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1.
Sci Rep ; 14(1): 19866, 2024 Aug 27.
Artículo en Inglés | MEDLINE | ID: mdl-39191823

RESUMEN

Metal-organic frameworks (MOFs) play a pivotal role in modern material science, offering unique properties such as flexibility, substantial pore space, distinctive structure, and large surface area. Recently, zinc-based MOFs have attracted significant attention, particularly in the biomedical arena, owing to their versatile applications in drug delivery, biosensing, and cancer imaging. However, there remains a crucial need to explore and understand the structural properties of zinc silicate-based MOFs to fully exploit their potential in various applications. The objective of this study is to address this need by employing topological modeling techniques to characterize zinc silicate networks. Utilizing connection number concept of chemical graph theory and novel AL molecular descriptors, we aim to investigate the structural intricacies of these MOFs. More precisely, zinc silicate-based MOF networks are topologically modeled via novel AL topological indices, and derived mathematical closed form formulae for them. By comparing experimental and calculated values and constructing linear regression models, the predictive capabilities of the proposed descriptors are evaluated. Specifically, the performance of derived topological indices against the physico-chemical properties of octane isomers is assessed, which provide valuable insights into their predictive potential. The findings of this study demonstrated the potential of novel AL indices in predicting a wide range of important physico-chemical properties, further enhancing their practicality in materials science and beyond.

2.
Sci Rep ; 14(1): 20029, 2024 08 28.
Artículo en Inglés | MEDLINE | ID: mdl-39198520

RESUMEN

Cyclodextrin, a potent anti-tumor medication utilized predominantly in ovarian and breast cancer treatments, encounters significant challenges such as poor solubility, potential side effects, and resistance from tumor cells. Combining cyclodextrin with biocompatible substrates offers a promising strategy to address these obstacles. Understanding the atomic structure and physicochemical properties of cyclodextrin and its derivatives is essential for enhancing drug solubility, modification, targeted delivery, and controlled release. In this study, we investigate the topological indices of cyclodextrin using algebraic polynomials, specifically the degree-based M-polynomial and neighbor degree-based M-polynomial. By computing degree-based and neighbor degree-based topological indices, we aim to elucidate the structural characteristics of cyclodextrin and provide insights into its physicochemical behavior. The computed indices serve as predictive tools for assessing the health benefits and therapeutic efficacy of cyclodextrin-based formulations. In addition, we examined that the computed indices showed a significant relationship with the physicochemical characteristics of antiviral drugs. Graphical representations of the computed results further facilitate the visualization and interpretation of cyclodextrin's molecular structure, aiding researchers in designing novel drug delivery systems with improved pharmacological properties.


Asunto(s)
Ciclodextrinas , Ciclodextrinas/química , Solubilidad , Humanos , Fenómenos Químicos , Sistemas de Liberación de Medicamentos , Antivirales/química , Antineoplásicos/química , Antineoplásicos/farmacología
3.
Front Chem ; 12: 1410876, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39045335

RESUMEN

This study investigates the quantitative structure-property relationship (QSPR) modeling of guar gum biomolecules, focusing on their structural parameters. Guar gum, a polysaccharide with diverse industrial applications, exhibits various properties such as viscosity, solubility, and emulsifying ability, which are influenced by its molecular structure. In this research, M -polynomial and associated topological indices are employed as structural descriptors to represent the molecular structure of guar gum. The M -polynomial and associated topological indices capture important structural features, including size, shape, branching, and connectivity. By correlating these descriptors with experimental data on guar gum properties, predictive models are developed using regression analysis techniques. The analysis revealed a strong correlation between the boiling point and molecular weight and all the considered topological descriptors. The resulting models offer insights into the relationship between guar gum structure and its properties, facilitating the optimization of guar gum production and application in various industries. This study demonstrates the utility of M -polynomial and QSPR modeling in elucidating structure-property relationships of complex biomolecules like guar gum, contributing to the advancement of biomaterial science and industrial applications.

4.
Sci Rep ; 14(1): 10065, 2024 May 02.
Artículo en Inglés | MEDLINE | ID: mdl-38698119

RESUMEN

Chemical graph theory has made a significant contribution to understand the chemical compound properties in the modern era of chemical science. At present, calculation of the topological indices is one of most important area of research in the field of chemical graph theory. Cyclodecane is a cyclic hydrocarbon with the chemical formula C 10 H 20 . It consists of a ring of ten carbon atoms bonded together in a cyclical structure. Cyclodecane chains can be part of larger molecules or polymers, where multiple cyclodecane rings are connected together. These molecules can have various applications in chemistry, materials science, and pharmaceuticals. This article aims to determine expected values of some connectivity based topological indices of random cyclodecane chains, containing saturated hydrocarbons with at least two rings. It also compares these descriptors using explicit formulae, numerical tables and present graphical profiles of these comparisons.

5.
Front Chem ; 12: 1388097, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38736686

RESUMEN

Cyclooctane is classified as a cycloalkane, characterized by the chemical formula C 8 H 16. It consists of a closed ring structure composed of eight carbon atoms and sixteen hydrogen atoms. A cyclooctane chain typically refers to a series of cyclooctane molecules linked together. Cyclooctane and its derivatives find various applications in chemistry, materials science, and industry. Topological indices are numerical values associated with the molecular graph of a chemical compound, predicting certain physical or chemical properties. In this study, we calculated the expected values of degree-based and neighborhood degree-based topological descriptors for random cyclooctane chains. A comparison of these topological indices' expected values is presented at the end.

6.
Sci Rep ; 14(1): 7713, 2024 Apr 02.
Artículo en Inglés | MEDLINE | ID: mdl-38565867

RESUMEN

Cyclooctane is a cycloalkane consisting of carbon and hydrogen atoms arranged in a closed ring structure. Cyclooctane chains can be found in various organic compounds and are significant in the field of organic chemistry due to their diverse reactivity and properties. The atom-bond connectivity index ( A B C ), the geometric-arithmetic index ( G A ), the arithmetic-geometric index ( A G ) and the forgotten index ( F ) are four well-studied molecular descriptors that have found applications in QSPR and QSAR studies. These topological descriptors have shown significant correlations with different physiochemical properties of octane isomers. In this work, the expected values of four degree based topological descriptors for random cyclooctane chains are calculated. An analytical comparison is given between the expected values of A B C , G A , A G , and F indices of random cyclooctane chains.

7.
Comb Chem High Throughput Screen ; 27(11): 1629-1641, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38213147

RESUMEN

BACKGROUND: Chemical graph theory has been used to mathematically model the various physical and biological aspects of chemical substances. A mathematical formulation that may be applied to any graph and can characterise a molecule structure is known as a topological index or molecular descriptor. METHOD: It is convenient and efficient to analyse the mathematical values and further research on various physical properties of a molecule based on these molecular descriptors. They provide useful alternatives to lengthy, expensive, and labour-intensive laboratory experiments. The topological indices can be used to predict the chemical structures, physicochemical properties, and biological activities using quantitative structure-activity relationships (QSARs) and quantitative structure-property relationships (QSPRs). RESULT: In this study, the molecular descriptors of the Dodeca-benzo-circumcorenene compounds are derived based on their corresponding molecular structures. CONCLUSION: The computed indices are then compared graphically to study their relationship with the molecular structure and with each other..


Asunto(s)
Relación Estructura-Actividad Cuantitativa , Estructura Molecular
8.
Entropy (Basel) ; 25(7)2023 Jul 21.
Artículo en Inglés | MEDLINE | ID: mdl-37510039

RESUMEN

Graph entropy plays an essential role in interpreting the structural information and complexity measure of a network. Let G be a graph of order n. Suppose dG(vi) is degree of the vertex vi for each i=1,2,…,n. Now, the k-th degree-based graph entropy for G is defined as Id,k(G)=-∑i=1ndG(vi)k∑j=1ndG(vj)klogdG(vi)k∑j=1ndG(vj)k, where k is real number. The first-degree-based entropy is generated for k=1, which has been well nurtured in last few years. As ∑j=1ndG(vj)k yields the well-known graph invariant first Zagreb index, the Id,k for k=2 is worthy of investigation. We call this graph entropy as the second-degree-based entropy. The present work aims to investigate the role of Id,2 in structure property modeling of molecules.

9.
Curr Org Synth ; 2023 Jun 06.
Artículo en Inglés | MEDLINE | ID: mdl-37282655

RESUMEN

BACKGROUND: Chemical graph theory is a sub-branch of mathematical chemistry, assuming each atom of a molecule is a vertex and each bond between atoms as an edge. OBJECTIVE: Owing to this theory, it is possible to avoid the difficulties of chemical analysis because many of the chemical properties of molecules can be determined and analyzed via topological indices. Due to these parameters, it is possible to determine the physicochemical properties, biological activities, environmental behaviours and spectral properties of molecules. Nowadays, studies on the zero divisor graph of Z_n via topological indices is a trending field in spectral graph theory. METHODS: For a commutative ring R with identity, the prime ideal sum graph of R is a graph whose vertices are nonzero proper ideals of R and two distinctvertices I and J are adjacent if and only if I+J is a prime ideal of R. RESULTS: In this study the forgotten topological index and Wiener index of the prime ideal sum graph of Z_n are calculated for n=p^α,pq,p^2 q,p^2 q^2,pqr,p^3 q,p^2 qr,pqrs where p,q,r and s are distinct primes and a Sage math code is developed for designing graph and computing the indices. CONCLUSION: In the light of this study, it is possible to handle the other topological descriptors for computing and developing new algorithms for next studies and to study some spectrum and graph energies of certain finite rings with respect to PIS-graph easily.

10.
Int J Quantum Chem ; 123(4): e27030, 2023 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-36718482

RESUMEN

Topological indices are an important method for understanding the fundamental topology of chemical structures. Quantitative structure properties relationship (QSPR) is an analytical approach for breaking down a molecule into a sequence of numerical values that describe the chemical and physical characteristics of the molecule. In this article, we have developed the QSPR analysis between eigenvalue-based topological indices and physical properties of COVID-19 drugs to predict the significance level of eigenvalue based indices. We have to use MATLAB for the computation of indices and SPSS for analysis. We show that positive interia index, signless Laplacian Estrada index and Randic energy are the best predictors of molar reactivity, polar surface area and molecular weight, respectively.

11.
J Mol Graph Model ; 118: 108353, 2023 01.
Artículo en Inglés | MEDLINE | ID: mdl-36265269

RESUMEN

A topological index or a descriptor is a graph invariant that describes the structure of a graph as a numerical value. This paper proposes eight novel indices called AL-indices, based on distance and degree, and analyzes their behavior to show that they can serve as potentially useful molecular descriptors. We find that among the proposed indices many have very good discriminative power when compared to the existing vertex-degree based indices and justifies the requirement of these new indices. Further, we propose a method to compute these indices and vertex-degree-based indices from a recently proposed graph matrix, referred to as neighborhood matrix. Computationally, we correlate the proposed indices' efficiency against the octane isomers' and polychlorobiphenyls' physicochemical properties. We perform a comparative study of these indices with a few well-known vertex degree-based indices. Further, the proposed indices' discriminative capacity is analyzed and shown to have higher discriminative power on the considered datasets. Among all the indices under study, four indices, namely AL4, AL5, AL7, and AL8 have shown the highest discriminative power on the set of octane isomers. While the indices AL4 and AL7 have the highest discriminative power on the set of PCB molecules compared to the other VDB indices. Among the proposed and considered indices, we show that the first index AL1 has a good correlation with the Acentric factor and entropy of octane isomer and with the total surface area, log-water-solubility, relative retention time, octanol-water-partition, and log-water-activity coefficient of PCBs.


Asunto(s)
Octanos , Agua , Entropía , Solubilidad
12.
Front Chem ; 8: 613873, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-33614594

RESUMEN

In this article, we provide new formulas to compute the reduced reciprocal randic index, Arithmetic geometric1 index, SK index, SK 1 index, SK 2 index, edge version of the first zagreb index, sum connectivity index, general sum connectivity index, and the forgotten index using the M-polynomial and finding these topological indices for a boron triangular nanotube. We also elaborate the results with graphical representations.

13.
Mol Inform ; 38(1-2): e1800076, 2019 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-30091531

RESUMEN

The Wiener polarity index (usually denoted by W p ) of an alkane is the number of unordered pairs of carbon atoms which are separated by three carbon-carbon bonds. This topological index W p is useful for predicting the boiling points of alkanes. Deng [MATCH Commun. Math. Comput. Chem. 66 (2011) 305] proved that the maximum W p value among all alkanes, with n carbon atoms, is 3 n - 15 . The main purpose of present paper is to find all those alkanes with n carbon atoms, which attain the maximum value of W p .


Asunto(s)
Algoritmos , Alcanos/química , Modelos Químicos , Carbono/análisis , Isomerismo
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