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This study aimed to investigate the Diaporthe species associated with Phomopsis stem canker of sunflower (Helianthus annuus L.) in Serbia. The significant increase in sunflower and soybean (Glycine max [L.] Merr.) cultivation may have created the bridge favorable conditions for the distribution of Diaporthe species in this region. The present study identified five Diaporthe species on sunflower: D. gulyae, D. helianthi, D. pseudolongicolla, D. stewartii, and the newly identified D. riccionae based on morphological, molecular, and pathogenic characteristics. The research emphasizes the importance of effective inoculation methods and evaluates the aggressiveness of isolates. Sunflower plants were inoculated using the stem wound method, while seeds of sunflower and soybean were inoculated using the standard seed method. Most of the tested isolates demonstrated high aggressiveness, resulting in more than 80% premature wilting of sunflower plants. Additionally, this research examined the aggressiveness of Diaporthe species on sunflower seeds, highlighting D. stewartii and D. pseudolongicolla as common pathogens of both sunflower and soybean. The most aggressive species on seeds was D. stewartii, causing seed decay of up to 100% in sunflower and 97% in soybean. The findings suggest the development of resilient sunflower genotypes through breeding programs and the implementation of strategies to manage cross-contamination risks between sunflower and soybean crops. Furthermore, this study provides insights into the interactions between Diaporthe species and the seeds of sunflower and soybean. Future research will enhance our understanding of the impact of Diaporthe species on sunflower and soybean.

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Phoma black stem (PBS), caused by Phoma macdonaldii Boerema (teleomorph Leptosphaeria lindquistii Frezzi), is the most common stem disease of sunflower (Helianthus annuus L.) in the northern Great Plains region of the United States. However, the impact of PBS on sunflower yield in the United States is unclear, and a near complete absence of information on the impact of fungicides on disease management exists. The objectives of this study were to determine the impact of PBS on sunflower yield, the efficacy of available fungicides, the optimal fungicide application timing, and the economic viability of fungicides as a management tool. Fungicide timing efficacy was evaluated by applying single and/or sequential applications of pyraclostrobin fungicide at three sunflower growth stages in 10 field trials between 2017 and 2019. Efficacy of 10 fungicides from the Fungicide Resistance Action Committee (FRAC) groups 3, 7, and 11 were evaluated in four field trials between 2018 and 2019. The impact of treatments on PBS were evaluated by determination of incidence, severity, maximum lesion height, disease severity index (DSI), and harvested yield. Nine of the 10 fungicides evaluated and all fungicide timings that included an early bud application resulted in disease reductions when compared with the nontreated controls. The DSI was negatively correlated to sunflower yield in high-yield environments (P = 0.0004; R2 = 0.3425) but not in low- or moderate-yield environments. Although FRAC 7 fungicides were generally most efficacious, the sufficient efficacy and lower cost of FRAC 11 fungicides make them more economically viable in high-yielding environments at current market conditions.

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Phomopsis stem canker reduces yield of sunflower (Helianthus annuus L.) up to or exceeding 40%; however, management recommendations have not been developed for U.S. farmers. Between 2009 and 2020, foliar fungicide trials were conducted in Minnesota, Nebraska, North Dakota, and South Dakota for a total of 49 location-years. Random effects meta-analyses were performed on the disease severity index (DSI) and yield data collected from the foliar fungicide trials to determine the overall and individual effectiveness of the tested fungicides. Effect sizes, Cohen's f or Hedges' g, were calculated as the difference in DSI or yield between the fungicide treatment and nontreated control (NTC) divided by the pooled SD. The pooled Cohen's f for DSI and yield was 0.40 (95% CI = [0.29, 0.42]), indicating a large effect size and that fungicide treatments had a significant effect on DSI and yield (P < 0.0001). Among the fungicide groups, quinone outside inhibitor (QoI) (DSI [k = 45; g = -0.47] and yield [k = 46; g = 0.41]) is moderately effective and premixes of demethylation inhibitors (DMI), succinate dehydrogenase inhibitors (SDHI), and QoI (DMI + SDHI + QoI) (DSI [k = 3; g = -0.79] and yield [k = 3; g = 0.94]) are largely effective in comparison with NTC. Upon performing prediction analyses, the probability of not recovering the fungicide application cost (Ploss) associated with QoI (pyraclostrobin) was <0.35 for a range of sunflower grain prices suggesting a greater probability of return on investment from a single application of fungicide. Overall, our study suggests that the use of QoI fungicides is likely to be profitable in the presence of Phomopsis stem canker (DSI > 5%).

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Phomopsis stem canker is economically important sunflower disease that caused by multiple Diaporthe species. Recent investigations resulted in the resolution that there are at least 13 Diaporthe species that can infect sunflower. A comprehensive analysis of the biodiversity and geographic distribution of Diaporthe species in Russia, particularly those that infect sunflower, has not been undertaken. For this study, 16 Diaporthe isolates were obtained from samples of stem canker and visually healthy seeds of Helianthus annuus from northwestern, central European, southern European Russia, North Caucasus, and the Urals in 2016-2019. The aim of this study was to identify these Diaporthe isolates based on morphology and sequence analyses of the nuclear ribosomal internal transcribed spacer (ITS) region, partial calmodulin (cal), DNA-lyase (apn2), histone H3 (his3), translation elongation factor-1α gene (tef1), and ß-tubulin (tub2) genes. The phylogenetic reconstruction revealed well-supported monophyletic clades corresponding to six Diaporthe species: D. eres, D. gulyae, D. helianthi, and D. phaseolorum. Two new species were described: Diaporthe monetii sp. nov. and Diaporthe vangoghii sp. nov. The isolates of D. gulyae and D. phaseolorum collected represent the first records of these species in Russia.

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Phomopsis stem canker (PSC) caused by Diaporthe helianthi is increasingly becoming a global threat for sunflower production. In this study, the genetic basis of PSC resistance was investigated in a recombinant inbred line (RIL) population developed from a cross between HA 89 (susceptible) and HA-R3 (resistant). The RIL population was evaluated for PSC disease incidence (DI) in seven screening trials at multiple locations during 2016-2018. The distribution of PSC DI in the RIL population was continuous, confirming a polygenic inheritance of the trait. A moderately high broad-sense heritability (H2, 0.76) was estimated for the trait across environments. In the combined analysis, both the genotype and the genotype × environment interactions were highly significant. A linkage map spanning 1505.33 cM was constructed using genotyping-by-sequencing derived markers. Marker-trait association analysis identified a total of 15 quantitative trait loci (QTL) associated with PSC resistance on 11 sunflower chromosomes, each explaining between 5.24 and 17.39% of the phenotypic variation. PSC resistance QTL were detected in two genomic regions each on chromosomes 3, 5, 13, and 17, while one QTL each was detected in the remaining seven chromosomes. Tightly linked single nucleotide polymorphism (SNP) markers flanking the PSC resistance QTL will facilitate marker-assisted selection in PSC resistance sunflower breeding.

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