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1.
Mar Pollut Bull ; 207: 116906, 2024 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-39217871

RESUMEN

Marine thermal fluctuation profoundly influences energy metabolism, physiology, and survival of marine life. In the present study, short-term and long-term high-temperature stresses were found to affect gluconeogenesis by inhibiting PEPCK activity in the Pacific oyster (Crassostrea gigas), which is a globally distributed species that encounters significant marine thermal fluctuations in intertidal zones worldwide. CgCREBL2, a key molecule in the regulation of gluconeogenesis, plays a critical role in the transcriptional regulation of PEPCK in gluconeogenesis against high-temperature stress. CgCREBL2 was able to increase the transcription of CgPEPCK by either binding the promoter of CgPEPCK gene or activating CgPGC-1α and CgHNF-4α after short-term (6 h) high-temperature stress, while only by binding CgPEPCK after long-term (60 h) high-temperature stress. These findings will further our understanding of the effect of marine thermal fluctuation on energy metabolism on marine organisms.


Asunto(s)
Crassostrea , Regulación de la Expresión Génica , Gluconeogénesis , Animales , Crassostrea/genética , Crassostrea/fisiología , Gluconeogénesis/genética , Calor
2.
Polymers (Basel) ; 16(16)2024 Aug 10.
Artículo en Inglés | MEDLINE | ID: mdl-39204487

RESUMEN

The optimization of the process of polymer film orientational drawing using the local heater was investigated. One of the problems with this technology is that the strength of the resulting fibers differs significantly from the theoretical estimates. It is assumed that one of the reasons is related to the peculiarity of this technology, when at the point of drawing the film is heated only on one side, which creates a temperature difference between the sides of the film in contact with the heater and the non-contact sides of the film in the air. Estimates show that even a small temperature difference of just 1 °C between these surfaces leads to a significant difference in the rate of plastic deformation of the corresponding near-surface layers. As a consequence, during hardening, in the stretching region, tensile stress is concentrated on the "cold" side of the film, and this effect can presumably lead to the generation of more defects overthere. It has been suggested that defects arising during first stage of hardening, namely, neck formation, can serve as a trigger for the formation of defects such as kink bands on the "cold" side with further orientational strengthening due to plastic deformation of the resulting fibrillar structure, at the boundaries of which microcracks are formed, leading to rupture of the oriented sample. The numerical calculation of heat propagation due to heat conduction in the film from the local surface of the heater is carried out and the temperature distribution along the thickness and width of the film during drawing is found. The temperature difference in the heated layer of the film between the contact and non-contact sides with the heater was calculated depending on the thickness of the film and the speed of its movement along the heater. It was found that the most homogeneous temperature distribution over the film thickness, which is required, by default, for the synchronous transformation of the unoriented initial folded lamellar structure into a fibrillar structure, is observed only for films with a thickness of less than 50 µm. The calculation allows us to scientifically justify the choice of orientation drawing speed and optimal thickness of the oriented polymer film, which is extremely important, for example, for obtaining super-strong and high-modulus UHMWPE filaments used in products for various purposes: from body armor to sports equipment and bioimplants.

3.
Front Phys ; 10: 1099958, 2023 Jan 09.
Artículo en Inglés | MEDLINE | ID: mdl-36685106

RESUMEN

A colloidal particle placed inside the cell cytoplasm is enmeshed within a network of cytoskeletal fibres immersed in the cytosolic fluid. The translational mode is believed to yield different rheological parameters than the rotational mode, given that these modes stretch the fibers differently. We compare the parameters for Michigan Cancer Foundation-7 (MCF-7) cells in this manuscript and find that the results are well comparable to each other. At low values of 0 Hz viscosity, the rotational and translational viscoelasticity matches well. However, discrepancies appear at higher values which may indicate that the cytoskeletal modes involved in rotation and translation of the particle are getting invoked. We also show that the 0 Hz viscosity increases as the cell ages under the conditions of constant room temperature of 25°C on the sample chamber.

4.
Nanotechnology ; 33(50)2022 Oct 03.
Artículo en Inglés | MEDLINE | ID: mdl-36099774

RESUMEN

Stochastic resonance (SR) in a single-electron system is expected to allow information to be correctly carried and processed by single electrons in the presence of thermal fluctuations. Here, we comprehensively study thermally driven single-electron SR. The response of the system to a weak voltage signal is formulated by considering the single-electron tunneling rate, instead of the Kramers' rate generally used in conventional SR models. The model indicates that the response of the system is maximized at finite temperature and that the peak position is determined by the charging energy. This model quantitatively reproduces the results of a single-electron device simulator. Single-electron SR is also demonstrated using a GaAs-based single-electron system that integrates a quantum dot and a high-sensitivity charge detector. The developed model will contribute to our understanding of single-electron SR and will facilitate accurate prediction, design, and control of single-electron systems.

5.
Int J Biol Macromol ; 222(Pt A): 1101-1109, 2022 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-36174869

RESUMEN

Stereocomplexation between enantiomeric poly(l-lactide) (PLLA) and poly(d-lactide) (PDLA) is a promising sustainable approach and gaining momentum to overcome the shortcomings of polylactide (PLA) for its use as a replacement for fossil-based plastics. Filler addition in tailoring the crystallization of stereocomplex PLA (SC-PLA) has attracted extensive attention; however, research has primarily focused on the heterogeneous nucleation effect of filler. The impact of filler on the chain behavior of SC-PLA during crystallization has not been exclusively discussed, and the rigid amorphous fraction (RAF) development remains unknown. In this study, the crystallization of PLLA/PDLA blends was modified by low loading of layered double hydroxide (LDH) (≤ 1 wt%) with the proposed local effect of such filler, and additional RAF development was incurred. In the early stage of crystallization, LDH facilitates the pairing of PLLA and PDLA and arrests the ordered SC pairs during the dynamic balance between the separation and pairing of racemic segments. This explains the severely suppressed homochiral (HC) crystallization, promoted SC crystallization, and additional RAF formation driven by the nucleation-induced chain ordering. This work, for the first time, highlights the role of LDH in creating SC-PLA with tailorable polymorphism and RAF, where the mechanism can be extended to other filler-type nucleator systems.


Asunto(s)
Hidróxidos , Poliésteres , Cristalización , Poliésteres/química , Estereoisomerismo
6.
J Phys Condens Matter ; 34(38)2022 Jul 22.
Artículo en Inglés | MEDLINE | ID: mdl-35803250

RESUMEN

Stacking fault tetrahedra (SFTs) are highly interesting three-dimensional vacancy defects in quenched, plastically deformed or irradiated face-centered-cubic metals and have a significant impact on the properties and subsequent microstructural evolution of the materials. Their formation mechanism and stability relative to two-dimensional vacancy loops are still debated. Equilateral hexagonal Frank vacancy loops (faulted, sessile) observed in microscopy have been considered unable to directly transform to SFTs due to separation of Shockley partial dislocations as well as embryonic stacking faults. Here using sufficiently long (up to tens of nanoseconds) molecular dynamic simulations, we demonstrate that such a transformation can in fact take place spontaneously at elevated temperatures under thermal fluctuation, reducing potential energy of defected atoms by <0.05 eV/atom. The transformation becomes easier with increasing temperature or decreasing loop size.

7.
J Anim Ecol ; 91(2): 391-403, 2022 02.
Artículo en Inglés | MEDLINE | ID: mdl-34775602

RESUMEN

Temperature and thermal variability are increasing worldwide, with well-known survival consequences. However, effects on other potentially more thermally sensitive reproductive traits are less understood, especially when considering thermal variation. Studying the consequences of male reproduction in the context of climate warming and ability to adapt is becoming increasingly relevant. Our goals were to test how exposure to different average temperatures that either fluctuated or remained constant impacts different male reproductive performance traits and to assess adaptive potential to future heat stress. We took advantage of a set of Drosophila melanogaster isogenic lines of different genotypes, exposing them to four different thermal conditions. These conditions represented a benign and a stressful mean temperature, applied either constantly or fluctuating around the mean and experienced during development when heat stress avoidance is hindered because of restricted mobility. We measured subsequent male reproductive performance for mating success, fertility, number of offspring produced and offspring sex ratio, and calculated the influence of thermal stress on estimated heritability and evolvability of these reproductive traits. Both costs and benefits to different thermal conditions on reproductive performance were found, with some responses varying between genotypes. Mating success improved under fluctuating benign temperature conditions and declined as temperature stress increased regardless of genotype. Fertility and productivity were severely reduced at fluctuating mean high temperature for all genotypes, but some genotypes were unaffected at constant high mean temperature. These more thermally robust genotypes showed a slight increase in productivity under the fluctuating benign condition compared to constant high temperature, despite both thermal conditions sharing the same temperature for 6 hr daily. Increasing thermal stress resulted in higher heritability and evolvability. Overall, the effects of temperature on reproductive performance depended on the trait and genotype; performance of some traits slightly increased when high temperatures were experienced for short periods but decreased substantially even when experiencing a benign temperature for a portion of each day. While thermal stress increased genetic variation that could provide adaptive potential against climate warming, this is unlikely to compensate for the overall severe negative effect on reproductive performance as mean temperature and variance increase.


Asunto(s)
Drosophila melanogaster , Reproducción , Adaptación Fisiológica , Animales , Drosophila melanogaster/genética , Respuesta al Choque Térmico , Calor , Masculino , Temperatura
8.
Sci Technol Adv Mater ; 22(1): 658-682, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34512176

RESUMEN

To study the temperature dependence of magnetic properties of permanent magnets, methods of treating the thermal fluctuation causing the thermal activation phenomena must be established. To study finite-temperature properties quantitatively, we need atomistic energy information to calculate the canonical distribution. In the present review, we report our recent studies on the thermal properties of the Nd2Fe14B magnet and the methods of studying them. We first propose an atomistic Hamiltonian and show various thermodynamic properties, for example, the temperature dependences of the magnetization showing a spin reorientation transition, the magnetic anisotropy energy, the domain wall profiles, the anisotropy of the exchange stiffness constant, and the spectrum of ferromagnetic resonance. The effects of the dipole-dipole interaction (DDI) in large grains are also presented. In addition to these equilibrium properties, the temperature dependence of the coercivity of a single grain was studied using the stochastic Landau-Lifshitz-Gilbert equation and also by the analysis of the free energy landscape, which was obtained by Monte Carlo simulation. The upper limit of coercivity at room temperature was found to be about 3 T at room temperature. The coercivity of a polycrystalline magnet, that is, an ensemble of interactinve grains, is expected to be reduced further by the effects of the grain boundary phase, which is also studied. Surface nucleation is a key ingredient in the domain wall depinning process. Finally, we study the effect of DDI among grains and also discuss the distribution of properties of grains from the viewpoint of first-order reversal curve.

9.
Biochem Biophys Res Commun ; 533(4): 1413-1418, 2020 12 17.
Artículo en Inglés | MEDLINE | ID: mdl-33097182

RESUMEN

V-ATPases are ubiquitous proton-transporting ATPases of eukaryotic and prokaryotic membranes that utilize energy from ATP hydrolysis. The hydrophilic catalytic part called V1-ATPase is composed of a ring-shaped hexametric A3B3 complex and a central DF shaft. We previously proposed a rotation mechanism of the Enterococcus hirae V1-ATPase based on the crystal structures of the V1 and A3B3 complexes. However, the driving force that induces the conformational changes of A3B3 and rotation of the DF shaft remains unclear. In this study, we investigated the binding affinity changes between subunits of V1-ATPase by surface plasmon resonance analysis. The binding of ATP to subunit A was found to considerably increase the affinity between the A and B subunits, and thereby ATP binding contributes to forming the A1B1 tight conformation. Furthermore, the DF shaft bound to the reconstituted A1B1 complex with high affinity, suggesting that the tight A1B1 complex is a major binding unit of the shaft in the A3B3 ring complex. Based on these results, we propose that rotation of the V1-ATPase is driven by affinity changes between each subunit via thermal fluctuations.


Asunto(s)
ATPasas de Translocación de Protón Vacuolares/química , ATPasas de Translocación de Protón Vacuolares/metabolismo , Adenosina Difosfato/química , Adenosina Difosfato/metabolismo , Adenosina Trifosfato/química , Adenosina Trifosfato/metabolismo , Modelos Moleculares , Conformación Proteica , Subunidades de Proteína , Proteínas Recombinantes de Fusión/química , Proteínas Recombinantes de Fusión/metabolismo , Rotación , Resonancia por Plasmón de Superficie , ATPasas de Translocación de Protón Vacuolares/genética
10.
ACS Appl Mater Interfaces ; 12(38): 43231-43249, 2020 Sep 23.
Artículo en Inglés | MEDLINE | ID: mdl-32794724

RESUMEN

The early detection and warning of the presence of hazardous gases have been well studied. We present a study that focuses on some fundamental properties of gas sensors for liquefied petroleum gas (LPG) using spinel nanoferrites, namely, CoSm0.1Fe1.9O4, CoCe0.1Fe1.9O4, MgCe0.1Fe1.9O4, and MgFe2O4. A highly sensitive and selective response of 846.34 at 225 °C toward 10,000 ppm concentration of LPG was recorded. Other flammable gases tested were hydrogen, methane, propane, and butane. Electronic conduction of LPG sensors near saturation showed simple electrical oscillations that can be attributed to the self-dissociation of water molecules physically adsorbed on the surface of the chemisorbed oxygen species due to proton transfer. The oscillatory behaviors follow fluctuations in the operating temperature attributed to heat transfer between the physisorbed water molecules and the hot sensor surface. This depends on the LPG concentration because higher LPG concentration gives rise to greater heat transfer from the sensors. The adsorption and desorption of these water molecule multilayers take a few hundreds of seconds at low concentrations, while the adsorption formation process takes longer at higher concentrations. Other parameters such as LPG exposure time, bias voltage, relative humidity, ambient conditions, operating temperatures, and temperature of the gas not only affect electrical oscillations and thermal fluctuations but also switch the dominant charge carriers from p- to n-type or vice versa. The type of sensor surface, either p- or n-type, did not appear to affect the oscillatory behavior, while the exposure time, short or long, determined the appearance and further behavior of the oscillations. The long-time exposure to 10,000 ppm concentration resulted in the resistance gradually decreasing due to the lack of oxygen supply, while at 5000 ppm, this was constant, stable, and oscillated indefinitely. Changing the dry air to argon gas as a carrier and for dilution of the hazardous gas prevented the electrical oscillations and thermal fluctuations and significantly lowered the response values. Both the inert ambient (argon gas) and changing operating temperature flipped the dominant charge carriers of these sensors. The concentration of these chemisorbed oxygen species governs the charge space and depletion layers. In addition, the spinel nanoferrites used contained higher oxygen vacancies than the lattice oxygen and chemisorbed oxygen. When using dry air, the oscillations were observed at 3000 ppm concentration, while using argon gas, they were observed at 7000 ppm concentration. The room-temperature LPG responses were about 35 and 80 under 45% relative humidity using dry air and argon gas, respectively. These room-temperature measurements showed electrical oscillations but did not show any thermal fluctuations or heat transfer phenomena. This study presents a deeper insight into the fundamentals of gas-sensing mechanisms and energy costs involved.

11.
J Comput Phys ; 386: 248-263, 2019 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-31787778

RESUMEN

The combination of fluid-structure interactions with stochasticity, due to thermal fluctuations, remains a challenging problem in computational fluid dynamics. We develop an efficient scheme based on the stochastic immersed boundary method, Stokeslets, and multiple timestepping. We test our method for spherical particles and filaments under purely thermal and deterministic forces and find good agreement with theoretical predictions for Brownian Motion of a particle and equilibrium thermal undulations of a semi-flexible filament. As an initial application, we simulate bio-filaments with the properties of F-actin. We specifically study the average time for two nearby parallel filaments to bundle together. Interestingly, we find a two-fold acceleration in this time between simulations that account for long-range hydrodynamics compared to those that do not, suggesting that our method will reveal significant hydrodynamic effects in biological phenomena.

12.
Arch Biochem Biophys ; 665: 30-35, 2019 04 15.
Artículo en Inglés | MEDLINE | ID: mdl-30796890

RESUMEN

The human red blood cell (RBC) membrane has significant elastic capabilities which can be described measuring typical membrane edge fluctuations and mechanical properties by optical techniques. The RBC elastic properties can be affected by changes in the surrounding media. In an attempt to elucidate the molecular mechanisms of the interaction of resveratrol with the red cell membrane and of its antioxidant capacity the changes in mechanical properties of the RBC membrane were analyzed. These studies were carried out through measurements of RBC membrane fluctuations in the presence of the oxidant agent HClO using thermal fluctuation spectroscopy (TFS). The observed results showed that the elastic capabilities of RBC changed with low concentration of hypochlorous acid but without morphological changes. However, in the presence of resveratrol the deformation and decrease of elastic capabilities induced by HClO on RBC decreased. These in vitro results demonstrated the protective effect of RV against the detrimental effects triggered by HClO upon human erythrocytes.


Asunto(s)
Antioxidantes/metabolismo , Eritrocitos/metabolismo , Resveratrol/sangre , Análisis Espectral/métodos , Membrana Eritrocítica/metabolismo , Humanos , Ácido Hipocloroso/metabolismo , Análisis de la Célula Individual
13.
J Exp Biol ; 222(Pt 4)2019 02 21.
Artículo en Inglés | MEDLINE | ID: mdl-30630964

RESUMEN

The antioxidant defense protects turtles from oxidative stress caused by adverse environment conditions, such as acute thermal fluctuations. However, it remains unclear how these defenses work. The present study examined changes in key enzymes of the enzymatic antioxidant system and the glutathione (GSH) system at both the mRNA and enzyme activity levels during acute cold exposure and recovery in juvenile Chinese soft-shelled turtles, Pelodiscus sinensis Transcript levels of the upstream regulator NF-E2-related factor 2 (Nrf2) were also measured. Turtles were acclimated at 28°C (3 weeks), then given acute cold exposure (8°C, 12 h) and finally placed in recovery (28°C, 24 h). The mRNA levels of cerebral and hepatic Nrf2 and of genes encoding downstream antioxidant enzymes did not change, whereas levels of nephric Nrf2, manganese superoxide dismutase (MnSOD) and glutathione peroxidase 4 (GPx4) mRNA decreased upon cold exposure. During recovery, Nrf2 mRNA remained stable in all three tissues, hepatic Cu/ZnSOD, MnSOD and catalase (CAT) mRNA levels increased, and nephric MnSOD and GPx4 mRNAs did not change from the values during cold exposure. In the GSH system, mRNA levels of most enzymes remained constant during cold exposure and recovery. Unmatched with changes in mRNA level, high and stable constitutive antioxidant enzyme activities were maintained throughout, whereas GPx activity significantly reduced in the kidney during cold exposure, and in liver and kidney during recovery. Our results suggest that the antioxidant defense regulation in response to acute cold exposure in P. sinensis may not be achieved at the transcriptional level, but may rely mainly on high constitutive antioxidant enzyme activities.


Asunto(s)
Antioxidantes/metabolismo , Frío , Factor 2 Relacionado con NF-E2/genética , Estrés Oxidativo , Proteínas de Reptiles/genética , Tortugas/fisiología , Animales , Factor 2 Relacionado con NF-E2/metabolismo , Proteínas de Reptiles/metabolismo , Tortugas/genética
14.
J Therm Biol ; 70(Pt B): 80-85, 2017 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-29108561

RESUMEN

Most research in physiological ecology has focused on the effects of mean changes in temperature under the classic "hot vs cold" acclimation treatment; however, current evidence suggests that an increment in both the mean and variance of temperature could act synergistically to amplify the negative effects of global temperature increase and how it would affect fitness and performance-related traits in ectothermic organisms. We assessed the effects of acclimation to daily variance of temperature on thermal performance curves of swimming speed in helmeted water toad tadpoles (Calyptocephalella gayi). Acclimation treatments were 20°C ± 0.1 SD (constant) and 20°C ± 1.5 SD (fluctuating). We draw two key findings: first, tadpoles exposed to daily temperature fluctuation had reduced maximal performance (Zmax), and flattened thermal performance curves, thus supporting the "vertical shift or faster-slower" hypothesis, and suggesting that overall swimming performance would be lower through an examination of temperatures under more realistic and ecologically-relevant fluctuating regimens; second, there was significant interindividual variation in performance traits by means of significant repeatability estimates. Our present results suggest that the widespread use of constant acclimation temperatures in laboratory experiments to estimate thermal performance curves (TPCs) may lead to an overestimation of actual organismal performance. We encourage the use of temperature fluctuation acclimation treatments to better understand the variability of physiological traits, which predict ecological and evolutionary responses to global change.


Asunto(s)
Anuros/fisiología , Natación/fisiología , Temperatura , Aclimatación , Animales , Larva/fisiología
15.
Biophys Chem ; 228: 47-54, 2017 09.
Artículo en Inglés | MEDLINE | ID: mdl-28697448

RESUMEN

Phenylketonuria (PKU) is an inborn error of phenylalanine metabolism due to mutations in phenylalanine hydroxylase (PAH). Recently, small compounds, known as pharmacological chaperones (PhCs), have been identified that restore the enzymatic activity of mutant PAHs. Understanding the mechanism of the reduction in enzymatic activity due to a point mutation in PAH and its restoration by PhC binding is important for the design of more effective PhC drugs. Thermal fluctuations of an enzyme can alter its activity. Here, molecular dynamics simulation show the thermal fluctuation of PAH is increased by introduction of the A313T mutation. Moreover, a simulation using the A313T-PhC complex model was also performed. Thermal fluctuation of the mutant was found to be reduced upon PhC binding, which contributes to restoring its enzymatic activity.


Asunto(s)
Fenilalanina Hidroxilasa/metabolismo , Sitios de Unión , Dominio Catalítico , Cristalografía por Rayos X , Simulación de Dinámica Molecular , Fenilalanina Hidroxilasa/química , Fenilalanina Hidroxilasa/genética , Mutación Puntual , Pliegue de Proteína , Pirimidinonas/química , Pirimidinonas/metabolismo , Temperatura
16.
J Mol Graph Model ; 74: 100-104, 2017 06.
Artículo en Inglés | MEDLINE | ID: mdl-28384497

RESUMEN

Graphene doped with nitrogen exhibits unique properties different than perfect graphene. The temperature distribution in nitrogen-doped graphene (N-graphene) and in the graphene with grain boundary is investigated using molecular dynamics simulations. The temperature distribution in nitrogen-doped graphene nanoribbon, containing two types of grain boundaries, was found to be sensitive to the number of dopants and grain boundary. We also found that there is a remarkable temperature gap in the temperature profile of N-graphene nanoribbon-containing a grain boundary. For any doping ratio N/C we found that the nitrogen atoms enhance roughness of N-graphene and decrease thermal conductivity.


Asunto(s)
Grafito/química , Nitrógeno/química , Simulación de Dinámica Molecular , Nanoestructuras/química , Temperatura , Conductividad Térmica
17.
ACS Appl Mater Interfaces ; 8(10): 6504-11, 2016 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-26923080

RESUMEN

In spite of extremely high piezoelectric and pyroelectric coefficients, there are few reports on flexible ferroelectric perovskite film based nanogenerators (NGs). Here, we report the successful growth of a flexible Pb(Zr0.52Ti0.48)O3 (PZT) film and its application to hybrid piezoelectric-pyroelectric NG. A highly flexible Ni-Cr metal foil substrate with a conductive LaNiO3 bottom electrode enables the growth of flexible PZT film having high piezoelectric (140 pC/N) and pyroelectric (50 nC/cm(2)K) coefficients at room temperature. The flexible PZT-based NG effectively scavenges mechanical vibration and thermal fluctuation from sources ranging from the human body to the surroundings such as wind. Furthermore, it stably generates electric current even at elevated temperatures of 100 °C, relative humidity of 70%, and pH of 13 by virtue of its high Curie temperature and strong resistance for water and base. As proof of power generation under harsh environments, we demonstrate the generation of extremely high current at the exhaust pipe of a car, where hot CO and CO2 gases are rapidly expelled to air. This work expands the application of flexible PZT film-based NG for the scavenging mechanical vibration and thermal fluctuation energies even at extreme conditions.

18.
J Comput Chem ; 37(14): 1283-95, 2016 May 30.
Artículo en Inglés | MEDLINE | ID: mdl-26927815

RESUMEN

Protein-nucleic acid complexes are important for many cellular processes including the most essential functions such as transcription and translation. For many protein-nucleic acid complexes, flexibility of both macromolecules has been shown to be critical for specificity and/or function. The flexibility-rigidity index (FRI) has been proposed as an accurate and efficient approach for protein flexibility analysis. In this article, we introduce FRI for the flexibility analysis of protein-nucleic acid complexes. We demonstrate that a multiscale strategy, which incorporates multiple kernels to capture various length scales in biomolecular collective motions, is able to significantly improve the state of art in the flexibility analysis of protein-nucleic acid complexes. We take the advantage of the high accuracy and O(N) computational complexity of our multiscale FRI method to investigate the flexibility of ribosomal subunits, which are difficult to analyze by alternative approaches. An anisotropic FRI approach, which involves localized Hessian matrices, is utilized to study the translocation dynamics in an RNA polymerase.


Asunto(s)
Ácidos Nucleicos/química , Proteínas/química , Algoritmos
19.
Artículo en Inglés | MEDLINE | ID: mdl-25645296

RESUMEN

Intense temperature change often leads to increased oxidative stress in many animals with a few exceptions, including the turtle. To date, little is known about the mechanism of protective antioxidative defenses in turtles during acute temperature change, specifically the role that the antioxidant ascorbic acid (AA) plays. In this study, Chinese soft-shelled turtles (Pelodiscus sinensis) were initially acclimated at 28°C (3 wks), exposed to acute cold condition (8°C, 8 h) and finally placed in recovery (28°C, 24 h). L-Gulonolactone oxidase (GLO) mRNA exhibited a stable transcription pattern during the intense thermal fluctuation. GLO activity also remained stable, which validated the mRNA expression pattern. The similar Q10 values for GLO activity in the different treatment groups at incubation temperatures of 28°C and 8°C indicated that the GLO activity response to thermal change exhibited a temperature-dependent enzymatic kinetic characteristic. The AA storage was tissue-specific as well as the AA re-supply in the recovery period, with brain as the priority. Despite the insufficient transport during cold exposure, the plasma AA reservoir greatly contributed to the redistribution of AA during recovery. Depending on the prominent GLO activity, the high level of tissue-specific AA storage and the extraordinary plasma AA transport potential, the Chinese soft-shelled turtle endured severe thermal fluctuations with no apparent oxidative stress. However, the significant decrease in AA concentration in the brain tissue during acute cold exposure suggested that such a strategy may not be sufficient for prolonged cold exposure.


Asunto(s)
Ácido Ascórbico/fisiología , Frío , Estrés Fisiológico , Tortugas/fisiología , Animales , Expresión Génica , L-Gulonolactona Oxidasa/genética , L-Gulonolactona Oxidasa/metabolismo , Estrés Oxidativo , ARN Mensajero/genética
20.
Exp Eye Res ; 120: 97-102, 2014 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-24457152

RESUMEN

In this paper we have studied the thermal fluctuation patterns occurring at the ocular surface of the left and right eyes for aqueous deficient dry eye (ADDE) patients and control subjects by thermal imaging. We conducted our experiment on 42 patients (84 eyes) with aqueous deficient dry eyes and compared with 36 healthy volunteers (72 eyes) without any history of ocular surface disorder. Schirmer's test, Tear Break-up Time, tear Meniscus height and fluorescein staining tests were conducted. Ocular surface temperature measurement was done, using an FL-IR thermal camera and thermal fluctuation in left and right eyes was calculated and analyzed using MATLAB. The time series containing the sum of squares of the temperature fluctuation on the ocular surface were compared for aqueous deficient dry eye and control subjects. Significant statistical difference between the fluctuation patterns for control and ADDE was observed (p < 0.001 at 95% confidence interval). Thermal fluctuations in left and right eyes are significantly correlated in controls but not in ADDE subjects. The possible origin of such correlation in control and lack of correlation in the ADDE subjects is discussed in the text.


Asunto(s)
Temperatura Corporal/fisiología , Técnicas de Diagnóstico Oftalmológico , Síndromes de Ojo Seco/diagnóstico , Enfermedades del Aparato Lagrimal/diagnóstico , Lágrimas/metabolismo , Termografía/métodos , Adulto , Síndromes de Ojo Seco/metabolismo , Femenino , Humanos , Rayos Infrarrojos , Enfermedades del Aparato Lagrimal/metabolismo , Masculino
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