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1.
Sci Total Environ ; 955: 176849, 2024 Oct 13.
Artigo em Inglês | MEDLINE | ID: mdl-39406273

RESUMO

The Argentinean Pampean region is essential for global food security, known for its extensive production of soybeans, corn, and wheat. The November to January (NDJ) trimester is critical for rainfed summer crops, as precipitation during this period directly affects soil moisture and crop yields. The El Niño-Southern Oscillation (ENSO), particularly its Oceanic Niño Index (ONI), plays a crucial role in influencing precipitation patterns in this region. This study investigates the spatial correlation between the ONI and NDJ precipitation from 1990 to 2021 sing a 20-year sliding window approach. We conducted Pearson correlation and cluster analyses to identify regions with consistent ONI-precipitation relationships. Our findings reveal notable temporal variability, with a general decrease in correlation strength since the window 1995-2014. This decline is likely driven by changes in ENSO dynamics and the influence of other climate variability modes, highlighting the need to consider factors modulating the ONI-precipitation relationship. Notably, the addition of the strong 2015 El Niño, which exhibited inconsistent precipitation behaviour compared to previous strong El Niño events such as 1997, contributed to this weakening. While the 1997 El Niño brought widespread positive rainfall anomalies, the 2015 event was marked by weaker and even negative precipitation anomalies in part of the region. This difference mirrors similar patterns reported in other parts of South America, such as Ecuador and Coastal Peru, and may be linked to a poleward shift in the jet streams during the 2015/2016 El Niño. The results underscore the complexity of ENSO's impact on regional climate and highlight the need for adaptive agricultural planning. By enhancing the understanding of ONI-precipitation dynamics, this study aims to improve long-term climate predictions and support sustainable agricultural practices in the Pampean region.

2.
Mol Genet Genomics ; 295(4): 837-841, 2020 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-32300860

RESUMO

This work presents a new method and tool to solve a common problem of molecular biologists and geneticists who use molecular markers in their scientific research and developments: curation of sequences. Omic studies conducted by molecular biologists and geneticists usually involve the use of molecular markers. AFLP, cDNA-AFLP, and MSAP are examples of markers that render information at the genomics, transcriptomics, and epigenomics levels, respectively. These three types of molecular markers use adaptors that are the template for PCR amplification. The sequences of the adaptors have to be eliminated for the analysis of the results. Since a large number of sequences are usually obtained in these studies, this clean-up of the data could demand long time and work. To automate this work, an R package, named CleanBSequences, was created that allows the sequences to be curated massively, quickly, without errors and can be used offline. The curating is performed by aligning the forward and/or reverse primers or ends of cloning vectors with the sequences to be removed. After the alignment, new subsequences are generated without biological fragments not desired by the user, i.e., sequences needed by the techniques. In conclusion, the CleanBSequences tool facilitates the work of researchers, reducing time, effort, and working errors. Therefore, the present tool would respond to the problems related to the curation of sequences obtained from the use of some types of molecular markers. In addition to the above, being an open source, CleanBSequences is a flexible tool that has the potential to be used in future improvements to respond to new problems.


Assuntos
Biologia Computacional , Marcadores Genéticos/genética , Biologia Molecular/métodos , Software , Epigenômica/métodos , Genômica/métodos , Anotação de Sequência Molecular/métodos , Alinhamento de Sequência/métodos , Análise de Sequência/métodos , Transcriptoma/genética
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