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[This corrects the article DOI: 10.3389/fmicb.2023.1202266.].

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The exceptionally long and protracted aridity in the Atacama Desert (AD), Chile, provides an extreme, terrestrial ecosystem that is ideal for studying microbial community dynamics under hyperarid conditions. Our aim was to characterize the temporal response of hyperarid soil AD microbial communities to ex situ simulated rainfall (5% g water/g dry soil for 4 weeks) without nutrient amendment. We conducted replicated microcosm experiments with surface soils from two previously well-characterized AD hyperarid locations near Yungay at 1242 and 1609 masl (YUN1242 and YUN1609) with distinct microbial community compositions and average soil relative humidity levels of 21 and 17%, respectively. The bacterial and archaeal response to soil wetting was evaluated by 16S rRNA gene qPCR, and amplicon sequencing. Initial YUN1242 bacterial and archaeal 16S rRNA gene copy numbers were significantly higher than for YUN1609. Over the next 4 weeks, qPCR results showed significant increases in viable bacterial abundance, whereas archaeal abundance decreased. Both communities were dominated by 10 prokaryotic phyla (Actinobacteriota, Proteobacteria, Chloroflexota, Gemmatimonadota, Firmicutes, Bacteroidota, Planctomycetota, Nitrospirota, Cyanobacteriota, and Crenarchaeota) but there were significant site differences in the relative abundances of Gemmatimonadota and Chloroflexota, and specific actinobacterial orders. The response to simulated rainfall was distinct for the two communities. The actinobacterial taxa in the YUN1242 community showed rapid changes while the same taxa in the YUN1609 community remained relatively stable until day 30. Analysis of inferred function of the YUN1242 microbiome response implied an increase in the relative abundance of known spore-forming taxa with the capacity for mixotrophy at the expense of more oligotrophic taxa, whereas the YUN1609 community retained a stable profile of oligotrophic, facultative chemolithoautotrophic and mixotrophic taxa. These results indicate that bacterial communities in extreme hyperarid soils have the capacity for growth in response to simulated rainfall; however, historic variations in long-term hyperaridity exposure produce communities with distinct putative metabolic capacities.

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Determining which microorganisms are active within soil communities remains a major technical endeavor in microbial ecology research. One promising method to accomplish this is coupling bioorthogonal non-canonical amino acid tagging (BONCAT) with fluorescence activated cell sorting (FACS) which sorts cells based on whether or not they are producing new proteins. Combined with shotgun metagenomic sequencing (Seq), we apply this method to profile the diversity and potential functional capabilities of both active and inactive microorganisms in a biocrust community after being resuscitated by a simulated rain event. We find that BONCAT-FACS-Seq is capable of discerning the pools of active and inactive microorganisms, especially within hours of applying the BONCAT probe. The active and inactive components of the biocrust community differed in species richness and composition at both 4 and 21 h after the wetting event. The active fraction of the biocrust community is marked by taxa commonly observed in other biocrust communities, many of which play important roles in species interactions and nutrient transformations. Among these, 11 families within the Firmicutes are enriched in the active fraction, supporting previous reports indicating that the Firmicutes are key early responders to biocrust wetting. We highlight the apparent inactivity of many Actinobacteria and Proteobacteria through 21 h after wetting, and note that members of the Chitinophagaceae, enriched in the active fraction, may play important ecological roles following wetting. Based on the enrichment of COGs in the active fraction, predation by phage and other bacterial members, as well as scavenging and recycling of labile nutrients, appear to be important ecological processes soon after wetting. To our knowledge, this is the first time BONCAT-FACS-Seq has been applied to biocrust samples, and therefore we discuss the potential advantages and shortcomings of coupling metagenomics to BONCAT to intact soil communities such as biocrust. In all, by pairing BONCAT-FACS and metagenomics, we are capable of highlighting the taxa and potential functions that typifies the microbes actively responding to a rain event.

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Warming-induced changes in precipitation regimes, coupled with anthropogenically enhanced nitrogen (N) deposition, are likely to increase the prevalence, duration, and magnitude of soil respiration pulses following wetting via interactions among temperature and carbon (C) and N availability. Quantifying the importance of these interactive controls on soil respiration is a key challenge as pulses can be large terrestrial sources of atmospheric carbon dioxide (CO2 ) over comparatively short timescales. Using an automated sensor system, we measured soil CO2 flux dynamics in the Colorado Desert-a system characterized by pronounced transitions from dry-to-wet soil conditions-through a multi-year series of experimental wetting campaigns. Experimental manipulations included combinations of C and N additions across a range of ambient temperatures and across five sites varying in atmospheric N deposition. We found soil CO2 pulses following wetting were highly predictable from peak instantaneous CO2 flux measurements. CO2 pulses consistently increased with temperature, and temperature at time of wetting positively correlated to CO2 pulse magnitude. Experimentally adding N along the N deposition gradient generated contrasting pulse responses: adding N increased CO2 pulses in low N deposition sites, whereas adding N decreased CO2 pulses in high N deposition sites. At a low N deposition site, simultaneous additions of C and N during wetting led to the highest observed soil CO2 fluxes reported globally at 299.5 µmol CO2  m-2  s-1 . Our results suggest that soils have the capacity to emit high amounts of CO2 within small timeframes following infrequent wetting, and pulse sizes reflect a non-linear combination of soil resource and temperature interactions. Importantly, the largest soil CO2 emissions occurred when multiple resources were amended simultaneously in historically resource-limited desert soils, pointing to regions experiencing simultaneous effects of desertification and urbanization as key locations in future global C balance.

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Understanding pathways connecting urbanization to the recharge process across the land surface and river environment is of great significance in achieving low-impact development. Accordingly, the contribution of an urbanized region with a low and high development rate, along with the expected overflow into the river network resulting from increased impervious surfaces, was assessed in the recharge rate at Jackson, Tennessee. To this end, first, the losses were calculated using the standard and modified SCS-CN methods for the maximum probable flood condition. Then, TUFLOW was applied to simulate the two-dimensional flood for a historic 24-h probable maximum precipitation event with a 100-year return period. The results of TUFLOW were later calibrated using the results of standard and modified SCS-CN methods. A calibrated MODFLOW was employed to assess the effects of urbanization and, consequently, the plausible extended river network on the recharge rate. Results revealed that the West Wood contribution in groundwater recharge was 19 % less than the Musa Street, while it supplies approximately 2.7 % more flow than Musa Street. The performance evaluation results of TUFLOW showed 0.4916 and 0.689 as Nash-Sutcliffe, respectively, for the standard and modified SCS-CN methods. Although the flow velocity and depth were respectively increased by 3.3 % and 8.3 % under modified SCS-CN compared to the standard one, the soil water storage capacity remained constant at equal to 0.16 mm. Results revealed that the maximum soil water storage capacity was fulfilled soon through the modified SCS-CN than the standard method leading to higher flood volume and discharge. To this end, the discharge resulting from modified SCS-CN was approximately 1.5 times higher than that in the standard method under the same precipitation condition. Our findings suggest that designing any construction, mainly dams downstream, based on the modified SCS-CN estimations will provide more safety, particularly in crowded regions. Also, overflowing the excess surface runoff into the river network resulted from the increased impervious surface amplifying the flow volume, depth, and velocity across the river networks, finally leaving the area without increasing the aquifer's recharge rate. The results provide insights into possible sustainable development options and flood management in the built-up area.

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The important effect of soil wetting and drying cycle (WDC) on soil structure, and the consequent effect on pollutant fate is underexplored. We thoroughly investigated the changes in soil structure and in leaching of Alion (indaziflam) and Express (tribenuron methyl), pre and post WDC, from two clayey soils and two loamy soils under different land uses (uncultivated, field crops, and orchards). Soil stability was quantified by an aggregate durability index we recently developed. WDC did not affect the stability of the sandy-loam soils, as expected. However, for the sandy-clay-loam with high CaCO3 content aggregation was observed. For the clayey soils with similar CaCO3, aggregation and disaggregation were obtained, for a soil with relatively low and high SOM, respectively. The stability trends are reflected by the ratio between the contents of inorganic carbon and soil organic matter (SOM), CaCO3/SOM, normalized to the clay content. Aggregation was explained by CaCO3 cementation, while disaggregation was attributed to high clay content and to alterations in SOM conformation post WDC. These opposite trends, obtained for the two clayey soils, were confirmed by analyzing changes in soil packing employing X-ray tomography (micro-CT). Our results clearly demonstrated that soil aggregation and disaggregation, induced by a WDC, suppresses and enhances herbicide mobility, respectively. However, the effect of WDC on herbicide leaching was not noticeable for Alion upon its high adsorption to a clayey soil, indicating that herbicide physical-chemical properties may dominate. Finally, WDC induces micron-scale changes in aggregate structure, which have a notable effect on pollutant mobility and fate in the environment.

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Among the diverse techniques for monitoring soil moisture, capacitance-type soil moisture sensors are popular because of their low cost, low maintenance requirements, and acceptable performance. However, although in laboratory conditions the accuracy of these sensors is good, when installed in the field they tend to show large sensor-to-sensor differences, especially under drip irrigation. It makes difficult to decide in which positions the sensors are installed and the interpretation of the recorded data. The aim of this paper is to study the variability involved in the measurement of soil moisture by capacitance sensors in a drip-irrigated orchard and, using this information, find ways to optimize their usage to manage irrigation. For this purpose, the study examines the uncertainties in the measurement process plus the natural variability in the actual soil water dynamics. Measurements were collected by 57 sensors, located at 10 combinations of depth and position relative to the dripper. Our results showed large sensor-to-sensor differences, even when installed at equivalent depth and coordinates relative to the drippers. In contrast, differences among virtual sensors simulated using a HYDRUS-3D model at those soil locations were one order of magnitude smaller. Our results highlight, as a possible cause for the sensor-to-sensor differences in the measurements by capacitance sensors, the natural variability in size, shape, and centering of the wet area below the drippers, combined with the sharply defined variation in water content at the soil scale perceived by the sensors.

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To reveal the impact of soil moisture distributions on nitrous oxide (N2O) emissions from wet soils irrigated by sub-surface drip irrigation (SDI) with different surface soil wetting proportions, pot experiments were conducted, with surface irrigation (SI) as a control. Results indicated that irrigation triggered N2O pulsing effect in all SDI treatments, yet N2O values reduced with the decrease of surface soil wetting proportions of SDI irrigated soils, and the occurrence times were lagged. The peak N2O fluxes and the corresponding soil water filled pore space (WFPS), as well as the coefficients of determination (R²) of the exponential function between N2O fluxes and soil WFPS, decreased with the reduction of surface soil wetting proportions with SDI treatment, and from the central sub-region to the periphery sub-region. The pulse period contributed most to the reduction of N2O emissions in SDI compared to SI treatments and should be a key period for N2O emission mitigation. Over the whole experimental period, the area-weighted average cumulative N2O fluxes from SDI treatments were 82.3⁻157.3 mg N2O m-2 lower than those from SI treatment, with periphery sub-regions of R3 and R4 (radius of 19⁻27 cm and 28⁻36 cm from the emitter horizontally) contributing to more than 75.8% of the total N2O emission mitigation. These results suggest that reducing surface soil wetting proportions or the increments of topsoil WFPS for SDI irrigated soils is a promising strategy for N2O emission reduction.

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Rainfall partitioning by desert shrub canopy modifies the redistribution of incident rainfall under the canopy, and may affect the distribution pattern of soil moisture around the plant. This study examined the distribution of rainfall and the response of soil moisture beneath the canopy of two dominant desert shrubs, Caragana korshinskii and Artemisia ordosica, in the revegetation area at the southeastern edge of the Tengger Desert. The results showed that throughfall and stemflow ave-ragely occupied 74.4%, 11.3% and 61.8%, 5.5% of the gross precipitation for C. korshinskii and A. ordosica, respectively. The mean coefficients of variation (CV) of throughfall were 0.25 and 0.30, respectively. C. korshinski were more efficient than A. ordosica on stemflow generation. The depth of soil wetting front around the stem area was greater than other areas under shrub canopy for C. korshinski, and it was only significantly greater under bigger rain events for A. ordosica. The shrub canopy could cause the unevenness of soil wetting front under the canopy in consequence of rainfall redistribution induced by xerophytic shrub.

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