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1.
Mol Biol Rep ; 51(1): 760, 2024 Jun 14.
Artigo em Inglês | MEDLINE | ID: mdl-38874795

RESUMO

BACKGROUND: The genus Corynorhinus is composed of four recognized species: C. rafinesquii, C. townsendii, C. mexicanus, and C. leonpaniaguae, the latter two being endemic to Mexico. According to the IUCN, C. mexicanus is considered "Near Threatened", as its populations are dwindling and habitats are affected by anthropogenic disturbance. Corynorhinus leonpaniaguae has not been assigned to an IUCN Red List risk category due to its recent description. METHODS AND RESULTS: In this study, the mitochondrial genomes of C. mexicanus and C. leonpaniaguae were assembled and characterized in detail. The mitochondrial genomes (mtDNA) of C. mexicanus and C. leonpaniaguae have lengths of 16,470 and 16,581 bp respectively, with a predominant nucleotide usage of adenine (31.670% and 31.729%, respectively) and thymine (26.15% and 26.18%, respectively). The mtDNA of C. mexicanus and C. leonpaniaguae is composed of 37 coding and non-coding elements: 22 transfer RNAs (tRNA), 13 protein-coding genes (PCGs), two ribosomal RNAs and a non-coding region, the control region, which has a length of 933 bp and 1,149 bp, respectively. All tRNAs exhibited a cloverleaf secondary structure, with the exception of trn-Ser1 which showed a deletion of the dihydrouridine arm in the two species. All PCGs are subjected to purifying selection, with atp8 being the gene showing the highest Ka/Ks value. CONCLUSIONS: These are the first whole mitogenomic resources developed for C. mexicanus and C. leonpaniaguae and enhance our knowledge of the ecology of these species and aid in their conservation.


Assuntos
Quirópteros , Genoma Mitocondrial , RNA de Transferência , Animais , Genoma Mitocondrial/genética , Quirópteros/genética , México , RNA de Transferência/genética , Filogenia , DNA Mitocondrial/genética , RNA Ribossômico/genética
2.
Gene ; 918: 148492, 2024 Aug 05.
Artigo em Inglês | MEDLINE | ID: mdl-38649060

RESUMO

In the species-rich family Vespertilionidae, vesper yellow bats in the genus Rhogeessa include eleven species, three of them endemic to Mexico. These insectivorous bats provide important ecosystem services, including pest control. Even though some aspects of their biology are well- known, only a few genomic resources are available for these species, which limits our understanding of their biology. In this study, we assembled and annotated the mitochondrial genome of four species: R. aenea, R. genowaysi, R. mira, and R. parvula. We generated a phylomitogenomic hypothesis based on translated protein-coding genes for a total of 52 species in the family Vespertilionidae and examined the phylogenetic position of the genus Rhogeessa and species within the family. The AT-rich mitogenomes of R. aenea, R. genowaysi, R. mira, and R. parvula are 16,763, 16,781, 16,807, and 16,794 pb in length, respectively. Each studied mitogenome encodes 13 Protein Coding Genes (PCGs), 22 transfer RNA genes, and 2 rRNA genes, and contains a putative control region (CR). All tRNAs exhibit a 'cloverleaf' secondary structure, except tRNA-Serine-1 that lacked the DHU arm in all studied mitogenomes. Selective pressure analyses indicated that all protein-coding genes are exposed to purifying selection. The phylomitogenomic analysis supported the monophyletic status of the family Vespertilionidae, confirmed the placement of Rhogeessa within the tribe Antrozoini, and clarified phylogenetic relationships within and among subfamilies and tribes in this family. Our results indicate that phylomitogenomics are useful to explore the evolutionary history of vesper bats. The assembly and comprehensive analysis of mitochondrial genomes offer the potential to generate molecular references and resources beneficial for genetic analyses aimed at understanding the ecology and evolution of these remarkable bats.


Assuntos
Quirópteros , Genoma Mitocondrial , Filogenia , Animais , Quirópteros/genética , Quirópteros/classificação , México , RNA de Transferência/genética , Genômica/métodos
3.
BMC Genomics ; 24(1): 527, 2023 Sep 06.
Artigo em Inglês | MEDLINE | ID: mdl-37674108

RESUMO

BACKGROUND: The harsh conditions of high-altitude environments are known to drive the evolution of physiological and morphological traits in endothermic animals. These conditions are expected to result in the adaptive evolution of protein coding genes encoded in mitochondrial genomes that are vital for the oxidative phosphorylation pathway. In this study, we formally tested for signatures of adaptive evolution on mitochondrial protein coding genes in Tapirus pinchaque and other odd-toed ungulates inhabiting high-elevation environments. RESULTS: The AT-rich mitochondrial genome of T. pinchaque is 16,750 bp long. A phylomitogenomic analysis supports the monophyly of the genus Tapirus and families in the Perissodactyla. The ratio of non-synonymous to synonymous substitutions demonstrated that all mitochondrial genes undergo purifying selection in T. pinchaque and other odd ungulates living at high elevations. Over this negative background selection, Branch Models suggested that cox3 and nad6 might be undergoing stronger purifying selection than other mitochondrial protein coding genes. Furthermore, Site Models suggested that one and four sites in nad2 and nad5, respectively, could be experiencing positive selection. However, these results were supported by Likelihood Ratio Tests but not Bayesian Empirical Bayes posterior probabilities. Additional analyses (in DataMonkey) indicated a relaxation of selection strength in nad6, evidence of episodic diversifying selection in cob, and revealed episodic positive/diversifying selection signatures for two sites in nad1, and one site each in nad2 and nad4. CONCLUSION: The mitochondrial genome of T. pinchaque is an important genomic resource for conservation of this species and this study contributes to the understanding of adaptive evolution of mitochondrial protein coding genes in odd-toed ungulates inhabiting high-altitude environments.


Assuntos
Altitude , Genoma Mitocondrial , Animais , Teorema de Bayes , Perissodáctilos/genética , Proteínas Mitocondriais
4.
BMC Zool ; 8(1): 6, 2023 Jun 26.
Artigo em Inglês | MEDLINE | ID: mdl-37357313

RESUMO

BACKGROUND: The Caribbean spiny lobster Panulirus argus is heavily fished throughout its Greater Caribbean and Gulf of Mexico distribution, suggesting a heightened susceptibility to a fisheries collapse. In 2017, a nemertean worm, Carcinonemertes conanobrieni was described from ovigerous females of P. argus in Florida, USA. A year later, the presence of the same egg predator was recorded along the southern Caribbean coast (Colombia). The effect of this egg predator on the reproductive performance, including fecundity, embryo mortality, and reproductive output, of its host is unknown. This study tested whether C. conanobrieni affects embryo mortality, fecundity, and reproductive output in brooding females of P. argus. RESULTS: Artisan fishers caught 90 ovigerous lobsters near Pueblo Viejo, Magdalena, Colombia. Each ovigerous female was examined for the presence/absence of the egg predator. Lobster egg mortality (%), fecundity (nº eggs female-1), and reproductive output (%) were estimated. Prevalence of C. conanobrieni in the studied population was 87.78%. The mean intensity of C. conanobrieni (all life stages) in the population was 11.68 (± 1.98) egg predators per brood mass sample. Infected females brooding late-stage embryos exhibited lower fecundity, lower reproductive performance values, and higher embryo mortality compared to infected females brooding early-stage embryos. Embryo stage and worm infection level negatively impacted fecundity and reproductive output. Worm infection level and the number of adult nemertean worms also negatively affected embryo mortality. CONCLUSIONS: These results demonstrate an adverse effect of C. conanobrieni on the reproductive performance of P. argus. The interactive impact of this egg predator, natural stressors, and anthropogenic stressors on individual P. argus reproductive performance could facilitate losses at large-scale fisheries levels.

5.
Gene ; 863: 147295, 2023 May 05.
Artigo em Inglês | MEDLINE | ID: mdl-36804001

RESUMO

In the species-rich family Phyllostomidae, the genus Macrotus ('big eared' bats) contains only two species; Macrotus waterhousii, distributed in western, central, and southern Mexico, Guatemala and some Caribbean Islands, and Macrotus californicus, distributed in the southwestern USA, and in the Baja California peninsula and the state of Sonora in Mexico. In this study, we sequenced and assembled the mitochondrial genome of Macrotus waterhousii and characterized in detail this genome and that of the congeneric M. californicus. Then, we examined the phylogenetic position of Macrotus in the family Phyllostomidae based on protein coding genes (PCGs). The AT-rich mitochondrial genomes of M. waterhousii and M. californicus are 16,792 and 16,691 bp long, respectively, and each encode 13 PCGs, 22 tRNA genes, 2 rRNA genes, and a putative non-coding control region 1,336 and 1,232 bp long, respectively. Mitochondrial synteny in Macrotus is identical to that reported before for all other cofamilial species. In the two studied species, all tRNAs exhibit a 'typical' cloverleaf secondary structure with the exception of trnS1, which lacks the D arm. A selective pressure analysis demonstrated that all PCGs are under purifying selection. The CR of the two species feature three domains previously reported in other mammals, including bats: extended terminal associated sequences (ETAS), central (CD), and conserved sequence block (CSB). A phylogenetic analysis based on the 13 mitochondrial PCGs demonstrated that Macrotus is monophyletic and the subfamily Macrotinae is a sister group of all remaining phyllostomids in our analysis, except Micronycterinae. The assembly and detailed analysis of these mitochondrial genomes represents a step further to continue improving the understanding of phylogenetic relationships within the species-rich family Phyllostomidae.


Assuntos
Quirópteros , Genoma Mitocondrial , Animais , Genoma Mitocondrial/genética , Quirópteros/genética , Filogenia , México , Sequência de Bases
6.
Gene ; 859: 147189, 2023 Apr 05.
Artigo em Inglês | MEDLINE | ID: mdl-36657651

RESUMO

Scorpions are a group of arachnids with great evolutionary success that comprise more than 2,000 described species. Mitochondrial genomes have been little studied in this clade. We describe and compare different scorpion mitochondrial genomes and analyze their architecture and molecular characteristics. We assembled eight new scorpion mitochondrial genomes from transcriptomic datasets, annotated them, predicted the secondary structures of tRNAs, and compared the nucleotide composition, codon usage, and relative synonymous codon usage of 16 complete scorpion mitochondrial genomes. Lastly, we provided a phylogeny based on all mitochondrial protein coding genes. We characterized the mitogenomes in detail and reported particularities such as dissimilar synteny in the family Buthidae compared to other scorpions, unusual tRNA secondary structures, and unconventional start and stop codons in all scorpions. Our comparative analysis revealed that scorpion mitochondrial genomes exhibit different architectures and features depending on taxonomic identity. We highlight the parvorder Buthida, particularly the family Buthidae, as it invariably exhibited different mitogenome features such as synteny, codon usage, and AT-skew compared to the parvorder Iurida that included the rest of the scorpion families we analyzed in this study. Our results provide a better understanding of the evolution of mitogenome features and phylogenetic relationships in scorpions.


Assuntos
Aracnídeos , Genoma Mitocondrial , Humanos , Animais , Escorpiões/genética , Aracnídeos/genética , Genoma Mitocondrial/genética , Filogenia , Mitocôndrias/genética , RNA de Transferência/genética
7.
Gene ; 849: 146896, 2023 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-36122612

RESUMO

The infraorder Anomura is a species-rich clade of decapod crustaceans recognized by its remarkable disparity in terms of morphology, anatomy, ecology, physiology, and behavior. This study assembled and characterized the complete mitochondrial genomes of two anomuran species, the hermit crab Coenobita clypeatus and the mole crab Emerita talpoida. The AT-rich mitochondrial genomes of C. clypeatus and E. talpoida are 16,469 bp and 15,810 bp long, respectively, and are composed of 13 protein-coding genes (PCGs), two ribosomal RNA genes, and 22 transfer RNA genes. A 1,390 bp and 553 bp long intergenic space is assumed to be the D-loop in C. clypeatus and E. talpoida, respectively. Mitochondrial synteny in C. clypeatus is identical to that reported in other congeneric hermit crabs while synteny in E. talpoida is identical to that described for the confamilial mole crab Stemonopa insignis. No major differences occur between the studied species and their respective congeneric / cofamilial species in terms of nucleotide composition and codon usage profiles of PCGs. Selective pressure analysis in PCGs, rarely conducted in anomuran crabs, indicate that all these mitochondrial PCGs experience purifying selection and that this purifying selection is stronger in some (i.e., cox family genes and cob) compared to other PCGs (e.g., atp8). Most of the tRNA genes exhibited a typical 'cloverleaf' secondary structure with few exceptions in the two studied species. In C. clypeatus, tRNA-Ser1 lacks the thymine pseudouracil cytosine (TΨC) loop while tRNA-Phe and tRNA-Tyr each exhibit a deletion of the dihydroxyuridine (DHU) loop but not the arm. In turn, in E. talpoida, tRNA-Phe and tRNA-Arg exhibit a deletion of the DHU loop but not the arm while tRNA-Ser1 lacks the TΨC arm. A phylogenomic analysis based on translated PCGs confirms the monophyly of the infraorder Anomura and retrieves most/all relationships at the superfamily and family level previously reported for anomurans. The analysis supports the monophyletic status of the families Albuneidae, Lithodidae, Coenobitidae, and Porcellanidae. In turn, the superfamily Paguroidea, and the families Paguridae and Diogenidae are polyphyletic.


Assuntos
Anomuros , Asteraceae , Genoma Mitocondrial , Humanos , Animais , Anomuros/genética , Genoma Mitocondrial/genética , Filogenia , Timina , RNA de Transferência/genética , Nucleotídeos , Citosina , Asteraceae/genética
8.
Zootaxa ; 5150(2): 189-216, 2022 Jun 07.
Artigo em Inglês | MEDLINE | ID: mdl-36095752

RESUMO

Historically, Lysmata vittata has been reported with a near global non-polar distribution. Early studies reported a wide morphological variation in this species, which served as a basis for further synonymization of at least four species. Herein, we investigated the species diversity within L. vittata complex and tested whether L. rauli and L. durbanensis are valid species instead of junior synonyms of L. vittata. Our integrated morphological and molecular data strongly supports the validity of at least six taxonomic entities within the broader L. vittata complex, including L. rauli and L. durbanensis and three undescribed species. Multivariate analyses highlighted prominent morphological differences in accessory branch structure of dorsolateral antennular flagellum, number of carpal and meral segments of the second pereopod, and color pattern which segregated shrimps into distinct morpho-groups. Phylogenetic analyses supported morphological groupings and recovered five widely divergent lineages, which corresponded to the morphological groupings: L. vittata sensu stricto; L. rauli sensu stricto; L. sp. CHINA; L. sp. AUS1; and L. sp. AUS2. Therefore, we formally resurrect L. rauli to valid species status and posit it is native to the subtropical and tropical Indo West-Pacific. Although data were limited, we also formally resurrect L. durbanensis to valid species status from southern Africa. Our results imply L. vittata and L. rauli are exotic species in the western Atlantic, New Zealand, and the Mediterranean. This study provides a solid framework to continue untangling the historic L. vittata species complex, which is likely to include additional species to the ones included in the present study.


Assuntos
Decápodes , Animais , Filogenia
9.
Gene ; 845: 146847, 2022 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-36058495

RESUMO

The roosterfish Nematistius pectoralis is considered as one of the most magnificent sportfishes worldwide. This study developed the first genomic resource for this trophy-fish that is heavily targeted by the fly-fishing industry. The complete mitochondrial genome of N. pectoralis was assembled using short read sequences and analyzed in detail. The mitochondrial genome of N. pectoralis is 16,537 bp in length and comprises 13 protein-coding genes (PCGs), 2 ribosomal RNA genes (12S and 16S), and 22 transfer RNA genes. A long intergenic space 770 bp in length was assumed to be the d-loop or Control Region (CR). Most of the PCGs and tRNA genes are encoded in the l-strand. All PCGs are under purifying selection and atp8 and nad6 experienced the least selective pressure. All tRNAs exhibit a cloverleaf secondary structure except tRNA-Serine 1 that lacked the d-arm loop. The d-loop of N. pectoralis exhibits three domains commonly described in other fishes; extended terminal associated sequences (ETAS), central, and conserved sequence block (CSB). A ML phylogenetic reconstruction of the newly recognized order Carangiformes based on all 13 mitochondrial PCGs did not support the monophyly of this clade but recognized several families as monophyletic, including Bothidae, Carangidae, Istiophoridae, Latidae, Paralichthyidae, Polynemidae, and Rhombosoleidae. Nematistius pectoralis was sister to a clade composed of Toxotes chatareus (fam. Toxotidae) + Lactarius lactarius (fam. Lactariidae). This genomic resource developed for N. pectoralis will aid in improving our understanding of the population genomics of and strengthen conservation and management strategies in this remarkable trophy-fish.


Assuntos
Genoma Mitocondrial , Animais , Peixes/genética , Genoma Mitocondrial/genética , Brânquias , Filogenia , RNA de Transferência/química , RNA de Transferência/genética , Serina
10.
Mol Biol Rep ; 49(2): 1141-1149, 2022 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-34783988

RESUMO

BACKGROUND: The 'Zacatuche', 'Teporingo', or Volcano rabbit (Romerolagus diazi) belongs to the family Leporidae, is an endemic species restricted to the Central part of the Trans-Mexican Volcanic Belt, and is considered 'endangered' by the IUCN Red List of Threatened Species. METHODS AND RESULTS: This study reports, for the first time, the complete mitochondrial genome of R. diazi and examined the phylogenetic position of R. diazi among other closely related co-familiar species using mitochondrial protein-coding genes (PCGs). The mitogenome of R. diazi was assembled from short Illumina 150 bp pair-end reads with a coverage of 189x. The AT-rich mitochondrial genome of R. diazi is 17,400 bp in length and is comprised of 13 PCGs, two ribosomal RNA genes, and 22 transfer RNA genes. The gene order observed in the mitochondrial genome of R. diazi is identical to that reported for other leporids. Phylogenetic analyses based on PCGs support the basal position of Romerolagus within the Leporidae, at least when compared to the genera Oryctolagus and Lepus. Nonetheless, additional mitochondrial genomes from species belonging to the genera Bunolagus, Sylvilagus, and Pronolagus, among others, are needed before a more robust conclusion about the derived vs basal placement of Romerolagus within the family Leporidae can be reached based on mitochondrial PCGs. CONCLUSIONS: This is the first genomic resource developed for R. diazi and it represents a tool to improve our understanding about the ecology and evolutionary biology of this iconic and endangered species.


Assuntos
Genoma Mitocondrial/genética , Lagomorpha/genética , Mitocôndrias/genética , Animais , Conservação dos Recursos Naturais/métodos , Espécies em Perigo de Extinção , Ordem dos Genes , México , Filogenia , RNA de Transferência/genética , Coelhos/genética
11.
Zootaxa ; 5039(4): 495-517, 2021 Sep 17.
Artigo em Inglês | MEDLINE | ID: mdl-34811066

RESUMO

Thor amboinensis (De Man, 1888), known as sexy shrimp or anemone squat shrimp and popular among divers and aquarists, was previously believed to have a worldwide distribution, with populations throughout the tropical parts of the Indo-Pacific and Atlantic Ocean. However, consistent differences in some details of the colour pattern strongly suggest that T. amboinensis does not represent a single species, but a pantropical species complex. A recent phylogeographic analysis of T. amboinensis based on molecular data confirmed that this taxon is composed of at least five putative cryptic or pseudocryptic species. In the present study, a new cryptic species, Thor dicaprio sp. nov., is established for the western Atlantic populations previously referred to as T. amboinensis. The new species can be distinguished from all other members of the T. amboinensis complex by two differences in the colour pattern and a subtle difference in the size and setation of the appendix masculina, the latter yet to be confirmed. The conspicuous red-white banding of the antennal flagella appears to be the most diagnostic feature of the new species. In addition, T. dicaprio sp. nov. forms a genetically distinctive, homogeneous, tropical western Atlantic (TWA) clade, with the COI pairwise genetic distances from other clades ranging from 8.8% to 19.2%. The distribution of T. dicaprio sp. nov. includes the entire Caribbean Sea, parts of the Gulf of Mexico, Florida, Bahamas, Bermuda, as well as some offshore localities off northern and eastern Brazil. The main aspects and biology and ecological variability of T. dicaprio sp. nov. are discussed in the light of phylogeographic data presently available for the T. amboinensis complex.


Assuntos
Decápodes , Distribuição Animal , Estruturas Animais , Animais , Decápodes/genética
12.
Gene ; 802: 145868, 2021 Nov 15.
Artigo em Inglês | MEDLINE | ID: mdl-34364911

RESUMO

The Honduran white bat, Ectophylla alba (Allen 1982), is one of eight species belonging to the family Phyllostomidae that exclusively roosts in tents. Due to its restricted distribution, habitat specificity, and diet requirements, E. alba has been strongly affected by habitat loss and fragmentation during the last decade. In this study, we developed the first genomic resource for this species; we assembled and analyzed in detail the complete mitochondrial genome of E. alba. The mitogenome of E. alba is 16,664 bp in length and is comprised of 13 protein coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes (tRNAs), and a putative Control Region (CR) 1,232 bp in length. Gene arrangement in the mitochondrial chromosome of E. alba is identical to that reported before in other species of co-familiar bats. All PCGs are under purifying selection, with atp8 experiencing the least selective pressure. In all PCGs, codons ending with adenine are preferred over others ending in thymine and cytosine. Except tRNA-Serine 1, all tRNAs exhibit a cloverleaf secondary structure. The CR of E. alba exhibits three domains commonly described in other mammals, including bats; extended terminal associated sequences (ETAS), central, and conserved sequence block (CSB). A ML phylogenetic reconstruction of the family Phyllostomidae based on all 13 mitochondrial PCGs confirms the monophyletic status of the subfamily Sternodermatinae and indicates the close relationship between E. alba and the genus Artibeus. This is the first genomic resource developed for E. alba and represents the first step to improving our understanding of the genomic underpinnings involved in the evolution of specialization as well as acclimatization and adaptation to local and global change of specialist bats.


Assuntos
Quirópteros/genética , Genoma Mitocondrial , Animais , Quirópteros/classificação , Uso do Códon , DNA Mitocondrial , Filogenia , Proteínas/genética , RNA de Transferência/genética
13.
PeerJ ; 6: e5561, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30202657

RESUMO

Lysmata arvoredensis sp. nov. inhabits temperate waters in the south coast of Brazil and is named in tribute to the Marine Protected Area REBIO Arvoredo. This is the fourth species belonging to the genus Lysmata recorded for the region and the ninth for Brazil. L. arvoredensis sp. nov. can be distinguished from other species of Lysmata by the presence of a nearly completely fused accessory branch with a single free unguiform segment on the outer antennular flagellum; a rostrum with seven dorsal (2+5) and three ventral teeth; a stylocerite with a pointed tip bearing mesial setae; a second pereiopod with 22-24 carpal subsegments and 14-16 subsegments in the merus; a merus of the third pereiopod with five ventrolateral and 12 ventral spines on the propodus; and its color pattern, with red bands and patches in pleonites 2-3 that resemble a mask in dorsal view. Molecular characters demonstrate that L. arvoredensis sp. nov. is most closely related to other species of Lysmata belonging to the Neotropical and Cleaner clades. To support future ecological studies in the region, identification keys to the species of Lysmata recorded in the southwestern Atlantic Ocean are provided.

14.
Zootaxa ; 4363(4): 576-582, 2017 Dec 12.
Artigo em Inglês | MEDLINE | ID: mdl-29245395

RESUMO

A new species of peppermint shrimp, Lysmata baueri n. sp., is described based on a single specimen from the eastern Gulf of Mexico. The new species can be distinguished from other morphologically similar species of Lysmata Risso, 1816 by the number of teeth, length and shape of the rostrum, the length of the antennular peduncle relative to the scaphocerite, the number of meral and ischial articles in the second pereiopods, and the number of spines on the flexor margin of the dactyli from the third to fifth pereiopods. Morphological characters demonstrate that L. baueri n. sp., is most closely related to the eastern Pacific L. californica (Stimpson, 1866), L. nayaritensis Wicksten, 2000 and L. porteri (Rathbun, 1907).


Assuntos
Decápodes , Distribuição Animal , Estruturas Animais , Animais , Golfo do México , México
15.
PeerJ ; 5: e3004, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28229028

RESUMO

Management of the few regulated ornamental fisheries relies on inadequate information about the life history of the target species. Herein, we investigated the reproductive biology of the most heavily traded marine invertebrate in the western Atlantic; the blue-legged hermit crab Clibanarius tricolor. We report on density, individual-level, and population-level reproductive parameters in 14 populations spanning the Florida Keys. In C. tricolor, abundance, population-level, and individual-level reproductive parameters exhibited substantial small-scale spatial variation in the Florida Keys. For instance, the proportion of brooding females varied between 10-94% across localities. In females, average (±SD) fecundity varied between 184 (±54) and 614 (±301) embryos crab-1 across populations. Fecundity usually increases with female body size in hermit crabs. However, we found no effect of female body size on fecundity in three of the populations. Altogether, our observations suggest that C. tricolor may fit a source-sink metapopulation dynamic in the Florida Keys with low reproductive intensity and absence of a parental body size-fecundity relationship resulting in net reproductive loses at some localities. We argue in favor of additional studies describing population dynamics and other aspects of the natural history of C. tricolor (e.g., development type, larval duration) to reveal 'source' populations, capable of exporting larvae to nearby populations. Our observations imply that future studies aimed at assessing standing stocks or describing other aspects of the life history of this hermit crab need to focus on multiple localities simultaneously. This and future studies on the reproductive biology of this species will form the baseline for models aimed at assessing the stock condition and sustainability of this heavily harvested crustacean.

16.
PLoS One ; 10(3): e0121120, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25799577

RESUMO

Theory predicts that monogamy is adaptive in symbiotic crustaceans inhabiting relatively small and morphologically simple hosts in tropical environments where predation risk away from hosts is high. We tested this prediction in the shrimp Odontonia katoi, which inhabits the atrial chamber of the ascidian Polycarpa aurata in the Coral Triangle. Preliminary observations in O. katoi indicated that males were smaller than females, which is suggestive of sex change (protandry) in some symbiotic organisms. Thus, we first investigated the sexual system of O. katoi to determine if this shrimp was sequentially hermaphroditic. Morphological identification and size frequency distributions indicated that the population comprised males that, on average, were smaller than females. Gonad dissections demonstrated the absence of transitional individuals. Thus, O. katoi is a gonochoric species with reverse sexual dimorphism. The population distribution of O. katoi in its ascidian host did not differ significantly from a random distribution and shrimps inhabiting the same host individual as pairs were found with a frequency similar to that expected by chance alone. This is in contrast to that reported for other socially monogamous crustaceans in which pairs of heterosexual conspecifics are found in host individuals more frequently than expected by chance alone. Thus, the available information argues against monogamy in O. katoi. Furthermore, that a high frequency of solitary females were found brooding embryos and that the sex ratio was skewed toward females suggests that males might be roaming among hosts in search of receptive females in O. katoi. Symbiotic crustaceans can be used as a model system to understand the adaptive value of sexual and mating systems in marine invertebrates.


Assuntos
Palaemonidae/fisiologia , Urocordados/parasitologia , Adaptação Biológica , Animais , Feminino , Masculino , Palaemonidae/anatomia & histologia , Caracteres Sexuais , Comportamento Sexual Animal , Simbiose , Urocordados/fisiologia
17.
Mol Phylogenet Evol ; 64(3): 401-15, 2012 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-22579811

RESUMO

The phylogenetic relationships of the alpheid shrimp genera Betaeus (Dana, 1852) (15 species) and Betaeopsis (Yaldwyn, 1971) (three species), collectively known as hooded shrimps, are analyzed with morphological, molecular (16S and H3) and combined "total evidence" (morphology+DNA) datasets. The tree topology resulting from morphological and combined analyses places Betaeus jucundus as sister to all the remaining species of Betaeus and Betaeopsis, rendering Betaeus paraphyletic. On the other hand, Betaeopsis is recovered as monophyletic. Betaeus australis is positioned as sister to the remaining species of Betaeus s. str. (excluding B. jucundus), which is composed of three well-supported and resolved clades. Mapping of biogeographic traits on the combined tree suggests at least two possible historic scenarios. In the first scenario, the North-East Pacific harboring the highest diversity of hooded shrimps (seven species of Betaeus), acted as the "center of origin", where species appeared, matured and eventually migrated toward peripheral regions. In the second scenario, Betaeus+Betaeopsis originated in the southern Indo-West Pacific and subsequently colonized the North-East Pacific, where a major radiation involving dispersal/vicariance events took place. The mapping of life history traits (symbiosis vs. free living and gregariousness vs. single/pair living) in the combined tree suggests (1) that different types of symbioses with dissimilar host organisms (sea urchins, abalones, other decapods, spoon worms) evolved independently more than once in the group (in B. jucundus and in various lineages of Betaeus s. str.), and (2) that gregariousness was ancestral in the Betaeus s. str. -Betaeopsis clade and later shifted toward single/pair living in several lineages.


Assuntos
Evolução Biológica , Decápodes/genética , Filogenia , Animais , Teorema de Bayes , Decápodes/anatomia & histologia , Decápodes/classificação , Funções Verossimilhança , Oceano Pacífico , Filogeografia , Alinhamento de Sequência , Análise de Sequência de DNA
18.
Biol Bull ; 219(2): 151-65, 2010 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-20972260

RESUMO

The sexual system of the symbiotic shrimp Thor amboinensis is described, along with observations on sex ratio and host-use pattern of different populations. We used a comprehensive approach to elucidate the previously unknown sexual system of this shrimp. Dissections, scanning electron microscopy, size-frequency distribution analysis, and laboratory observations demonstrated that T. amboinensis is a protandric hermaphrodite: shrimp first mature as males and change into females later in life. Thor amboinensis inhabited the large and structurally heterogeneous sea anemone Stichodactyla helianthus in large groups (up to 11 individuals) more frequently than expected by chance alone. Groups exhibited no particularly complex social structure and showed male-biased sex ratios more frequently than expected by chance alone. The adult sex ratio was male-biased in the four separate populations studied, one of them being thousands of kilometers apart from the others. This study supports predictions central to theories of resource monopolization and sex allocation. Dissections demonstrated that unusually large males were parasitized by an undescribed species of isopod (family Entoniscidae). Infestation rates were similarly low in both sexes (≈11%-12%). The available information suggests that T. amboinensis uses pure search promiscuity as a mating system. This hypothesis needs to be formally tested with mating behavior observations and field measurements on the movement pattern of both sexes of the species. Further detailed studies on the lifestyle and sexual system of all the species within this genus and the development of a molecular phylogeny are necessary to elucidate the evolutionary history of gender expression in the genus Thor.


Assuntos
Crustáceos/anatomia & histologia , Crustáceos/fisiologia , Organismos Hermafroditas/fisiologia , Animais , Tamanho Corporal , Dissecação , Genitália/anatomia & histologia , Microscopia Eletrônica de Varredura , Anêmonas-do-Mar/parasitologia , Razão de Masculinidade
19.
Bioresour Technol ; 101(3): 1028-35, 2010 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19819689

RESUMO

Increased Kraft pulp mill production generates increased solid wastes. In response, composting has emerged as an interesting alternative for disposal of these solid wastes. A central composite factor design was used to investigate the influence of incubation conditions (dregs addition and operation time) on chemical and biological parameters, determining the best in-vessel conditions in order to develop a correct composting design. Dregs helped reduce the pH drop that occurs at the beginning of the process. Biological activities presented high values during the active phase, followed by a decrease with stable final values along with N-NH(4)(+) and N-NO(3)(-) trend, which were indicative of mature compost. Dregs addition had not significant effect on the biological activities during composting of Kraft mill sludge. However, moderate amounts of dregs (between 5% and 8%) at operation time of 60-70 days would be the best compromise.


Assuntos
Resíduos Industriais/análise , Eliminação de Resíduos , Esgotos/análise , Solo/análise , Amônia/química , Dióxido de Carbono , Glucose/química , Concentração de Íons de Hidrogênio , Hidrólise , Modelos Teóricos , Óxido Nítrico/química , Nitrogênio/química , Temperatura , Fatores de Tempo , Urease/química
20.
Waste Manag Res ; 25(4): 319-26, 2007 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-17874658

RESUMO

Increasing pulp industry production has generated additional solid waste (i.e. biological sludge, dregs, etc.) and therefore an increasing disposal problem. On the other hand, composting is emerging as an interesting alternative for the disposal of residues. The objective of this study was to evaluate the physical and chemical properties of sludge, dregs and bark and the effect on their initial conditioning stage prior to composting, using pine chips as bulking agent. After their characterization, these solid wastes were combined in different mixture proportions defined by a 32 experimental design based on the response surface methodology (RSM), in which 18 observations were required for the independent variables (dregs and bark) and the C: N ratio, moisture content and pH were the dependent variables. The characterization indicated that the dregs have alkaline properties with the presence of some essential plant nutrients, such as phosphorous (0.37%), potassium (0.76%), magnesium (1.4%) and calcium (27%). The combination of the macronutrients (phosphorous: 0.39%, potassium: 0.24%, calcium: 1.7%, magnesium: 0.44%) and micronutrients such as ferrous material (0.47%) and zinc (0.12%) found in the sludge suggest a promising alternative despite the potential problem due to the high pH of the dregs. The RSM design indicated a feasible region that satisfied the optimal dregs: bark ratio of 0.25 without exceeding the addition of 12.5% dregs, due to the alkaline properties of these inorganic wastes and the quadratic influence over the C:N ratio. The experimental results indicated that the composting process of dregs, bark and sludge is technically suitable, although the use of a rapidly available C source needs to be evaluated.


Assuntos
Biodegradação Ambiental , Resíduos Industriais/prevenção & controle , Modelos Teóricos , Eliminação de Resíduos/métodos , Casca de Planta , Eliminação de Resíduos/normas , Esgotos
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