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1.
Theor Appl Genet ; 137(10): 218, 2024 Sep 10.
Artículo en Inglés | MEDLINE | ID: mdl-39254853

RESUMEN

KEY MESSAGE: Soybean seed oil and meal composition traits can be combined without interference to provide additional value to the crop. Soybean [Glycine max (L.) Merr.] is an important crop worldwide; its overall value comes from seed oil and high protein meal. The development of soybean varieties with allele combinations for improved oil and meal quality is expected to provide a compositional value bundle for soybean. The high oleic and low linolenic acid seed oil trait (HOLL; > 70% oleic and < 3% linolenic acid) is targeted to optimize the health and functional properties of soybean oil. For soybean meal, metabolizable energy is improved by altering the carbohydrate profile with increased sucrose and decreased anti-nutritional factors, raffinose family of oligosaccharides (RFOs). Previous research identified four variant alleles of fatty acid desaturase (FAD) genes and two raffinose synthase (RS) genes necessary for the HOLL trait in soybean oil and Low or Ultra-Low (UL) RFO traits in soybean meal, respectively. We employed a molecular marker-assisted breeding approach to combine six alleles conferring the desired soybean oil and meal value traits. Eight environment field trials were conducted with twenty-four soybean lines to evaluate phenotypic interactions among the variant alleles of FAD and RS genes. The results indicated that the four FAD gene alleles conditioned the HOLL fatty acid profile of the seed oil regardless of the allele status of the RS genes. Independent of the allele combination of the FAD genes, soybean with two variant alleles of the RS genes had the desired RFO trait in the seeds. The results confirm the feasibility of soybean variety development with this unique combination of oil and meal traits.


Asunto(s)
Alelos , Glycine max , Fenotipo , Fitomejoramiento , Semillas , Aceite de Soja , Glycine max/genética , Semillas/genética , Semillas/química , Semillas/crecimiento & desarrollo , Galactosiltransferasas/genética , Galactosiltransferasas/metabolismo , Ácido Graso Desaturasas/genética , Ácido Graso Desaturasas/metabolismo
2.
Mol Biol Rep ; 51(1): 961, 2024 Sep 05.
Artículo en Inglés | MEDLINE | ID: mdl-39235637

RESUMEN

The high cost of producing conventional hybrid cotton seeds led to more research efforts on cotton male sterility systems. There is a lack of studies on cytology, histology, morphological variation, yield, and altered restorer backgrounds to identify and develop male sterility markers in cotton hybrids. Hybrid cotton can be efficiently produced by exploiting genetic male sterility. Among the 19 Genetic Male Sterility (GMS) genes discovered, the lines with ms5ms6 genes are mostly utilised to establish successful hybrid cotton in India. Molecular markers closely associated with the MS alleles are identified to facilitate the efficient and rapid backcrossing of male-sterility genes into elite lines or cultivars by marker-assisted backcrossing. The majority of the markers which are random DNA markers (RDMs), are probably lost, when recombination occurs. In contradiction, molecular markers (functional markers, or FMs) within the genic region can be identified and employed in crops for diverse traits, if prospective characteristic genes are known. In this review, the mechanism of male sterility, its gene expression level, and the need for functional markers for the male sterility trait in cotton have been put forward.


Asunto(s)
Gossypium , Infertilidad Vegetal , Gossypium/genética , Gossypium/fisiología , Infertilidad Vegetal/genética , Marcadores Genéticos , Genes de Plantas/genética , Fitomejoramiento/métodos , Semillas/genética , Regulación de la Expresión Génica de las Plantas/genética , Alelos , Hibridación Genética/genética
3.
Sci Rep ; 14(1): 20815, 2024 09 06.
Artículo en Inglés | MEDLINE | ID: mdl-39242626

RESUMEN

The interaction between genotype and environment (GEI) significantly influences plant performance, crucial for breeding programs and ultimately boosting crop productivity. Alongside GEI, breeders encounter another hurdle in their quest for yield improvement, notably adverse and negative correlations among pivotal traits. This study delved into the stability of white sugar yield (WSY), root yield (RY), sugar content (SC), extraction coefficient of sugar (ECS), and the interplay among essential traits including RY, SC, alpha amino nitrogen (N), sodium (Na+), and potassium (K+) across 15 sugar beet hybrids and three control varieties. The investigation spanned two locations over two consecutive years (2022-2023), employing a randomized complete block design with four replications to comprehensively analyze these factors. The analysis of variance highlighted the significant effects of environment, genotype, and GEI at the 1% probability level. Notably, the AMMI analysis of GEI revealed the significance of the first component for WSY, RY, and SC, with the first two components proving significant for ECS. Within the linear mixed model (LMM), WSY, RY, SC, and ECS demonstrated significant effects from both genotype and GEI. In the WAASB biplot, genotypes 10, 8, 17, 6, 13, 14, 15, 7, 12, and 16 exhibited stability in WSY, while genotypes 9, 10, 6, 14, 7, 8, 13, 12, 18, and 15 displayed stability in RY. Additionally, genotypes 10, 15, 12, 13, 16, 17, 6, and 14 were stable for SC, and genotypes 8, 10, 7, 6, 13, 12, 16, 17, 15, 14, and 18 showcased stability in ECS, boasting above-average yield values. In the genotype by yield × trait (GYT) biplot, genotypes 15, 18, and 16 emerged as top performers when combining RY with SC, Na+, N, and K+, suggesting their potential for inclusion in breeding programs.


Asunto(s)
Beta vulgaris , Genotipo , Fitomejoramiento , Beta vulgaris/genética , Beta vulgaris/crecimiento & desarrollo , Beta vulgaris/metabolismo , Fitomejoramiento/métodos , Interacción Gen-Ambiente , Fenotipo , Raíces de Plantas/genética , Raíces de Plantas/crecimiento & desarrollo , Raíces de Plantas/metabolismo , Potasio/metabolismo , Carácter Cuantitativo Heredable , Azúcares/metabolismo , Nitrógeno/metabolismo
4.
BMC Plant Biol ; 24(1): 822, 2024 Sep 02.
Artículo en Inglés | MEDLINE | ID: mdl-39218879

RESUMEN

BACKROUND: In recent years, with the increasing demand for seedless grape varieties that have lower production costs, are disease resistant/tolerant and require less chemical pesticides, the embryo recovery technique has begun to be used more in table grape breeding studies. However, the desired high success rate has not yet been achieved in these studies. Although there are different reasons for this, especially the grape varieties selected for cross-breeding and the timing of transferring the embryos to medium are among the most important reasons. In this study, focusing on these two important factors, the embryos obtained from different hybridization combinations were transferred to agar medium at different weeks for 4 years and the most successful combination and time were determined. In addition, seedless and large berry grape varieties and some seeded varieties that are resistant/tolerant to fungal diseases were selected as parents because they can provide resistance to disease infections in vitro and thus increase the success rate. RESULTS: The results obtained from the study showed that the selected variety and combination significantly affected the success rate in embryo rescue. Especially in combinations with the 'Yalova Seedless' variety as the female parent, more successful results were obtained compared to combinations of other varieties. When 'Yalova Seedless' variety was pollinated with pollen of 'Red Globe', 'Muscat Bailey A' and 'Exalta' varieties, more seedlings were obtained with the help of embryo rescue. The results obtained over four years showed that the best sampling time after pollination was the eighth week and then the seventh week. CONCLUSIONS: According to the results obtained, it has been shown that the selected varieties and the sampling time significantly affect the success rate in embryo rescue studies. Therefore, higher success rates can be achieved in comprehensive breeding studies in which they will be included as pollinators, especially in different seeded varieties that are resistant to diseases and have larger berry size.


Asunto(s)
Semillas , Vitis , Vitis/genética , Vitis/fisiología , Semillas/crecimiento & desarrollo , Semillas/fisiología , Fitomejoramiento/métodos , Enfermedades de las Plantas/microbiología , Resistencia a la Enfermedad , Plantones/crecimiento & desarrollo , Plantones/genética , Polinización
5.
Planta ; 260(4): 85, 2024 Sep 04.
Artículo en Inglés | MEDLINE | ID: mdl-39227398

RESUMEN

MAIN CONCLUSION: Biofortification of legumes using diverse techniques such as plant breeding, agronomic practices, genetic modification, and nano-technological approaches presents a sustainable strategy to address micronutrient deficiencies of underprivileged populations. The widespread issue of chronic malnutrition, commonly referred to as "hidden hunger," arises from the consumption of poor-quality food, leading to various health and cognitive impairments. Biofortified food crops have been a sustainable solution to address micronutrient deficiencies. This review highlights multiple biofortification techniques, such as plant breeding, agronomic practices, genetic modification, and nano-technological approaches, aimed at enhancing the nutrient content of commonly consumed crops. Emphasizing the biofortification of legumes, this review employs bibliometric analysis to examine research trends from 2000 to 2023. It identifies key authors, influential journals, contributing countries, publication trends, and prevalent keywords in this field. The review highlights the progress in developing biofortified crops and their potential to improve global nutrition and help underprivileged populations.


Asunto(s)
Bibliometría , Biofortificación , Productos Agrícolas , Fabaceae , Desnutrición , Biofortificación/métodos , Fabaceae/metabolismo , Productos Agrícolas/metabolismo , Fitomejoramiento/métodos , Humanos , Alimentos Fortificados , Micronutrientes/análisis
6.
Funct Integr Genomics ; 24(5): 153, 2024 Sep 03.
Artículo en Inglés | MEDLINE | ID: mdl-39223394

RESUMEN

Soybean Glycine max L., paleopolyploid genome, poses challenges to its genetic improvement. However, the development of reference genome assemblies and genome sequencing has completely changed the field of soybean genomics, allowing for more accurate and successful breeding techniques as well as research. During the single-cell revolution, one of the most advanced sequencing tools for examining the transcriptome landscape is single-cell RNA sequencing (scRNA-seq). Comprehensive resources for genetic improvement of soybeans may be found in the SoyBase and other genomics databases. CRISPR-Cas9 genome editing technology provides promising prospects for precise genetic modifications in soybean. This method has enhanced several soybean traits, including as yield, nutritional value, and resistance to both biotic and abiotic stresses. With base editing techniques that allow for precise DNA modifications, the use of CRISPR-Cas9 is further increased. With the availability of the reference genome for soybeans and the following assembly of wild and cultivated soybeans, significant chromosomal rearrangements and gene duplication events have been identified, offering new perspectives on the complex genomic structure of soybeans. Furthermore, major single nucleotide polymorphisms (SNPs) linked to stachyose and sucrose content have been found through genome-wide association studies (GWAS), providing important tools for enhancing soybean carbohydrate profiles. In order to open up new avenues for soybean genetic improvement, future research approaches include investigating transcriptional divergence processes, enhancing genetic resources, and incorporating CRISPR-Cas9 technologies.


Asunto(s)
Sistemas CRISPR-Cas , Edición Génica , Genoma de Planta , Glycine max , Glycine max/genética , Edición Génica/métodos , Genómica/métodos , Fitomejoramiento/métodos , Polimorfismo de Nucleótido Simple , Estudio de Asociación del Genoma Completo
7.
Mol Biol Rep ; 51(1): 958, 2024 Sep 04.
Artículo en Inglés | MEDLINE | ID: mdl-39230778

RESUMEN

Sheath blight, caused by the fungus Rhizoctonia solani, is a major problem that significantly impacts rice production and can lead to substantial yield losses. The disease has become increasingly problematic in recent years due to the widespread use of high-yielding semi-dwarf rice cultivars, dense planting, and heavy application of nitrogenous fertilizers. The disease has become more challenging to manage due to its diverse host range and the lack of resistant cultivars. Despite utilizing traditional methods, the problem persists without a satisfactory solution. Therefore, modern approaches, including advanced breeding, transgenic methods, genome editing using CRISPR/Cas9 technology, and nanotechnological interventions, are being explored to develop rice plants resistant to sheath blight disease. This review primarily focuses on these recent advancements in combating the sheath blight disease.


Asunto(s)
Biotecnología , Sistemas CRISPR-Cas , Resistencia a la Enfermedad , Edición Génica , Oryza , Fitomejoramiento , Enfermedades de las Plantas , Rhizoctonia , Oryza/genética , Oryza/microbiología , Enfermedades de las Plantas/microbiología , Enfermedades de las Plantas/genética , Resistencia a la Enfermedad/genética , Rhizoctonia/patogenicidad , Fitomejoramiento/métodos , Edición Génica/métodos , Sistemas CRISPR-Cas/genética , Biotecnología/métodos , Plantas Modificadas Genéticamente/genética , Nanotecnología/métodos
8.
Theor Appl Genet ; 137(10): 224, 2024 Sep 16.
Artículo en Inglés | MEDLINE | ID: mdl-39283360

RESUMEN

KEY MESSAGE: Single nucleotide polymorphism (SNP) markers in wheat and their prospects in breeding with special reference to rust resistance. Single nucleotide polymorphism (SNP)-based markers are increasingly gaining momentum for screening and utilizing vital agronomic traits in wheat. To date, more than 260 million SNPs have been detected in modern cultivars and landraces of wheat. This rapid SNP discovery was made possible through the release of near-complete reference and pan-genome assemblies of wheat and its wild relatives, coupled with whole genome sequencing (WGS) of thousands of wheat accessions. Further, genotyping customized SNP sites were facilitated by a series of arrays (9 to 820Ks), a cost effective substitute WGS. Lately, germplasm-specific SNP arrays have been introduced to characterize novel traits and detect closely linked SNPs for marker-assisted breeding. Subsequently, the kompetitive allele-specific PCR (KASP) assay was introduced for rapid and large-scale screening of specific SNP markers. Moreover, with the advances and reduction in sequencing costs, ample opportunities arise for generating SNPs artificially through mutations and in combination with next-generation sequencing and comparative genomic analyses. In this review, we provide historical developments and prospects of SNP markers in wheat breeding with special reference to rust resistance where over 50 genetic loci have been characterized through SNP markers. Rust resistance is one of the most essential traits for wheat breeding as new strains of the Puccinia fungus, responsible for rust diseases, evolve frequently and globally.


Asunto(s)
Basidiomycota , Resistencia a la Enfermedad , Fitomejoramiento , Enfermedades de las Plantas , Polimorfismo de Nucleótido Simple , Triticum , Triticum/genética , Triticum/microbiología , Resistencia a la Enfermedad/genética , Enfermedades de las Plantas/microbiología , Enfermedades de las Plantas/genética , Fitomejoramiento/métodos , Basidiomycota/patogenicidad , Marcadores Genéticos , Técnicas de Genotipaje/métodos , Genotipo , Genoma de Planta
9.
Theor Appl Genet ; 137(10): 220, 2024 Sep 11.
Artículo en Inglés | MEDLINE | ID: mdl-39259361

RESUMEN

KEY MESSAGE: We identified novel physiological and genetic responses to phosphorus starvation in sorghum diversity lines that augment current knowledge of breeding for climate-smart crops in Europe. Phosphorus (P) deficiency and finite P reserves for fertilizer production pose a threat to future global crop production. Understanding root system architecture (RSA) plasticity is central to breeding for P-efficient crops. Sorghum is regarded as a P-efficient and climate-smart crop with strong adaptability to different climatic regions of the world. Here we investigated early genetic responses of sorghum RSA to P deficiency in order to identified genotypes with interesting root phenotypes and responses under low P. A diverse set of sorghum lines (n = 285) was genotyped using DarTSeq generating 12,472 quality genome wide single-nucleotide polymorphisms. Root phenotyping was conducted in a paper-based hydroponic rhizotron system under controlled greenhouse conditions with low and optimal P nutrition, using 16 RSA traits to describe genetic and phenotypic variability at two time points. Genotypic and phenotypic P-response variations were observed for multiple root traits at 21 and 42 days after germination with high broad sense heritability (0.38-0.76). The classification of traits revealed four distinct sorghum RSA types, with genotypes clustering separately under both low and optimal P conditions, suggesting genetic control of root responses to P availability. Association studies identified quantitative trait loci in chromosomes Sb02, Sb03, Sb04, Sb06 and Sb09 linked with genes potentially involved in P transport and stress responses. The genetic dissection of key factors underlying RSA responses to P deficiency could enable early identification of P-efficient sorghum genotypes. Genotypes with interesting RSA traits for low P environments will be incorporated into current sorghum breeding programs for later growth stages and field-based evaluations.


Asunto(s)
Genotipo , Fenotipo , Fósforo , Raíces de Plantas , Polimorfismo de Nucleótido Simple , Sorghum , Sorghum/genética , Sorghum/crecimiento & desarrollo , Sorghum/fisiología , Fósforo/metabolismo , Fósforo/deficiencia , Raíces de Plantas/crecimiento & desarrollo , Raíces de Plantas/genética , Fitomejoramiento , Sitios de Carácter Cuantitativo
10.
Theor Appl Genet ; 137(10): 223, 2024 Sep 15.
Artículo en Inglés | MEDLINE | ID: mdl-39278978

RESUMEN

KEY MESSAGE: Mutations in TaCHLI impact chlorophyll levels and yield-related traits in wheat. Natural variations in TaCHLI-7A/B influence plant productivity, offering potential for molecular breeding. Chlorophyll is essential for plant growth and productivity. The CHLI subunit of the magnesium chelatase protein plays a key role inserting magnesium into protoporphyrin IX during chlorophyll biosynthesis. Here, we identify a novel wheat mutant chlorophyll (chl) that exhibits yellow-green leaves, reduced chlorophyll levels, and increased carotenoid content, leading to an overall decline in yield-related traits. Map-based cloning reveals that the chl phenotype is caused by a point mutation (Asp186Asn) in the TaCHLI-7D gene, which encodes subunit I of magnesium chelatase. Furthermore, the three TaCHLI mutants: chl-7b-1 (Pro82Ser), chl-7b-2 (Ala291Thr), and chl-7d-1 (Gly357Glu), also showed significant reductions in chlorophyll content and yield-related traits. However, TaCHLI-7D overexpression in rice significantly decreased thousand kernel weight, yield per plant, and germination. Additionally, natural variations in TaCHLI-7A/B are significantly associated with flag leaf, spike exsertion length, and yield per plant. Notably, the favorable haplotype, TaCHLI-7B-HapII, which displayed higher thousand kernel weight and yield per plant, is positively selected in wheat breeding. Our study provides insights on the regulatory molecular mechanisms underpinning leaf color and chlorophyll biosynthesis, and highlights TaCHLI functions, which provide useful molecular markers and genetic resources for wheat breeding.


Asunto(s)
Clorofila , Liasas , Mutación Missense , Fenotipo , Hojas de la Planta , Triticum , Triticum/genética , Triticum/crecimiento & desarrollo , Clorofila/metabolismo , Hojas de la Planta/crecimiento & desarrollo , Hojas de la Planta/genética , Liasas/genética , Liasas/metabolismo , Metanosulfonato de Etilo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Oryza/genética , Oryza/crecimiento & desarrollo , Mapeo Cromosómico , Pigmentación/genética , Carotenoides/metabolismo , Clonación Molecular , Fitomejoramiento
11.
Int J Mol Sci ; 25(17)2024 Sep 05.
Artículo en Inglés | MEDLINE | ID: mdl-39273586

RESUMEN

A narrow genetic basis limits further the improvement of modern Gossypium hirsutum cultivar. The abundant genetic diversity of wild species provides available resources to solve this dilemma. In the present study, a chromosome segment substitution line (CSSL) population including 553 individuals was established using G. darwinii accession 5-7 as the donor parent and G. hirsutum cultivar CCRI35 as the recipient parent. After constructing a high-density genetic map with the BC1 population, the genotype and phenotype of the CSSL population were investigated. A total of 235 QTLs, including 104 QTLs for fiber-related traits and 132 QTLs for seed-related traits, were identified from four environments. Among these QTLs, twenty-seven QTLs were identified in two or more environments, and twenty-five QTL clusters consisted of 114 QTLs. Moreover, we identified three candidate genes for three stable QTLs, including GH_A01G1096 (ARF5) and GH_A10G0141 (PDF2) for lint percentage, and GH_D01G0047 (KCS4) for seed index or oil content. These results pave way for understanding the molecular regulatory mechanism of fiber and seed development and would provide valuable information for marker-assisted genetic improvement in cotton.


Asunto(s)
Mapeo Cromosómico , Cromosomas de las Plantas , Fibra de Algodón , Gossypium , Fenotipo , Sitios de Carácter Cuantitativo , Semillas , Gossypium/genética , Semillas/genética , Mapeo Cromosómico/métodos , Cromosomas de las Plantas/genética , Fitomejoramiento/métodos , Genotipo
12.
PLoS One ; 19(9): e0306083, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39264875

RESUMEN

This study evaluated the foliar antioxidant activity in nine Hevea brasiliensis genotypes from the ECC-1 (Élite Caquetá Colombia) selection and IAN 873 cultivar (control) in trees in the growth stage in two large-scale clonal trials in response to different climatic (semi-humid warm and humid warm sites) and seasonal (dry and rainy periods) conditions in the Colombian Amazon. The results indicated that Reactive Oxygen Species (ROS) production increased under conditions of lower water availability (dry period), leading to lipid peroxidation, high defense of photosynthetic pigments, and development of better osmotic adjustment capacity in the ECC 64, IAN 873, ECC 90, and ECC 35 genotypes due to high concentrations of carotenoids (0.40 mg g-1), reducing sugars (65.83 µg mg-1), and malondialdehyde (MDA) (2.44 nmol ml-1). In contrast, during the rainy period, a post-stress action was observed due to high contents of proline and total sugars (39.43 µg g-1 and 173.03 µg g-1, respectively). At the site level, with high Photosynthetically Active Radiation (PAR) values (1143 moles photons m-2 s-1), temperature (32.11°C), and lower precipitation (135 mm), higher antioxidant activity (chlorophylls a, b and total, carotenoids, and proline) was recorded at the humid warm site, demonstrating that the ECC 90, ECC 64, and ECC 66 genotypes are tolerant to water deficit compared to IAN 873. The ECC 64 genotype, independent of seasonal changes and site conditions, presented the highest contents in Chl a, total Chl, reducing sugars, total sugars, and MDA, showing a tendency to adapt to fluctuating conditions. This study showed that water fluctuations do not cause the same metabolic responses, these vary within the same species, depending on their developmental stage and the climatic and seasonal variations characteristic of the Colombian Amazon.


Asunto(s)
Antioxidantes , Genotipo , Hevea , Hojas de la Planta , Agua , Antioxidantes/metabolismo , Colombia , Hojas de la Planta/genética , Hojas de la Planta/metabolismo , Agua/metabolismo , Hevea/genética , Hevea/metabolismo , Fotosíntesis/genética , Fitomejoramiento/métodos , Carotenoides/metabolismo , Especies Reactivas de Oxígeno/metabolismo , Malondialdehído/metabolismo , Peroxidación de Lípido , Estaciones del Año
13.
BMC Plant Biol ; 24(1): 858, 2024 Sep 13.
Artículo en Inglés | MEDLINE | ID: mdl-39266956

RESUMEN

BACKGROUND: African mahogany species (Khaya sp.) have been introduced to Brazil gaining increasing economic interest over the last years, as they produce high quality wood for industrial applications. To this date, however, the knowledge available on the genetic basis of African mahogany plantations in Brazil is limited, which has driven this study to examine the extent of genetic diversity and structure of three cultivated species (Khaya grandifoliola, Khaya senegalensis and Khaya ivorensis) and their prospects for forest breeding. RESULTS: In total, 115 individuals were genotyped (48 of K. grandifoliola, 34 of K. senegalensis and 33 of K. ivorensis) for 3,330 filtered neutral loci obtained from genotyping-by-sequencing for the three species. The number of SNPs varied from 2,951 in K. ivorensis to 4,754 in K. senegalensis. Multiloci clustering, principal component analysis, Bayesian structure and network analyses showed a clear genetic separation among the three species. Structure analysis also showed internal structure within each species, highlighting genetic subgroups that could be sampled for selecting distinct genotypes for further breeding, although the genetic distances are moderate to low. CONCLUSION: In our study, SNP markers efficiently assessed the genomic diversity of African mahogany forest plantations in Brazil. Our genetic data clearly separated the three Khaya species. Moreover, pairwise estimates of genetic distances among individuals within each species showed considerable genetic divergence among individuals. By genotyping 115 pre-selected individuals with desirable growth traits, allowed us not only to recommend superior genotypes but also to identify genetically distinct individuals for use in breeding crosses.


Asunto(s)
Bosques , Variación Genética , Brasil , Meliaceae/genética , Polimorfismo de Nucleótido Simple , Fitomejoramiento , Genotipo , Genoma de Planta
14.
Theor Appl Genet ; 137(9): 214, 2024 Sep 03.
Artículo en Inglés | MEDLINE | ID: mdl-39223330

RESUMEN

KEY MESSAGE: A GWAS in an elite diversity panel, evaluated across 10 environments, identified genomic regions regulating six fiber quality traits, facilitating genomics-assisted breeding and gene discovery in upland cotton. In this study, an elite diversity panel of 348 upland cotton accessions was evaluated in 10 environments across the US Cotton Belt and genotyped with the cottonSNP63K array, for a genome-wide association study of six fiber quality traits. All fiber quality traits, upper half mean length (UHML: mm), fiber strength (FS: g tex-1), fiber uniformity (FU: %), fiber elongation (FE: %), micronaire (MIC) and short fiber content (SFC: %), showed high broad-sense heritability (> 60%). All traits except FE showed high genomic heritability. UHML, FS and FU were all positively correlated with each other and negatively correlated with FE, MIC and SFC. GWAS of these six traits identified 380 significant marker-trait associations (MTAs) including 143 MTAs on 30 genomic regions. These 30 genomic regions included MTAs identified in at least three environments, and 23 of them were novel associations. Phenotypic variation explained for the MTAs in these 30 genomic regions ranged from 6.68 to 11.42%. Most of the fiber quality-associated genomic regions were mapped in the D-subgenome. Further, this study confirmed the pleiotropic region on chromosome D11 (UHML, FS and FU) and identified novel co-localized regions on D04 (FU, SFC), D05 (UHML, FU, and D06 UHML, FU). Marker haplotype analysis identified superior combinations of fiber quality-associated genomic regions with high trait values (UHML = 32.34 mm; FS = 32.73 g tex-1; FE = 6.75%). Genomic analyses of traits, haplotype combinations and candidate gene information described in the current study could help leverage genetic diversity for targeted genetic improvement and gene discovery for fiber quality traits in cotton.


Asunto(s)
Fibra de Algodón , Genotipo , Gossypium , Fenotipo , Sitios de Carácter Cuantitativo , Gossypium/genética , Gossypium/crecimiento & desarrollo , Fibra de Algodón/análisis , Polimorfismo de Nucleótido Simple , Estudio de Asociación del Genoma Completo , Estudios de Asociación Genética , Desequilibrio de Ligamiento , Mapeo Cromosómico/métodos , Genoma de Planta , Fitomejoramiento
15.
Theor Appl Genet ; 137(10): 219, 2024 Sep 10.
Artículo en Inglés | MEDLINE | ID: mdl-39254868

RESUMEN

In the past century, there have been great achievements in identifying resistance (R) genes and quantitative trait loci (QTLs) as well as revealing the corresponding molecular mechanisms for resistance in rice to major diseases and insect pests. The introgression of R genes to develop resistant rice cultivars has become the most effective and eco-friendly method to control pathogens/insects at present. However, little attention has been paid to durable and broad-spectrum resistance, which determines the real applicability of R genes. Here, we summarize all the R genes and QTLs conferring durable and broad-spectrum resistance in rice to fungal blast, bacterial leaf blight (BLB), and the brown planthopper (BPH) in molecular breeding. We discuss the molecular mechanisms and feasible methods of improving durable and broad-spectrum resistance to blast, BLB, and BPH. We will particularly focus on pyramiding multiple R genes or QTLs as the most useful method to improve durability and broaden the disease/insect spectrum in practical breeding regardless of its uncertainty. We believe that this review provides useful information for scientists and breeders in rice breeding for multiple stress resistance in the future.


Asunto(s)
Resistencia a la Enfermedad , Oryza , Fitomejoramiento , Enfermedades de las Plantas , Sitios de Carácter Cuantitativo , Oryza/genética , Oryza/parasitología , Oryza/microbiología , Resistencia a la Enfermedad/genética , Enfermedades de las Plantas/genética , Enfermedades de las Plantas/microbiología , Enfermedades de las Plantas/parasitología , Enfermedades de las Plantas/inmunología , Animales , Hemípteros/genética , Hemípteros/fisiología , Insectos , Genes de Plantas
17.
PeerJ ; 12: e17993, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39247544

RESUMEN

This study aimed to enrich the Pelargonium gene pool through crosses and assess genetic variation among 56 genotypes from five Pelargonium species. Seventeen morphological descriptors were used, and NTSYS-pc software was employed to define genetic relationships, and a UPGMA-generated dendrogram reflected these relationships. Moreover, principal component analysis (PCA) was performed to determine which parameter was more effective in explaining variation. Results showed wide variation in genetic similarity rates, with the most similar genotypes being P. zonale 'c1' and a hybrid of P. zonale 'c1' x P. zonale 'c2' (90% similarity). According to the dendrogram results, it was observed that the genotypes were distributed in six clusters. In contrast, the most distant genotypes were P. zonale 'c11' and a hybrid of P. zonale 'c10' x P. zonale 'c11' (0.04% similarity). Hybrids from the female parent P. x hortorum 'c1' exhibited unique placement in the dendrogram. In the crossing combinations with this genotype, the individuals obtained in terms of flower type, flower color, flower size, bud size, early flowering, and leaf size characters showed different characteristics from the parents. Surprising outcomes in flower types, colors, and shapes contributed to gene pool enrichment, promising increased breeding variation success. The study holds practical implications for commercial breeding and serves as a valuable guide for future research endeavors.


Asunto(s)
Variación Genética , Genotipo , Pelargonium , Fitomejoramiento , Pelargonium/genética , Variación Genética/genética , Fitomejoramiento/métodos , Pool de Genes , Hibridación Genética , Flores/genética , Flores/anatomía & histología
18.
Plant Mol Biol ; 114(5): 97, 2024 Sep 09.
Artículo en Inglés | MEDLINE | ID: mdl-39249621

RESUMEN

Salinity is one of the major environmental factor that can greatly impact the growth, development, and productivity of barley. Our study aims to detect the natural phenotypic variation of morphological and physiological traits under both salinity and potassium nanoparticles (n-K) treatment. In addition to understanding the genetic basis of salt tolerance in barley is a critical aspect of plant breeding for stress resilience. Therefore, a foliar application of n-K was applied at the vegetative stage for 138 barley accessions to enhance salt stress resilience. Interestingly, barley accessions showed high significant increment under n-K treatment compared to saline soil. Based on genome-wide association studies (GWAS) analysis, causative alleles /reliable genomic regions were discovered underlying improved salt resilience through the application of potassium nanoparticles. On chromosome 2H, a highly significant QTN marker (A:C) was located at position 36,665,559 bp which is associated with APX, AsA, GSH, GS, WGS, and TKW under n-K treatment. Inside this region, our candidate gene is HORVU.MOREX.r3.2HG0111480 that annotated as NAC domain protein. Allelic variation detected that the accessions carrying C allele showed higher antioxidants (APX, AsA, and GSH) and barley yield traits (GS, WGS, and TKW) than the accessions carrying A allele, suggesting a positive selection of the accessions carrying C allele that could be used to develop barley varieties with improved salt stress resilience.


Asunto(s)
Antioxidantes , Estudio de Asociación del Genoma Completo , Hordeum , Potasio , Hordeum/genética , Hordeum/efectos de los fármacos , Hordeum/fisiología , Potasio/metabolismo , Antioxidantes/metabolismo , Tolerancia a la Sal/genética , Sitios de Carácter Cuantitativo , Estrés Salino/genética , Fenotipo , Nanopartículas , Fitomejoramiento , Alelos , Salinidad , Polimorfismo de Nucleótido Simple
19.
Mol Biol Rep ; 51(1): 981, 2024 Sep 13.
Artículo en Inglés | MEDLINE | ID: mdl-39269576

RESUMEN

Papaya ringspot virus (PRSV) is a catastrophic disease that causes huge yield losses in papaya cultivation around the world. Yield losses in severely infected plants can be upto 100%. Because of this disease, papaya cultivation has been shifted to other crops in some areas of the world. Many conventional methods and breeding approaches are used against this disease, which turns out to be less effective. Considering the yield loss caused by PRSV in papaya, it is high time to focus on alternative control methods. To implement effective management strategies, molecular approaches such as Marker Assisted Breeding (MAS) or transgenic methods involving post-transcriptional gene silencing targeting the genome viz., coat protein, replicase gene, or HC Pro can be pursued. However, the public's reluctance to widely accept the transgenic approach due to health and environmental concerns necessitates a consideration of non-transgenic alternatives. Prioritizing safety and ensuring efficient virus control, non-transgenic approaches which encompass cross-protection, genome editing, and topical applications of dsRNA to induce gene silencing within the host, can be adopted. This review aims to provide comprehensive insights of various molecular tools used in managing PRSV which in turn will help in sustainable agriculture.


Asunto(s)
Carica , Enfermedades de las Plantas , Potyvirus , Carica/virología , Carica/genética , Enfermedades de las Plantas/virología , Enfermedades de las Plantas/genética , Potyvirus/genética , Potyvirus/patogenicidad , Plantas Modificadas Genéticamente/genética , Fitomejoramiento/métodos , Resistencia a la Enfermedad/genética , Edición Génica/métodos , Proteínas de la Cápside/genética , Silenciador del Gen
20.
PeerJ ; 12: e17994, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39221266

RESUMEN

Background: Zinc (Zn) content is of great importance in healthy human diet, crop productivity and stress tolerance in soils with zinc deficiency. The genes used to increase yield per unit area such as semi-dwarf 1 (sdw1) is commonly considered to reduce mineral content of grain. Methods: In the present study, influence of sdw1.d, a widely used allele for short plant height in barley breeding, on zinc accumulation and tolerance to zinc deficiency were investigated. A near isogenic line of sdw1.d allele, its recurrent parent Tokak 157/37 and donor parent Triumph were grown in zinc-deficient and-sufficient hydroponic cultures. Two experiments were conducted until heading stage and physiological maturity. Results: In zinc-deficient conditions, sdw1.d allele increased shoot dry weight by 112.4 mg plant-1, shoot Zn concentration by 0.9 ppm, but decreased root Zn concentration by 6.6 ppm. It did not affect grain characteristics, but increased grain Zn content. In zinc-sufficient conditions, sdw1.d allele increased shoot Zn content, and decreased root Zn content. sdw1.d did not affect grain weight but increased grain Zn concentration by about 30% under zinc-sufficient conditions. The results showed that sdw1.d allele has no negative effect on tolerance to zinc deficiency, and even promotes tolerance to zinc deficiency by more Zn translocation. It was revealed that sdw1.d allele improves Zn accumulation under both zinc-deficient and zinc-sufficient condition. The sdw1.d allele could contribute to solving the problems in plant growth and development caused by zinc-deficiency via improving tolerance to zinc-deficiency. It could also provide a better Zn biofortification.


Asunto(s)
Alelos , Hordeum , Zinc , Zinc/deficiencia , Zinc/metabolismo , Hordeum/genética , Hordeum/metabolismo , Raíces de Plantas/metabolismo , Raíces de Plantas/genética , Fitomejoramiento
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