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1.
Sci Rep ; 14(1): 16130, 2024 Jul 12.
Artículo en Inglés | MEDLINE | ID: mdl-38997398

RESUMEN

The mechanism of selectivity in ion channels is still an open question in biology. Recent studies suggest that the selectivity filter may exhibit quantum coherence, which could help explain how ions are selected and conducted. However, environmental noise causes decoherence and loss of quantum effects. It is hoped that the effect of classical noise on ion channels can be modeled using the framework provided by quantum decoherence theory. In this paper, the behavior of the ion channel system was simulated using two models: the Spin-Boson model and the stochastic Hamiltonian model under classical noise. Additionally, using a different approach, the system's evolution was modeled as a two-level Spin-Boson model with tunneling, interacting with a bath of harmonic oscillators, based on decoherence theory. We investigated under what conditions the decoherence model approaches and deviates from the noise model. Specifically, we examined Gaussian noise and Ornstein-Uhlenbeck noise in our model. Gaussian noise shows a very good agreement with the decoherence model. By examining the results, it was found that the Spin-Boson model at a high hopping rate of potassium ions can simulate the behavior of the system in the classical noise approach for Gaussian noise.

2.
Entropy (Basel) ; 25(2)2023 Jan 17.
Artículo en Inglés | MEDLINE | ID: mdl-36832554

RESUMEN

A spin-boson-like model with two interacting qubits is analysed. The model turns out to be exactly solvable since it is characterized by the exchange symmetry between the two spins. The explicit expressions of eigenstates and eigenenergies make it possible to analytically unveil the occurrence of first-order quantum phase transitions. The latter are physically relevant since they are characterized by abrupt changes in the two-spin subsystem concurrence, in the net spin magnetization and in the mean photon number.

3.
Entropy (Basel) ; 22(9)2020 Sep 18.
Artículo en Inglés | MEDLINE | ID: mdl-33286814

RESUMEN

We construct a microscopic model to study discrete randomness in bistable systems coupled to an environment comprising many degrees of freedom. A quartic double well is bilinearly coupled to a finite number N of harmonic oscillators. Solving the time-reversal invariant Hamiltonian equations of motion numerically, we show that for N=1, the system exhibits a transition with increasing coupling strength from integrable to chaotic motion, following the Kolmogorov-Arnol'd-Moser (KAM) scenario. Raising N to values of the order of 10 and higher, the dynamics crosses over to a quasi-relaxation, approaching either one of the stable equilibria at the two minima of the potential. We corroborate the irreversibility of this relaxation on other characteristic timescales of the system by recording the time dependences of autocorrelation, partial entropy, and the frequency of jumps between the wells as functions of N and other parameters. Preparing the central system in the unstable equilibrium at the top of the barrier and the bath in a random initial state drawn from a Gaussian distribution, symmetric under spatial reflection, we demonstrate that the decision whether to relax into the left or the right well is determined reproducibly by residual asymmetries in the initial positions and momenta of the bath oscillators. This result reconciles the randomness and spontaneous symmetry breaking of the asymptotic state with the conservation of entropy under canonical transformations and the manifest symmetry of potential and initial condition of the bistable system.

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