20.5 kDa were predicted for the 1014 bp long MRCV S9 ORF-1 and the 537 bp long MRCV S9 ORF-2, respectively. The terminal 5' and 3' sequences of both segments were 5'AAGUUUUU3' and 5'CAGCUnnnGUC3', respectively. Specific imperfect inverted repeats of each segment were identified. Comparison of the predicted proteins with those of related virus genome segments counterparts in maize rough dwarf virus (MRDV) and rice black streaked dwarf virus (RBSDV), showed 64.5-44.3% identities. These values are lower than those resulting from comparisons between MRDV and RBSDV. The topology of the trees obtained using the complete nucleotide and amino acid sequences of MRCV S7 and MRCV S9 was consistent with the analysis of the other MRCV segments previously published.
Assuntos
Genoma Viral , Reoviridae/genética , Regiões 3' não Traduzidas , Regiões 5' não Traduzidas , Sequência de Bases , Clonagem Molecular , Biologia Computacional , Filogenia , Reoviridae/classificação , Homologia de Sequência do Ácido NucleicoRESUMO
This is the first sequence-based characterization of Mal de Río Cuarto virus (MRCV), currently classified as a variant of Maize rough dwarf virus (MRDV) and exclusively found in South America. We sequenced and analyzed genome segments S4 and S8. MRCV S4 coded for a putative 131.67 kDa protein while MRCV S8 coded for a putative 68.26 kDa protein containing an ATP/GTP-binding motif. The 5' and 3' ends of MRCV segments, were 5'AAGUUUUU3' and 5'CAGCUnnnGUC3', respectively. Prediction of secondary structure of both segments coding strands showed that terminal regions were able to form structures that are proposed to be replication and packaging signals. MRCV S4 showed identity to members of Fijivirus as well as to two other genera of the Reoviridae family. MRCV S8 revealed identity with Rice black streaked dwarf virus (RBSDV) S8, MRDV S7, Oat sterile dwarf virus (OSDV) S9 and Nilaparvata lugens reovirus (NLRV) S7. While MRDV and RBSDV segments are highly homologous between each other, MRCV identity levels with them was considerably lower. We discussed the evolutionary relationships of MRCV to other Reoviridae, and based on phylogenetic analysis we proposed that although MRCV is related to MRDV, it could be regarded as a new species of the Fijivirus genus.