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Raoultella ornithinolytica PX02 is a Gram-negative, encapsulated bacterium, part of the Enterobacteriaceae family, emerging as a notable human pathogen. Here, we present the whole genome sequence of R. ornithinolytica PX02 isolated from San Jacinto River sediment near a Burnet Shores community in Baytown, Texas. This microorganism harbors a large 200,000 bp incF plasmid and can potentially be a significant antibiotic reservoir. The PX02 genome consists of 5,970,914 base pairs encoding approximately 5,661 functional proteins. Strain PX02 (chromosomal and plasmid) was compiled at the scaffold level and can be accessed through the National Center for Biotechnology Information database under accession NZ_NJBC00000000.1.

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Polychlorinated dibenzo-p-dioxins and dibenzofurans in the sediments of aquatic systems are a persistent global problem that poses serious health risks. Identifying the sources of dioxins in natural water systems and the extent of their contributions to observed sediment concentrations is important from a health advisory and mitigation perspective. This paper proposes novel distribution-based qualitative and quantitative methods as source apportionment techniques and alternatives to conventional source attribution methods. Using sampled data, air, runoff, industrial effluent, and industrial paper and pulp wastes were identified as four distinct dioxin contributors to concentrations found in the sediments of the test bed region: the Houston Ship Channel-San Jacinto River-Galveston Bay (HSC-SJR-GB) estuarine system that also includes 2 Superfund sites with dioxin contamination. Two qualitative methods, the Kullback-Leibler divergence (K-L divergence) and the Bhattacharya measure (BM), and a quantitative method, the L2 norm, were used to investigate the spatial and temporal sourcing patterns of dioxins in the system sediments. The results indicated a global contribution from air and runoff sources across the estuarine system and over time with more localized impacts of the Superfund sites and the industrial sources. The results using the developed methodologies were compared with the output from the more conventional positive matrix factorization (PMF) method. Statistically significant correlations were observed among source contributions from the proposed methods and the PMF method, with Spearman's ρ ranging between - 0.596 to - 0.963 and 0.652 to 0.719, demonstrating the utility of the sourcing approaches used in the study. Additionally, the proposed methods were found to be rigorous in terms of elucidating spatial and temporal changes in the sourcing of dioxin to the estuary, indicating their suitability for use for other contaminants and other estuarine systems.

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The landfall of Hurricane Harvey in August 2017 provided the opportunity to study the impact of extreme freshwater discharge on chromophoric dissolved organic matter (CDOM) properties in a subtropical estuary (Galveston Bay, Texas). Both fluorescence spectroscopy (excitation-emission matrices) and a three-component parallel factor analysis (PARAFAC) model identified changes in CDOM properties. Comparing to Coble's peaks, component 1 was similar to peak C, component 2 to peak M, and component 3 to peak B. Results clearly show three periods with distinct CDOM properties: a dry season, a wet season, and Hurricane Harvey. The dry season was characterized by higher values of the spectral slope and fluorescence and biological indices. The wet season was characterized by high values of PARAFAC components 1 and 2 (humic-like) and the absorption coefficient at 350 nm. Some CDOM components were highly correlated with salinity, indicating conservative mixing. Component 3 (protein-like) had a low correlation to salinity, suggesting degradation or production processes in the bay. Silicates and NO3- + NO2- had negative relationships with salinity and a positive one with PARAFAC components 1 and 2. PARAFAC component 3 was correlated with dissolved oxygen and chlorophyll a, suggesting a relationship between CDOM fluorescent components and phytoplankton activity. High values of the humification index were observed immediately after Hurricane Harvey, indicating increased input of terrestrial organic matter into the bay. Hurricane Harvey increased CDOM levels and humification, and the variability and changes seem to be mostly due to freshwater discharge from the San Jacinto River and not the Trinity River. The influx of freshwater was sufficient to eliminate the salinity gradient in Galveston Bay and significantly change CDOM properties. Galveston Bay recovered quickly from the hurricane and associated flux of freshwater, returning to pre-hurricane CDOM characteristics in less than 2 months.

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Hurricane Harvey (Harvey), a slow-moving storm, struck the Texas coast as a category 4 hurricane. Over the course of 53 days, the floodwaters of Harvey delivered 14 × 109 m3 of freshwater to Galveston Bay. This resulted in record flooding of Houston bayous and waterways, all of which drained into the San Jacinto Estuary (SJE,) with its main tributaries being Buffalo Bayou and the San Jacinto River. The lower SJE and lower Buffalo Bayou has experienced up to 3 m of land subsidence in the past 100 years and, as a result, prior to Hurricane Harvey, up to 2 m of sediment within the upper seabed contained an archive of high concentrations of Total Hg (HgT) and other particle-bound and porewater contaminants. Within the SJE, Harvey eroded at least 48 cm of the sediment column, resulting in the transport of an estimated 16.4 × 106 tons of sediment and at least 2 tons of Hg into Galveston Bay. This eroded sediment was replaced by a Harvey storm deposit of 7.73 × 106 tons of sediment and 0.96 tons within the SJE, mostly sourced from Buffalo Bayou. Considering that the frequency of slow-moving tropical cyclones capable of delivering devastating rainfall may be increasing, then one can expect that delivery of Hg and other contaminants from the archived sediment within urbanized estuaries will increase and that what happened during Harvey is a harbinger of what is to come.

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Several Eastern Harris County communities lie near the now enclosed San Jacinto River (SJR) Waste Pit Superfund, a dumping ground for chlorinated dioxins and other paper mill waste products. Currently, no active monitoring of the SJR is conducted for these toxins with the exact concentration and health impact to the area unknown. As such, remediation and monitoring efforts outside of the Superfund itself could be necessary. To better understand the possible environmental fate of these aromatics, here we provide a shotgun metagenomic analysis of the structural and putative functional diversity of the SJR microbiome from two impacted Channelview, Texas communities bordering the Superfund. Results show that the underlying SJR microbiome possesses a core of metabolic enzymes related to the ß-ketoadipate and benzoate degradation pathways. This suggests possible endpoints for many aromatics found deposited in the SJR including dioxin-like compounds. However, degradation biomarkers related to the priming and initial cleavage of chlorinated dioxin-like aromatics while present, are poorly concentrated across sampled sites. This may be due in part to decreased coverage of low abundance bacterial species, but also be a contributing factor leading to increased recalcitrance of these compounds in this environment compared to other aromatics.

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Stenotrophomonas maltophilia DF07 is a gram negative bacterium isolated from polluted San Jacinto River sediment near Moncrief Park in Channelview, Texas. The genome of strain DF07 (chromosome and plasmid) was compiled at the scaffold level and can be accessed through the National Center for Biotechnology Information database under accession NZ_NJGC00000000. The DF07 genome consists of a total of 4,801,842 bp encoding for approximately 4,351 functional proteins. Approximately 86 proteins are associated with broad-spectrum antibiotic resistance, 11 are associated with bacteriocin production, and a total of 17 proteins encode for an assortment of Mycobacterium-like virulence and invasion operons. S. maltophilia DF07 is genetically similar to the nosocomial S. maltophilia strain AU12-09, but also harbors an unusually large plasmid that encodes for over 150 proteins of unknown function. Taken together, this strain is potentially an important antibiotic reservoir and its origin within a recreational park merits further study of the area.

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The San Jacinto River (SJR) waste pits that lie just under the 1-10 overpass in eastern Harris County east of Houston, Texas, USA, were created in the 1960s as dumping grounds for paper mill waste. The deposition of this waste led to accumulation of highly toxic polychlorinated dibenzo-p-dioxins and dibenzofurans (PCCDDs/PCDFs) over the course of several decades. After abandonment, the waste material eventually became submerged under the waters of the SJR, resulting in widespread environmental contamination that currently constitutes a significant health concern for eastern Harris County communities. The original waste pits were rediscovered in 2005, and the San Jacinto waste site is now a designated EPA superfund site. The objective of this review then is to discuss the history and current state of containment around the San Jacinto waste pits and analyze spatial and temporal trends in the PCDD/PCDF deposition through the SJR system from the data available. We will discuss the current exposure and health risks represented by the Superfund site and the SJR system itself, as well as the discovery of liver, kidney, brain (glioma), and retinoblastoma cancer clusters in eastern Harris County across multiple census tracts that border the Superfund site. We will also cover the two primary management options, containment versus removal of the waste from the Superfund and provide recommendations for increased monitoring of existing concentrations of polychlorinated waste in the SJR and its nearby associated communities.

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