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The seabed desertification has increasingly highlighted the importance of benthic habitat restoration. Strategically engineered artificial reefs emerges as pivotal in achieving restoration objectives. However, the significant influence of foundation species on biotic components and ecosystem attributes within diverse artificial reefs has been underrecognized. This study collated twenty Ecopath models of artificial reefs and their corresponding natural control ecosystems along the coasts of the Yellow Sea and Bohai Sea, China, categorizing them into five distinct system types predicated on the biomass and productivity of foundational species. Our results suggest that dimensionless indices, rather than actual system values, were posited to facilitate inter-comparative analysis. The comparative analysis revealed differences in biomass distribution, energy utilization, and trophic structure across the five ecosystem types. All the artificial reef systems collectively enhanced the utilization of primary production. Foundation species components formed the cornerstone of system functionality, significantly impacting ecosystem stability through modulation of energy flow dynamics. Distinct impacts were observed from shellfish and macroalgae; the former augmenting the detrital food chain, while the latter bolstering the grazing food chain. Consequently, the model-based integrated analysis enabled a robust comparison among various types of artificial reef ecosystems and confirmed that promoting the colonization of foundation species was a non-negligible factor in the design and deployment of artificial reefs.

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The Ria de Aveiro is an important coastal lagoon for wildlife in Portugal, where the production of bivalves reaches approximately 2700 tons annually. However, the illegal overfishing of bivalves is frequent in this lagoon, which causes critical changes in the ecosystem. In this study, using a developed food-web model (Ecopath model), the ecological carrying capacity (ECC) and maximum sustained yield (MSY) of the Manila clam, Ruditapes philippinarum were estimated, and the effects of further increases in clam biomass on other species were investigated. The results showed that 1) the current biomass and legal catch of R. philippinarum do not yet exceed the ECC (172.40 tons km-2) or the MSY (86.20 tons km-2 year-1) in Ria de Aveiro; 2) the harvested Manila clams of the MSY represent removing from the ecosystem âˆ¼ 581 tons carbon (C) and ∼83 tons nitrogen (N) annually, with substantial ecological and economic implications; and 3) a further increase in the biomass levels of this species may cause the ecotrophic efficiency of other groups to become unrealistic, potentially leading to decreases in ecosystem transfer efficiency, biodiversity and health. The results here are expected to guide the sustainable development and management of bivalve aquaculture in Ria de Aveiro and the protection of the local environment.

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An integrated multi-trophic aquaculture system (IMTA) combined muti-trophic organism cultivation with ecological engineering facilities effectively improves energy utilization efficiency and reduces pollution emission, which promotes the development of the aquaculture industry. In this study, an Ecopath model was used to analyze the Pelteobagrus fulvidraco-integrated multi-trophic aquaculture system (FMRP). The results showed that the effective trophic level range of FMRP was low (1~2.566), and the energy throughput was mainly concentrated in trophic level I (65.39%). The utilization rate of commercial fish feed was high. Due to the lack of predators for detritus and primary producers (Oryza sativa L. and hydrophyte), the energy throughput of detritus and the primary production were not fully utilized. The ascendency/total development capacity (A/TDC) and overhead/total development capacity (O/TDC) were 0.29 and 0.59, respectively, which indicated that the aquaculture system had high elasticity and strong anti-perturbation ability, but the stability could be substantially improved. The results of the carrying capacity assessment showed that the maximal single increments of Pelteobagrus fulvidraco fry and juvenile were 0.12 g/m2 and 0.42 g/m2, respectively, and the maximal common increments of Pelteobagrus fulvidraco fry and juvenile were 0.10 g/m2 and 0.10 g/m2, respectively, which indicated that there was insufficient space for increment. The study showed that the FMRP still needed to be improved in the aspects of polyculture species, energy consumption and stability. It would be necessary for the FMRP to perform further optimization and enhancement on the energy utilization efficiency, system stability and comprehensive benefits.

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Ecosystem structure determines material circulation, energy flow, and system function. Based on field investigation data in the Sanmen Bay, East China Sea from 2017 to 2018, ecological channel model was constructed by Ecopath, describing energy flow routes and functional characteristics of the Sanmen Bay ecosystem. Results showed that grazing food chain was the main energy circulation channel, and the trophic level of each functional group ranged from 1 to 3.80. Energy flow of the system was mainly concentrated in the first five levels, with an average energy conversion efficiency of 13.0%. Energy conversion efficiency was 12.8% and 14.5% from primary producers and debris, respectively. Connectance index (CI) and system omnivory index (SOI) were 0.40 and 0.24 respectively. Finn's cycling index (FIC) was 0.40, and Finn's mean path length (MPL) was 2.06. The ratio of total primary productivity to total respiration was 13.59. In conclusion, Sanmen Bay ecosystem was immature in material circulation and energy flow. This work is helpful to understand the structural and functional traits of coastal ecosystems in China.

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The paper evaluates the species richness, material transfer, energy flow, and system function of the southwestern Yellow Sea Ecosystem (SYSE) indicating intensive human intervention affecting this large marine ecosystem. Twenty functional groups were chosen to represent the basic components of the SYSE for Ecopath modeling based on offshore surveys, annual bird observations, and the China Fisheries Statistical Yearbooks. Forty-nine species based on 15 functional groups of Ecopath model were assessed by stable isotopic analysis (SIA) to verify ecosystem features, energy flow, and trophic structure of the SYSE derived from Ecopath model. Results showed there was a clear correlation of the estimated trophic structure calculated from SIA and the Ecopath model with R2=0.7184. The SYSE Ecopath model was still at an immature and unstable stage according to outputs of the modeling parameters. This paper provides a verification method of detecting the ecosystem features and maturity, stability, and resilience of marine ecosystems by comparing outputs from Ecopath models with SIA.

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Mediterranean coastal ecosystems provide various valuable ecosystem goods and services; however, they are vulnerable to ecological degradation due to a dramatic increase in resource use and environmental stress. Disentangling the effects of multiple human interventions on coastal ecosystems requires whole description of food web interactions using quantitative tools. A mass balance Ecopath model has been developed here for Saronikos Gulf, a naturally oligotrophic Mediterranean coastal ecosystem with a long history of human interventions. Our main focus was to describe the structure and functioning of the ecosystem, investigate the trophic interplay among the various compartments of the food web under the impact of mixed multi-gear fisheries, and to quantify resilience related emergent ecosystem properties. To this end, we reviewed a large amount of local and regional biological information which was integrated in 40 functional groups covering all trophic levels, while fishing activities were described with 7 fleets. The model shared characteristics of both productive (e.g., high amount of flows) and oligotrophic systems (e.g., low biomass accumulation) and presented typical features of Mediterranean ecosystem functioning, such as the importance of detritus as an energy source, strong benthic-pelagic coupling and the dominance of the pelagic compartment in terms of total production and consumption. Trophic forcing in the ecosystem of Saronikos Gulf was complex with both top-down and bottom-up drivers being important. Zooplankton was the central nexus between basal resources and higher trophic levels, while top predators such as hake, squids and anglerfish were identified as keystone species presenting a significant overall effect on the food web via direct and indirect trophic interactions. Ecological indicators depicted a moderately complex food-web of a large and immature ecosystem with its strengths in reserve being affected by environmental degradation. Additionally, exploitation indices classified fishing activities in Saronikos Gulf as unsustainable, affecting several target groups, including high trophic level species. However, the morphological and bathymetric complexity of Saronikos Gulf seems to function as a natural ecological reserve for the ecosystem by providing nursery grounds to various species (e.g., hake, small pelagic fishes) and supporting important fish stocks for local fisheries.

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The ecosystem functioning of two marine food webs covering the north-eastern (Salento) and south-western (Calabria) sectors of the North-Western Ionian Sea (NWIS) (Central Mediterranean Sea) was investigated through a food-web model. Data inputs covered a wide set of ecological information applied to 58 functional groups (FGs). The sum of consumption and the mean predation mortality rate were calculated for benthic, demersal, and pelagic subsystems indicating the predator and prey roles of the FGs. A complex system of energy and biomass exchanges characterized the investigated food webs indicating an important benthic-pelagic coupling. In the food webs of both areas, the regulation of flows between the benthic-pelagic coupling seems to occur through the benthopelagic shrimps and the small pelagics due to their wasp-waist control role. Differences were observed concerning the top predators. Odontocetes play this keystone role in the Salento food web. Anglers, bathyal squids, and sharks assume this functional role in Calabria. The geomorphology and hydrography in the NWIS could affect the biomass and energy exchanges in this coupling. The higher flows of consumption of the benthic system observed in the Calabria food web could be influenced by a widespread presence of canyons along the continental edge which increase the benthic productivity. In contrast, the flows of consumption in the Salento food web seem to be driven by the planktonic productivity supporting the pelagic, benthopelagic, and demersal compartments. This condition could be favored by the large extension of the shelf break zone. The food-web models realized for the NWIS represent ideal platforms for the development of analysis with dynamic simulations. The comparative analysis of the two food webs by means of the FGs and their functional traits allowed the general pattern of ecosystem structure and functioning in the NWIS to be identified, making it an interesting approach to investigate the marine ecosystem.

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Yellow River Estuary and adjacent waters are famous shellfish production areas. Mactra veseriformis, Ruditapes philippinarum, and Meretix meretrix are important species for stocking enhancement. At present, the annual output of shellfish bottom sowing culture has reached 300 thousand tons, with an output value of 1.54 billion RMB. Over stocking of shellfish will cause environmental changes in marine, increase shellfish mortality and endanger ecosystem health. Accordingly, the assessment of the carrying capacity for shellfish based on ecosystem underpins responsible marine fisheries enhancement. In this study, an Ecopath mass-balance model of the Yellow River estuary and adjacent waters ecosystem constructed by Ecopath with Ecosim software was used to analyze the summary statistics parameters of the ecosystem, mixed trophic interactions, and to calculate the ecological carrying capacity of shellfish. The results showed that the ratio of total primary production/total respiration (TPP/TR) was 3.45, that of total primary production/total biomass (TPP/B) was 38.91, with the low Finn cycling index (0.028), high surplus production being 961.24 t·km-2·a-1 and low system connecting index (0.38), indicating that this ecosystem was at an unstable development stage. The increases of shellfish biomass would have positive impacts on Gobiidae, shrimps, crabs, and negative impacts on pelagic fishes, demersal fishes, edible jellyfish, zooplankton. Current biomass of shellfish was 5.5 t·km-2, with the potential enhancement. Based on the Ecopath model, the primary assessment of carrying capacity of shellfish was 18.22 t·km-2 in Yellow River estuary and its adjacent waters. This study provides scientific references for the sustainable development of fisheries resources in the Yellow River estuary.

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