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1.
Brief Bioinform ; 25(3)2024 Mar 27.
Artículo en Inglés | MEDLINE | ID: mdl-38706321

RESUMEN

Antiviral peptides (AVPs) have shown potential in inhibiting viral attachment, preventing viral fusion with host cells and disrupting viral replication due to their unique action mechanisms. They have now become a broad-spectrum, promising antiviral therapy. However, identifying effective AVPs is traditionally slow and costly. This study proposed a new two-stage computational framework for AVP identification. The first stage identifies AVPs from a wide range of peptides, and the second stage recognizes AVPs targeting specific families or viruses. This method integrates contrastive learning and multi-feature fusion strategy, focusing on sequence information and peptide characteristics, significantly enhancing predictive ability and interpretability. The evaluation results of the model show excellent performance, with accuracy of 0.9240 and Matthews correlation coefficient (MCC) score of 0.8482 on the non-AVP independent dataset, and accuracy of 0.9934 and MCC score of 0.9869 on the non-AMP independent dataset. Furthermore, our model can predict antiviral activities of AVPs against six key viral families (Coronaviridae, Retroviridae, Herpesviridae, Paramyxoviridae, Orthomyxoviridae, Flaviviridae) and eight viruses (FIV, HCV, HIV, HPIV3, HSV1, INFVA, RSV, SARS-CoV). Finally, to facilitate user accessibility, we built a user-friendly web interface deployed at https://awi.cuhk.edu.cn/∼dbAMP/AVP/.


Asunto(s)
Antivirales , Biología Computacional , Péptidos , Antivirales/farmacología , Péptidos/química , Biología Computacional/métodos , Humanos , Virus , Aprendizaje Automático , Algoritmos
2.
Comput Biol Med ; 173: 108353, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38520918

RESUMEN

The grading diagnosis of intracranial tumors is a key step in formulating clinical treatment plans and surgical guidelines. To effectively grade the diagnosis of intracranial tumors, this paper proposes a dual path parallel hierarchical model that can automatically grade the diagnosis of intracranial tumors with high accuracy. In this model, prior features of solid tumor mass and intratumoral necrosis are extracted. Then the optimal division of the data set is achieved through multi-feature entropy weight. The multi-modal input is realized by the dual path structure. Multiple features are superimposed and fused to achieve the image grading. The model has been tested on the actual clinical medical images provided by the Second Affiliated Hospital of Dalian Medical University. The experiment shows that the proposed model has good generalization ability, with an accuracy of 0.990. The proposed model can be applied to clinical diagnosis and has practical application prospects.


Asunto(s)
Neoplasias Encefálicas , Humanos , Entropía , Neoplasias Encefálicas/diagnóstico por imagen , Interpretación de Imagen Asistida por Computador/métodos
3.
Front Aging Neurosci ; 16: 1338755, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38486858

RESUMEN

Background: The primary imaging markers for idiopathic Normal Pressure Hydrocephalus (iNPH) emphasize morphological measurements within the ventricular system, with no attention given to alterations in brain parenchyma. This study aimed to investigate the potential effectiveness of combining ventricular morphometry and cortical structural measurements as diagnostic biomarkers for iNPH. Methods: A total of 57 iNPH patients and 55 age-matched healthy controls (HC) were recruited in this study. Firstly, manual measurements of ventricular morphology, including Evans Index (EI), z-Evans Index (z-EI), Cella Media Width (CMW), Callosal Angle (CA), and Callosal Height (CH), were conducted based on MRI scans. Cortical thickness measurements were obtained, and statistical analyses were performed using surface-based morphometric analysis. Secondly, three distinct models were developed using machine learning algorithms, each based on a different input feature: a ventricular morphology model (LVM), a cortical thickness model (CT), and a fusion model (All) incorporating both features. Model performances were assessed using 10-fold cross validation and tested on an independent dataset. Model interpretation utilized Shapley Additive Interpretation (SHAP), providing a visualization of the contribution of each variable in the predictive model. Finally, Spearman correlation coefficients were calculated to evaluate the relationship between imaging biomarkers and clinical symptoms. Results: iNPH patients exhibited notable differences in cortical thickness compared to HC. This included reduced thickness in the frontal, temporal, and cingulate cortices, along with increased thickness in the supracentral gyrus. The diagnostic performance of the fusion model (All) for iNPH surpassed that of the single-feature models, achieving an average accuracy of 90.43%, sensitivity of 90.00%, specificity of 90.91%, and Matthews correlation coefficient (MCC) of 81.03%. This improvement in accuracy (6.09%), sensitivity (11.67%), and MCC (11.25%) compared to the LVM strategy was significant. Shap analysis revealed the crucial role of cortical thickness in the right isthmus cingulate cortex, emerging as the most influential factor in distinguishing iNPH from HC. Additionally, significant correlations were observed between the typical triad symptoms of iNPH patients and cortical structural alterations. Conclusion: This study emphasizes the significant role of cortical structure changes in the diagnosis of iNPH, providing a novel insights for assisting clinicians in improving the identification and detection of iNPH.

4.
Accid Anal Prev ; 199: 107511, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38387154

RESUMEN

BACKGROUND: Monitoring of long-haul truck driver fatigue state has attracted considerable interest. Conventional fatigue driving detection methods based on the physiological and visual features are scarcely applicable, due to the intrusiveness, reliability, and cost-effectiveness concerns. METHODS: We elaborately developed a fatigue driving detection method by fusion of non-visual features derived from the customized wristbands, vehicle-mounted equipment, and trip logs. To capture the spatiotemporal information within the sequential data, the bidirectional long short-term memory network with attention mechanism was proposed to determine whether the truck driver was fatigued within a fine-grained episode of one minute. The model was validated using a natural driving dataset with nine truck drivers on real-world roads in Guiyang, China during June and July 2021. RESULTS: Our approach yielded 99.21 %, 84.44 %, 82.01 %, 99.63 %, and 83.21 % in accuracy, precision, recall, specificity, and F1-score, respectively. Compared with the mainstream visual-based methods, our approach outperformed particularly in terms of precision and recall. Photoplethysmogram stood out as the most important feature for truck driver fatigue state detection. Vehicle load, driving forward angle, cumulative driving time, midnight, and recent working hours were found to be positively associated with the probability of fatigue driving, while the galvanic skin response, vehicle acceleration, current time, and recent rest hours had a negative relationship. Specifically, truck drivers were more likely to fatigue when driving at 20-40 km/h, braking abruptly at 5-10 m/s2, with vehicle loads over 70 tons, and driving more than 100 min consecutively. CONCLUSIONS: Our study is among the first to harness the natural driving dataset to delve into the real-life fatigue pattern of long-haul truck drivers without disruptions on routine driving tasks. The proposed method holds pragmatic prospects by providing a privacy-preserving, robust, real-time, and non-intrusive technical pathway for truck driver fatigue monitoring.


Asunto(s)
Conducción de Automóvil , Vehículos a Motor , Humanos , Accidentes de Tránsito , Reproducibilidad de los Resultados , Conductores de Camiones , China
5.
Sensors (Basel) ; 24(3)2024 Jan 25.
Artículo en Inglés | MEDLINE | ID: mdl-38339501

RESUMEN

With the increasing demand for natural interactions, people have realized that an intuitive Computer-Aided Design (CAD) interaction mode can reduce the complexity of CAD operation and improve the design experience. Although interaction modes like gaze and gesture are compatible with some complex CAD manipulations, they still require people to express their design intentions physically. The brain contains design intentions implicitly and controls the corresponding body parts that execute the task. Therefore, building an end-to-end channel between the brain and computer as an auxiliary mode for CAD manipulation will allow people to send design intentions mentally and make their interaction more intuitive. This work focuses on the 1-D translation scene and studies a spatial visual imagery (SVI) paradigm to provide theoretical support for building an electroencephalograph (EEG)-based brain-computer interface (BCI) for CAD manipulation. Based on the analysis of three spatial EEG features related to SVI (e.g., common spatial patterns, cross-correlation, and coherence), a multi-feature fusion-based discrimination model was built for SVI. The average accuracy of the intent discrimination of 10 subjects was 86%, and the highest accuracy was 93%. The method proposed was verified to be feasible for discriminating the intentions of CAD object translation with good classification performance. This work further proves the potential of BCI in natural CAD manipulation.


Asunto(s)
Interfaces Cerebro-Computador , Humanos , Electroencefalografía/métodos , Encéfalo , Imágenes en Psicoterapia , Cabeza , Algoritmos
6.
Sensors (Basel) ; 24(2)2024 Jan 05.
Artículo en Inglés | MEDLINE | ID: mdl-38257406

RESUMEN

To improve the classification of pig vocalization using vocal signals and improve recognition accuracy, a pig vocalization classification method based on multi-feature fusion is proposed in this study. With the typical vocalization of pigs in large-scale breeding houses as the research object, short-time energy, frequency centroid, formant frequency and first-order difference, and Mel frequency cepstral coefficient and first-order difference were extracted as the fusion features. These fusion features were improved using principal component analysis. A pig vocalization classification model with a BP neural network optimized based on the genetic algorithm was constructed. The results showed that using the improved features to recognize pig grunting, squealing, and coughing, the average recognition accuracy was 93.2%; the recognition precisions were 87.9%, 98.1%, and 92.7%, respectively, with an average of 92.9%; and the recognition recalls were 92.0%, 99.1%, and 87.4%, respectively, with an average of 92.8%, which indicated that the proposed pig vocalization classification method had good recognition precision and recall, and could provide a reference for pig vocalization information feedback and automatic recognition.


Asunto(s)
Tos , Reconocimiento en Psicología , Porcinos , Animales , Redes Neurales de la Computación , Análisis de Componente Principal
7.
Sensors (Basel) ; 24(2)2024 Jan 18.
Artículo en Inglés | MEDLINE | ID: mdl-38257708

RESUMEN

Vehicle re-identification holds great significance for intelligent transportation and public safety. Extracting vehicle recognition information from multi-view vehicle images has become one of the challenging problems in the field of vehicle recognition. Most recent methods employ a single network extraction structure, either a single global or local measure. However, for vehicle images with high intra-class variance and low inter-class variance, exploring globally invariant features and discriminative local details is necessary. In this paper, we propose a Feature Fusion Network (GLFNet) that combines global and local information. It utilizes global features to enhance the differences between vehicles and employs local features to compactly represent vehicles of the same type. This enables the model to learn features with a large inter-class distance and small intra-class distance, significantly improving the model's generalization ability. Experiments show that the proposed method is competitive with other advanced algorithms on three mainstream road traffic surveillance vehicle re-identification benchmark datasets.

8.
Artículo en Chino | WPRIM (Pacífico Occidental) | ID: wpr-1031682

RESUMEN

@#Objective To propose a heart sound segmentation method based on multi-feature fusion network. Methods Data were obtained from the CinC/PhysioNet 2016 Challenge dataset (a total of 3 153 recordings from 764 patients, about 91.93% of whom were male, with an average age of 30.36 years). Firstly the features were extracted in time domain and time-frequency domain respectively, and reduced redundant features by feature dimensionality reduction. Then, we selected optimal features separately from the two feature spaces that performed best through feature selection. Next, the multi-feature fusion was completed through multi-scale dilated convolution, cooperative fusion, and channel attention mechanism. Finally, the fused features were fed into a bidirectional gated recurrent unit (BiGRU) network to heart sound segmentation results. Results The proposed method achieved precision, recall and F1 score of 96.70%, 96.99%, and 96.84% respectively. Conclusion The multi-feature fusion network proposed in this study has better heart sound segmentation performance, which can provide high-accuracy heart sound segmentation technology support for the design of automatic analysis of heart diseases based on heart sounds.

9.
Brain Res Bull ; 206: 110848, 2024 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-38104673

RESUMEN

Schizophrenia classification and abnormal brain network recognition have an important research significance. Researchers have proposed many classification methods based on machine learning and deep learning. However, fewer studies utilized the advantages of complementary information from multi feature to learn the best representation of schizophrenia. In this study, we proposed a multi-feature fusion network (MFFN) using functional network connectivity (FNC) and time courses (TC) to distinguish schizophrenia patients from healthy controls. DNN backbone was adopted to learn the feature map of functional network connectivity, C-RNNAM backbone was designed to learn the feature map of time courses, and Deep SHAP was applied to obtain the most discriminative brain networks. We proved the effectiveness of this proposed model using the combining two public datasets and evaluated this model quantitatively using the evaluation indexes. The results showed that the functional network connectivity generated by independent component analysis has advantage in schizophrenia classification by comparing static and dynamic functional connections. This method obtained the best classification accuracy (ACC=87.30%, SPE=89.28%, SEN=85.71%, F1 =88.23%, and AUC=0.9081), and it demonstrated the superiority of this proposed model by comparing state-of-the-art methods. Ablation experiment also demonstrated that multi feature fusion and attention module can improve classification accuracy. The most discriminative brain networks showed that default mode network and visual network of schizophrenia patients have aberrant connections in brain networks. In conclusion, this method can identify schizophrenia effectively and visualize the abnormal brain network, and it has important clinical application value.


Asunto(s)
Esquizofrenia , Humanos , Esquizofrenia/diagnóstico , Imagen por Resonancia Magnética/métodos , Encéfalo , Mapeo Encefálico/métodos , Reconocimiento en Psicología
10.
Sensors (Basel) ; 23(23)2023 Nov 22.
Artículo en Inglés | MEDLINE | ID: mdl-38067714

RESUMEN

Online handwritten signature verification is a crucial direction of research in the field of biometric recognition. Recently, many studies concerning online signature verification have attempted to improve performance using multi-feature fusion. However, few studies have provided the rationale for selecting a certain uni-feature to be fused, and few studies have investigated the contributions of a certain uni-feature in the multi-feature fusion process. This lack of research makes it challenging for future researchers in related fields to gain inspiration. Therefore, we use the uni-feature as the research object. In this paper, the uni-feature is one of the X and Y coordinates of the signature trajectory point, pen pressure, pen tilt, and pen azimuth feature. Aiming to solve the unequal length of feature vectors and the low accuracy of signature verification when using uni-features, we innovatively introduced the idea of correlation analysis and proposed a dynamic signature verification method based on the correlation coefficient of uni-features. Firstly, an alignment method of two feature vector lengths was proposed. Secondly, the correlation coefficient calculation formula was determined by analyzing the distribution type of the feature data, and then the correlation coefficient of the same uni-feature between the genuine signatures or between the genuine and forged signatures was calculated. Finally, the signature was verified by introducing a Gaussian density function model and combining it with the signature verification discrimination threshold. Experimental results showed that the proposed method could improve the performance of dynamic signature verification based on uni-features. In addition, the pen pressure feature had the best signature verification performance, with the highest signature verification accuracy of 93.46% on the SVC 2004 dataset.

11.
Math Biosci Eng ; 20(9): 16148-16168, 2023 Aug 09.
Artículo en Inglés | MEDLINE | ID: mdl-37920007

RESUMEN

Aerial image target detection technology has essential application value in navigation security, traffic control and environmental monitoring. Compared with natural scene images, the background of aerial images is more complex, and there are more small targets, which puts higher requirements on the detection accuracy and real-time performance of the algorithm. To further improve the detection accuracy of lightweight networks for small targets in aerial images, we propose a cross-scale multi-feature fusion target detection method (CMF-YOLOv5s) for aerial images. Based on the original YOLOv5s, a bidirectional cross-scale feature fusion sub-network (BsNet) is constructed, using a newly designed multi-scale fusion module (MFF) and cross-scale feature fusion strategy to enhance the algorithm's ability, that fuses multi-scale feature information and reduces the loss of small target feature information. To improve the problem of the high leakage detection rate of small targets in aerial images, we constructed a multi-scale detection head containing four outputs to improve the network's ability to perceive small targets. To enhance the network's recognition rate of small target samples, we improve the K-means algorithm by introducing a genetic algorithm to optimize the prediction frame size to generate anchor boxes more suitable for aerial images. The experimental results show that on the aerial image small target dataset VisDrone-2019, the proposed method can detect more small targets in aerial images with complex backgrounds. With a detection speed of 116 FPS, compared with the original algorithm, the detection accuracy metrics mAP0.5 and mAP0.5:0.95 for small targets are improved by 5.5% and 3.6%, respectively. Meanwhile, compared with eight advanced lightweight networks such as YOLOv7-Tiny and PP-PicoDet-s, mAP0.5 improves by more than 3.3%, and mAP0.5:0.95 improves by more than 1.9%.

12.
Health Inf Sci Syst ; 11(1): 55, 2023 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-37981988

RESUMEN

Essential proteins play a vital role in development and reproduction of cells. The identification of essential proteins helps to understand the basic survival of cells. Due to time-consuming, costly and inefficient with biological experimental methods for discovering essential proteins, computational methods have gained increasing attention. In the initial stage, essential proteins are mainly identified by the centralities based on protein-protein interaction (PPI) networks, which limit their identification rate due to many false positives in PPI networks. In this study, a purified PPI network is firstly introduced to reduce the impact of false positives in the PPI network. Secondly, by analyzing the similarity relationship between a protein and its neighbors in the PPI network, a new centrality called neighborhood similarity centrality (NSC) is proposed. Thirdly, based on the subcellular localization and orthologous data, the protein subcellular localization score and ortholog score are calculated, respectively. Fourthly, by analyzing a large number of methods based on multi-feature fusion, it is found that there is a special relationship among features, which is called dominance relationship, then, a novel model based on dominance relationship is proposed. Finally, NSC, subcellular localization score, and ortholog score are fused by the dominance relationship model, and a new method called NSO is proposed. In order to verify the performance of NSO, the seven representative methods (ION, NCCO, E_POC, SON, JDC, PeC, WDC) are compared on yeast datasets. The experimental results show that the NSO method has higher identification rate than other methods.

13.
Front Genet ; 14: 1294159, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37928245

RESUMEN

Allergy is an autoimmune disorder described as an undesirable response of the immune system to typically innocuous substance in the environment. Studies have shown that the ability of proteins to trigger allergic reactions in susceptible individuals can be evaluated by bioinformatics tools. However, developing computational methods to accurately identify new allergenic proteins remains a vital challenge. This work aims to propose a machine learning model based on multi-feature fusion for predicting allergenic proteins efficiently. Firstly, we prepared a benchmark dataset of allergenic and non-allergenic protein sequences and pretested on it with a machine-learning platform. Then, three preferable feature extraction methods, including amino acid composition (AAC), dipeptide composition (DPC) and composition of k-spaced amino acid pairs (CKSAAP) were chosen to extract protein sequence features. Subsequently, these features were fused and optimized by Pearson correlation coefficient (PCC) and principal component analysis (PCA). Finally, the most representative features were picked out to build the optimal predictor based on random forest (RF) algorithm. Performance evaluation results via 5-fold cross-validation showed that the final model, called iAller (https://github.com/laihongyan/iAller), could precisely distinguish allergenic proteins from non-allergenic proteins. The prediction accuracy and AUC value for validation dataset achieved 91.4% and 0.97%, respectively. This model will provide guide for users to identify more allergenic proteins.

14.
Comput Methods Programs Biomed ; 240: 107702, 2023 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-37531689

RESUMEN

BACKGROUND AND OBJECTIVE: Depression can severely impact physical and mental health and may even harm society. Therefore, detecting the early symptoms of depression and treating them on time is critical. The widespread use of social media has led individuals with depressive tendencies to express their emotions on social platforms, share their painful experiences, and seek support and help. Therefore, the massive available amounts of social platform data provide the possibility of identifying depressive tendencies. METHODS: This paper proposes a neural network hybrid model MTDD to achieve this goal. Analysis of the content of users' posts on social platforms has facilitated constructing a post-level method to detect depressive tendencies in individuals. Compared with existing methods, the MTDD model uses the following innovative methods: First, this model is based on social platform data, which is objective and accurate, can be obtained at a low cost, and is easy to operate. The model can avoid the influence of subjective factors in the depressive tendency detection method based on consultation with mental health experts. In other words, it can avoid the problem of undisclosed and imperfect data in depressive tendency detection. Second, the MTDD model is based on a deep neural network hybrid model, combining the advantages of CNN and BiLSTM networks and avoiding the problem of poor generalization ability in a single model for depression tendency recognition. Third, the MTDD model is based on multimodal features for learning the vector representation of depression-prone text, including text features, semantic features, and domain knowledge, making the model more robust. RESULTS: Extensive experimental results demonstrate that our MTDD model detects users who may have a depressive tendency with a 95% F1 value and obtained SOTA results. CONCLUSIONS: Our MTDD model can detect depressive users on social media platforms more effectively, providing the possibility for early diagnosis and timely treatment of depression. The experiment proves that our MTDD model outperforms many of the latest depressive tendency detection models.


Asunto(s)
Depresión , Medios de Comunicación Sociales , Humanos , Depresión/diagnóstico , Emociones , Semántica , Salud Mental
15.
Comput Biol Med ; 164: 107094, 2023 09.
Artículo en Inglés | MEDLINE | ID: mdl-37459792

RESUMEN

In recent years, research in the field of bioinformatics has focused on predicting the raw sequences of proteins, and some scholars consider DNA-binding protein prediction as a classification task. Many statistical and machine learning-based methods have been widely used in DNA-binding proteins research. The aforementioned methods are indeed more efficient than those based on manual classification, but there is still room for improvement in terms of prediction accuracy and speed. In this study, researchers used Average Blocks, Discrete Cosine Transform, Discrete Wavelet Transform, Global encoding, Normalized Moreau-Broto Autocorrelation and Pseudo position-specific scoring matrix to extract evolutionary features. A dynamic deep network based on lifelong learning architecture was then proposed in order to fuse six features and thus allow for more efficient classification of DNA-binding proteins. The multi-feature fusion allows for a more accurate description of the desired protein information than single features. This model offers a fresh perspective on the dichotomous classification problem in bioinformatics and broadens the application field of lifelong learning. The researchers ran trials on three datasets and contrasted them with other classification techniques to show the model's effectiveness in this study. The findings demonstrated that the model used in this research was superior to other approaches in terms of single-sample specificity (81.0%, 83.0%) and single-sample sensitivity (82.4%, 90.7%), and achieves high accuracy on the benchmark dataset (88.4%, 80.0%, and 76.6%).


Asunto(s)
Proteínas de Unión al ADN , Aprendizaje Automático , Unión Proteica , Proteínas de Unión al ADN/metabolismo , Biología Computacional/métodos , ADN
16.
Entropy (Basel) ; 25(6)2023 May 25.
Artículo en Inglés | MEDLINE | ID: mdl-37372191

RESUMEN

Tibetan medicinal materials play a significant role in Tibetan culture. However, some types of Tibetan medicinal materials share similar shapes and colors, but possess different medicinal properties and functions. The incorrect use of such medicinal materials may lead to poisoning, delayed treatment, and potentially severe consequences for patients. Historically, the identification of ellipsoid-like herbaceous Tibetan medicinal materials has relied on manual identification methods, including observation, touching, tasting, and nasal smell, which heavily rely on the technicians' accumulated experience and are prone to errors. In this paper, we propose an image-recognition method for ellipsoid-like herbaceous Tibetan medicinal materials that combines texture feature extraction and a deep-learning network. We created an image dataset consisting of 3200 images of 18 types of ellipsoid-like Tibetan medicinal materials. Due to the complex background and high similarity in the shape and color of the ellipsoid-like herbaceous Tibetan medicinal materials in the images, we conducted a multi-feature fusion experiment on the shape, color, and texture features of these materials. To leverage the importance of texture features, we utilized an improved LBP (local binary pattern) algorithm to encode the texture features extracted by the Gabor algorithm. We inputted the final features into the DenseNet network to recognize the images of the ellipsoid-like herbaceous Tibetan medicinal materials. Our approach focuses on extracting important texture information while ignoring irrelevant information such as background clutter to eliminate interference and improve recognition performance. The experimental results show that our proposed method achieved a recognition accuracy of 93.67% on the original dataset and 95.11% on the augmented dataset. In conclusion, our proposed method could aid in the identification and authentication of ellipsoid-like herbaceous Tibetan medicinal materials, reducing errors and ensuring the safe use of Tibetan medicinal materials in healthcare.

17.
Sheng Wu Yi Xue Gong Cheng Xue Za Zhi ; 40(3): 450-457, 2023 Jun 25.
Artículo en Chino | MEDLINE | ID: mdl-37380383

RESUMEN

The recurrent neural network architecture improves the processing ability of time-series data. However, issues such as exploding gradients and poor feature extraction limit its application in the automatic diagnosis of mild cognitive impairment (MCI). This paper proposed a research approach for building an MCI diagnostic model using a Bayesian-optimized bidirectional long short-term memory network (BO-BiLSTM) to address this problem. The diagnostic model was based on a Bayesian algorithm and combined prior distribution and posterior probability results to optimize the BO-BiLSTM network hyperparameters. It also used multiple feature quantities that fully reflected the cognitive state of the MCI brain, such as power spectral density, fuzzy entropy, and multifractal spectrum, as the input of the diagnostic model to achieve automatic MCI diagnosis. The results showed that the feature-fused Bayesian-optimized BiLSTM network model achieved an MCI diagnostic accuracy of 98.64% and effectively completed the diagnostic assessment of MCI. In conclusion, based on this optimization, the long short-term neural network model has achieved automatic diagnostic assessment of MCI, providing a new diagnostic model for intelligent diagnosis of MCI.


Asunto(s)
Disfunción Cognitiva , Redes Neurales de la Computación , Humanos , Teorema de Bayes , Algoritmos , Encéfalo , Disfunción Cognitiva/diagnóstico
18.
Front Pharmacol ; 14: 1205144, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37284317

RESUMEN

Introduction: Exploring the potential efficacy of a drug is a valid approach for drug development with shorter development times and lower costs. Recently, several computational drug repositioning methods have been introduced to learn multi-features for potential association prediction. However, fully leveraging the vast amount of information in the scientific literature to enhance drug-disease association prediction is a great challenge. Methods: We constructed a drug-disease association prediction method called Literature Based Multi-Feature Fusion (LBMFF), which effectively integrated known drugs, diseases, side effects and target associations from public databases as well as literature semantic features. Specifically, a pre-training and fine-tuning BERT model was introduced to extract literature semantic information for similarity assessment. Then, we revealed drug and disease embeddings from the constructed fusion similarity matrix by a graph convolutional network with an attention mechanism. Results: LBMFF achieved superior performance in drug-disease association prediction with an AUC value of 0.8818 and an AUPR value of 0.5916. Discussion: LBMFF achieved relative improvements of 31.67% and 16.09%, respectively, over the second-best results, compared to single feature methods and seven existing state-of-the-art prediction methods on the same test datasets. Meanwhile, case studies have verified that LBMFF can discover new associations to accelerate drug development. The proposed benchmark dataset and source code are available at: https://github.com/kang-hongyu/LBMFF.

19.
Environ Sci Pollut Res Int ; 30(34): 82818-82833, 2023 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-37335513

RESUMEN

The accurate prediction of dissolved oxygen concentration is crucial for the effective prevention and control of water pollution. A spatiotemporal prediction model for dissolved oxygen content that is suitable for missing data is proposed in this study. The model utilizes a module based on neural controlled differential equations (NCDEs) to handle missing data and graph attention networks (GATs) to capture the spatiotemporal relationship of dissolved oxygen content. To enhance the performance of model, it is optimized from three aspects: an iterative optimization method based on the k-nearest neighbor graph is proposed to enhance the quality of graph; Shapley additive explanations model (SHAP) is used to select the main features into model, enabling it to handle multiple features; and a fusion graph attention mechanism is introduced to improve the robustness of model to noise. The model is evaluated using data from water quality monitoring sites in Hunan Province, China, from January 14, 2021, to June 16, 2022. The proposed model outperforms other models in long-term prediction (step = 18), with MAE of 0.194, NSE of 0.914, RAE of 0.219, and IA of 0.977. The results demonstrate that constructing appropriate spatial dependencies can enhance the accuracy of dissolved oxygen prediction models, and the NCDE module confers robustness to missing data in the model.


Asunto(s)
Oxígeno , Contaminación del Agua , China , Análisis por Conglomerados , Calidad del Agua
20.
Front Neurosci ; 17: 1182388, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37152605

RESUMEN

Purpose: Cataract is one of the leading causes of blindness worldwide, accounting for >50% of cases of blindness in low- and middle-income countries. In this study, two artificial intelligence (AI) diagnosis platforms are proposed for cortical cataract staging to achieve a precise diagnosis. Methods: A total of 647 high quality anterior segment images, which included the four stages of cataracts, were collected into the dataset. They were divided randomly into a training set and a test set using a stratified random-allocation technique at a ratio of 8:2. Then, after automatic or manual segmentation of the lens area of the cataract, the deep transform-learning (DTL) features extraction, PCA dimensionality reduction, multi-features fusion, fusion features selection, and classification models establishment, the automatic and manual segmentation DTL platforms were developed. Finally, the accuracy, confusion matrix, and area under the receiver operating characteristic (ROC) curve (AUC) were used to evaluate the performance of the two platforms. Results: In the automatic segmentation DTL platform, the accuracy of the model in the training and test sets was 94.59 and 84.50%, respectively. In the manual segmentation DTL platform, the accuracy of the model in the training and test sets was 97.48 and 90.00%, respectively. In the test set, the micro and macro average AUCs of the two platforms reached >95% and the AUC for each classification was >90%. The results of a confusion matrix showed that all stages, except for mature, had a high recognition rate. Conclusion: Two AI diagnosis platforms were proposed for cortical cataract staging. The resulting automatic segmentation platform can stage cataracts more quickly, whereas the resulting manual segmentation platform can stage cataracts more accurately.

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