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Batrachochytrium dendrobatidis (Bd) is a lethal fungal species that parasitizes vertebrates and is associated with the worldwide decline of amphibian populations. The development of sensitive, rapid detection methods, particularly DNA-based techniques, is critical for effective management strategies. This study evaluates the efficacy of DNA extraction and a portable PCR device in a mountable field laboratory setup for detecting Bd near the habitats of three critically endangered Atelopus toad species in Ecuador. We collected skin swabs from Atelopus balios, A. nanay, and A. bomolochos, and environmental DNA (eDNA) samples from streams in Andean and coastal regions of Ecuador. For eDNA, a comparison was made with duplicates of the samples that were processed in the field and in a standard university laboratory. Our findings revealed Bd detection in eDNA and swabs from 6 of 12 water samples and 10 of 12 amphibian swab samples. The eDNA results obtained in the field laboratory were concordant with those obtained under campus laboratory conditions. These findings highlight the potential of field DNA-based monitoring techniques for detecting Bd in amphibian populations and their aquatic habitats, particularly in remote areas. Furthermore, this research aligns with the National Action Plan for the Conservation of Ecuadorian Amphibians and contributes to the global effort to control this invasive and deadly fungus.

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Genera and species of Elmidae (riffle beetles) are sensitive to water pollution; however, in tropical freshwater ecosystems, their requirements regarding environmental factors need to be investigated. Species distribution models (SDMs) were established for five elmid genera in the Paute river basin (southern Ecuador) using the Random Forest (RF) algorithm considering environmental variables, i.e., meteorology, land use, hydrology, and topography. Each RF-based model was trained and optimised using cross-validation. Environmental variables that explained most of the Elmidae spatial variability were land use (i.e., riparian vegetation alteration and presence/absence of canopy), precipitation, and topography, mainly elevation and slope. The highest probability of occurrence for elmids genera was predicted in streams located within well-preserved zones. Moreover, specific ecological niches were spatially predicted for each genus. Macrelmis was predicted in the lower and forested areas, with high precipitation levels, towards the Amazon basin. Austrelmis was predicted to be in the upper parts of the basin, i.e., páramo ecosystems, with an excellent level of conservation of their riparian ecosystems. Austrolimnius and Heterelmis were also predicted in the upper parts of the basin but in more widespread elevation ranges, in the Heterelmis case, and even in some areas with a medium level of anthropisation. Neoelmis was predicted to be in the mid-region of the study basin in high altitudinal streams with a high degree of meandering. The main findings of this research are likely to contribute significantly to local conservation and restoration efforts being implemented in the study basin and could be extrapolated to similar eco-hydrological systems.

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The Peruvian environmental action plan seeks headwaters protection as one of its integrated watershed management objectives. However, heterogeneous social and environmental conditions shape this freshwater management challenge at subnational scales. We have noticed different interpretations of this challenge. To map the debate, understand the diverse interpretations, and frame political choices, we conducted semi-structured interviews with institutional and non-institutional stakeholders for performing discourse analysis in an Andean watershed where mountaintop gold mining, midstream farmers, and the downstream Cajamarca city coexist. One discourse dominates the debate on protecting the freshwater supply and argues the importance of river impoundment, municipal storage capacity, and institutional leadership. The other two discourses revolve around protecting the mountain aquifer. The second discourse does so with a fatalistic view of headwaters protection and rural support. The third discourse partially shifts the debate towards the need for improving rural capacity building and (ground)water inventories. To understand evolutions in society, it is crucial to understand these three discourses, including the types of knowledge that actors present as legitimate, the attributed roles to all stakeholders, and the kinds of worldviews informing each discourse. The interaction among discourses could hinder integrated watershed management at worst or, at best, help inspire multi-stakeholder collaboration.

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Mangrove wetlands provide essential ecosystem services such as coastal protection and fisheries. Metal pollution due to industrial and agricultural activities represents an issue of growing concern for the Guayas River Basin and related mangroves in Ecuador. Fisheries and the related human consumption of mangrove crabs are in need of scientific support. In order to protect human health and aid river management, we analyzed several elements in the Guayas Estuary. Zn, Cu, Ni, Cr, As, Pb, Cd, and Hg accumulation were assessed in different compartments of the commercial red mangrove crab Ucides occidentalis (hepatopancreas, carapax, and white meat) and the environment (sediment, leaves, and water), sampled at fifteen sites over five stations. Consistent spatial distribution of metals in the Guayas estuary was found. Nickel levels in the sediment warn for ecological caution. The presence of As in the crabs generated potential concerns on the consumers' health, and a maximum intake of eight crabs per month for adults is advised. The research outcomes are of global importance for at least nine Sustainable Development Goals (SDGs). The results presented can support raising awareness about the ongoing contamination of food and their related ecosystems and the corresponding consequences for environmental and human health worldwide.

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Due to regular influx of organic matter and nutrients, waste stabilization ponds (WSPs) can release considerable quantities of greenhouse gases (GHGs). To investigate the spatiotemporal variations of GHG emissions from WSPs with a focus on the effects of sludge accumulation and distribution, we conducted a bathymetry survey and two sampling campaigns in Ucubamba WSP (Cuenca, Ecuador). The results indicated that spatial variation of GHG emissions was strongly dependent on sludge distribution. Thick sludge layers in aerated ponds and facultative ponds caused substantial CO2 and CH4 emissions which accounted for 21.3% and 78.7% of the total emissions from the plant. Conversely, the prevalence of anoxic conditions stimulated the N2O consumption via complete denitrification leading to a net uptake from the atmosphere, i.e. up to 1.4±0.2 mg-N m-2 d-1. Double emission rates of CO2 were found in the facultative and maturation ponds during the day compared to night-time emissions, indicating the important role of algal respiration, while no diel variation of the CH4 and N2O emissions was found. Despite the uptake of N2O, the total GHG emissions of the WSP was higher than constructed wetlands and conventional centralized wastewater treatment facilities. Hence, it is recommended that sludge management with proper desludging regulation should be included as an important mitigation measure to reduce the carbon footprint of pond treatment facilities.

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Although pesticides are frequently used for agriculture in the Galapagos Islands (Ecuador), there are, to date, no investigations of pesticide occurrences in its coastal waters. We examined the presence of pesticide residues in the coastal waters of urban areas in two islands of the Galapagos archipelago using a repeated sampling design. Quantification was performed by solid-phase extraction, followed by chemical analysis using liquid chromatography-tandem mass spectrometry (LC-MS/MS) and gas chromatography-electron capture detector (GC-ECD). The diversity and concentration of pesticide residues in Santa Cruz island were higher compared to Isabela island. In total, sixteen pesticides were detected, including three persistent organic pollutants. Carbendazim (23.93 µg·L-1), cadusafos (4.74 µg·L-1), DDT (2.99 µg·L-1), diuron (1.61 µg·L-1) and aldrin (1.55 µg·L-1) were detected with the highest concentrations between samples. Repetitions in locations show that concentrations of pesticide residues varied considerably in space and time. Comparison with local products indicated agricultural activities on the islands as a possible source. Furthermore, evaluation through ecological risk quotients showed that the observed concentration levels of seven pesticides pose a relatively high risk for three biotic groups (i.e. algae, invertebrates and fishes). Taken together, this study provides insights into the need to regulate, monitor and assess the presence of pesticides in the islands. At a global scale, this study is moreover valuable for the many islands that are facing the same challenges.

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The growth of urbanization worldwide has contributed to the deterioration of the ecological status of water bodies. Efforts at improving the ecological status have been made either in isolated form or by means of integrated measures by stakeholders, but in many cases, these measures have not been evaluated to determine their benefit. In this study, we implemented a scenario analysis to restore the ecological water quality in the Cuenca River and its tributaries, which are located in the southern Andes of Ecuador. For this analysis, an integrated ecological model (IEM) was developed. The IEM linked an urban wastewater system (IUWS) model, which gave satisfactory results in its calibration and validation processes, with ecological models. The IUWS is a mechanistic model that incorporated the river water quality model, a wastewater treatment plant (WWTP) with activated sludge technology, and discharges from the sewage system. The ecological status of the waterways was evaluated with the Andean Biotic Index (ABI), which was predicted using generalized linear models (GLMs). The GLMs were calculated with physicochemical results from the IUWS model. Four scenarios that would enhance the current ecological water quality were analyzed. In these scenarios, the inclusion of a new WWTP with carbon, and with carbon and nitrogen removal as well as the addition of retention tanks before the discharges of combined sewer overflows (CSOs) were assessed. The new WWTP with carbon and nitrogen removal would bring about a better restoration of the ecological water quality due to better nitrogen removal. The retention tanks would help to enhance the ecological status of the rivers during rainy seasons. The integrated model implemented in this study was shown to be an essential tool to support decisions in the Cuenca River basin management.

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The rapid increase and transition to more intensive agricultural activities in developing nations are often leading to misuse and overuse of pesticides, making their environment vulnerable for pesticide accumulation. In the present study, the Guayas river basin was taken as a representative case study to evaluate pesticide contamination of the Ecuadorean freshwater environment. Pesticide contamination was determined at 181 sampling sites by a multi-residue method using solid phase extraction (SPE) and pesticide residues were linked with agricultural land use activities to identify the main pollution sources. Moreover, the biological water quality status based on macroinvertebrate communities was determined at every location and the relation with the occurrence of pesticide residues was further investigated. Results showed that pesticide contamination of the freshwater environment was widely present in the Guayas river basin with detections at 108 sampling sites (60%). A total of 26 pesticide products were identified. Most frequently detected pesticides included cadusafos (62 locations), butachlor (21 locations) and pendimethalin (21 locations), with concentrations up to 0.081, 2.006 and 0.557 µg·L-1 respectively. Pesticide residues detected in this study did not significantly influence the biological water quality (p = 0.69), but were observed to be positively correlated with ammonium concentrations, supporting the assumed combined application of chemical fertilizers and pesticides in agriculture. These pesticide residues were also associated with one or more agricultural crops, with in particular the banana and rice industries identified as major pollution sources. Both high consumption rates and non-specific application methods, such as aerial spraying of banana plantations and application directly into the water layer of irrigated rice fields, may attribute to pesticide contamination of the freshwater environment of the Guayas river basin. It is therefore suggested that measures, e.g. legal regulations and awareness campaigns, taken to prevent environmental pollution and accumulation of pesticides primarily focus on these industries.

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Imitating natural lakes, pond treatment systems inherit a high complexity with interconnected web of biochemical reactions and complex hydraulic processes. As such, its simulation requires a large and integrated model, which has been a challenge for pond engineers. In this study, we develop an all-encompassing model to gain a quantitative and comprehensive understanding of the hydraulic, physicochemical and microbiological conversion processes in the most common pond, a facultative pond. Moreover, to deal with an evitable issue of large mechanistic models as overparameterization leading to poor identifiability, a systematic parameter estimation was implemented. The application of sensitivity analysis reveals the most influential parameters on pond performance. Particularly, physical parameters, such as vertical eddy diffusivity, water temperature, and maximum growth rate of heterotrophs induce the most changes of organic matters while microbial assimilation and ammonia volatilization appear to be main processes for nutrient removal. In contrast, the efficiency of phosphate precipitation and nutrient biological removal via polyphosphate accumulating organisms and denitrifying bacteria is limited. Identifiability problems are addressed mainly by the characterization of light dependence of algal growth, interaction between water temperature and its coefficient, and the growth of autotrophic bacteria while based on the determinant measures, the most important parameter subsets affecting model outputs are related to physical processes and algal activity. After the establishment of the influential and identifiable parameter subset, an automatic calibration with the data collected from Ucubamba pond system (Ecuador) demonstrates the effect of high-altitude climatic conditions on pond behaviors. An aerobic prevailing condition is observed as a result of high light intensity causing accelerated algal activities, hence, leading to the limitation of hydrolysis, anaerobic processes, and the growth of anoxic heterotrophs for denitrification. Furthermore, the output of uncertainty analysis indicates that a large avoidable uncertainty as a result of vast complexity of the applied model can be reduced greatly via a systematic approach for parameter estimation.

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Algal photosynthesis plays a key role in the removal mechanisms of waste stabilization ponds (WSPs), which is indicated in the variations of three parameters, dissolved oxygen, pH, and chlorophyll a. These variations can be considerably affected by extreme climatic conditions at high altitude. To investigate these effects, three sampling campaigns were conducted in a high-altitude WSP in Cuenca (Ecuador). From the collected data, the first application of structure equation modeling (SEM) on a pond system was fitted to analyze the influence of high-altitude characteristics on pond performance, especially on the three indicators. Noticeably, air temperature appeared as the highest influencing factors as low temperature at high altitude can greatly decrease the growth rate of microorganisms. Strong wind and large diurnal variations of temperature, 7-20 °C, enhanced flow efficiency by improving mixing inside the ponds. Intense solar radiation brought both advantages and disadvantages as it boosted oxygen level during the day but promoted algal overgrowth causing oxygen depletion during the night. From these findings, the authors proposed insightful recommendations for future design, monitoring, and operation of high-altitude WSPs. Moreover, we also recommended SEM to pond engineers as an effective tool for better simulation of such complex systems like WSPs.

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We assessed and compared abiotic preferences of aquatic macroinvertebrates in three river basins located in Ecuador, Ethiopia and Vietnam. Upon using logistic regression models we analyzed the relationship between the probability of occurrence of five macroinvertebrate families, ranging from pollution tolerant to pollution sensitive, (Chironomidae, Baetidae, Hydroptilidae, Libellulidae and Leptophlebiidae) and physical-chemical water quality conditions. Within the investigated physical-chemical ranges, nine out of twenty-five interaction effects were significant. Our analyses suggested river basin dependent associations between the macroinvertebrate families and the corresponding physical-chemical conditions. It was found that pollution tolerant families showed no clear abiotic preference and occurred at most sampling locations, i.e. Chironomidae were present in 91%, 84% and 93% of the samples taken in Ecuador, Ethiopia and Vietnam. Pollution sensitive families were strongly associated with dissolved oxygen and stream velocity, e.g. Leptophlebiidae were only present in 48%, 2% and 18% of the samples in Ecuador, Ethiopia and Vietnam. Despite some limitations in the study design, we concluded that associations between macroinvertebrates and abiotic conditions can be river basin-specific and hence are not automatically transferable across river basins in the tropics.

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Aerated lagoons (ALs) are important variants of the pond wastewater treatment technology that have not received much attention in the literature. The hydraulic behaviour of ALs and especially the Facultative aerated lagoons (FALs) is very complex since the aeration in these systems is designed for oxygen transfer but not necessarily to create complete mixing. In this work, the energy expenditure of the aerators was studied by means of a scenario analysis. 3D CFD models (one phase and multiphase) of a 3 ha FAL in a waste stabilization pond system in Cuenca (Ecuador) were built for different configurations of aerators. The thrust produced by the aerators was modelled by an external momentum source applied as velocity vectors into the pond fluid. The predictions of a single phase model were in satisfactory agreement with experimental results. Subsequently, a scenario analysis assessing several aeration schemes with different numbers of aerators in operation were tested with respect to velocity profiles and residence time distribution (RTD) curves. This analysis showed that the aeration scheme with all 10 aerators switched on produces a similar hydraulic behaviour compared to using only 6 or 8 aerators. The current operational schemes comprise of switching off some aerators during the peak hours of the day and operating all 10 aerators during night. This current practice could be economically replaced by continuously operating 4 or 6 aerators without significantly affecting the overall mixing. Furthermore, a continuous mixing regime minimises the sediment oxygen demand enhancing the oxygen levels in the pond.

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The advancement of experimental and computational resources has facilitated the use of computational fluid dynamics (CFD) models as a predictive tool for mixing behaviour in full-scale waste stabilization pond systems. However, in view of combining hydraulic behaviour with a biokinetic process model, the computational load is still too high for practical use. This contribution presents a method that uses a validated CFD model with tracer experiments as a platform for the development of a simpler compartmental model (CM) to describe the hydraulics in a full-scale maturation pond (7 ha) of a waste stabilization ponds complex in Cuenca (Ecuador). 3D CFD models were validated with experimental data from pulse tracer experiments, showing a sufficient agreement. Based on the CFD model results, a number of compartments were selected considering the turbulence characteristics of the flow, the residence time distribution (RTD) curves and the dominant velocity component at different pond locations. The arrangement of compartments based on the introduction of recirculation flow rate between adjacent compartments, which in turn is dependent on the turbulence diffusion coefficient, is illustrated. Simulated RTD's from a systemic tanks-in-series (TIS) model and the developed CM were compared. The TIS was unable to capture the measured RTD, whereas the CM predicted convincingly the peaks and lags of the tracer experiment using only a minimal fraction of the computational demand of the CFD model. Finally, a biokinetic model was coupled to both approaches demonstrating the impact an insufficient hydraulic model can have on the outcome of a modelling exercise. TIS and CM showed drastic differences in the output loads implying that the CM approach is to be used when modelling the biological performance of the full-scale system.

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