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1.
J Mol Graph Model ; 120: 108417, 2023 05.
Artículo en Inglés | MEDLINE | ID: mdl-36706572

RESUMEN

Through an use of three functionals (B3PW91, B3LYP and BP86) associated to a generic basis set LanL2DZ for transition metals (as well as halogen atoms) and 6-311+G (d,p) for others atoms, an examination of the bonding properties of a series of mononuclear half-sandwich nd7 transition metal (anticancer) complexes based on N∩N dendritic scaffolds (L) has been done. Collectively, complexes studied have adopted the piano-stool environment. An examination of the performance of each functional has shown that for the most reliable geometrical analysis of Metal-Nitrogen and Metal-Halogen bonds, the B3LYP and B3PW91 functionalities are suitable respectively. Regardless of the halogen ligand adopted, the B3LYP metal-nitrogen bond lengths are the most widely overestimated. A correlation has been built between the retained charge on each divalent transition metal cation and its metal ion affinity (MIA). Topological examinations reveal the higher instability of metal-N bonds compared to metal-X ones (X = Cl and Br). By the mean of the energy decomposition analysis, a predominant electrostatic character of metal … halogen and [LCP]- … [MX]+ interaction has been demonstrated. The transition metal atom … (hydrophobic) surface (Cp*) interaction is most pronounced for the chloride rhodium complexes of rhodium (combined with (E)-N-(pyridin-2-ylmethylene) Propan-1-amine and 2,2'- dipyridylketone ligands and iridium combined with 2,2'- dipyridylketone ligand. The charge decomposition analysis displays the weakening of the [Formula: see text] bonds in the studied complexes.


Asunto(s)
Rodio , Elementos de Transición , Modelos Moleculares , Ligandos , Elementos de Transición/química , Nitrógeno
2.
J Mol Graph Model ; 104: 107830, 2021 05.
Artículo en Inglés | MEDLINE | ID: mdl-33444980

RESUMEN

In this paper, we have explored the bonding properties of a series of mononuclear half-sandwich nd7 anticancer complexes based on N∩O dendritic scaffolds (L) using two functionals (B3LYP and BP86) with generic basis set (LanL2DZ for transition metals (as well as halogen atoms) and 6-311 + G (d,p) for others atoms. The geometry optimization of structures have led to the adoption of the piano-stool environment and the formation of kings of intermolecular hydrogen bonding: CH … X (Cl,Br) (2.619-2.954) and CH...O (2.266-2.973 Å) interaction. The metal (M)-bromine bond distances have shown to be significantly higher than metal-chlorine ones. In chloride complexes, salicylaldimine ligand-Co2+ (-3097.15 kJ/mol) and salicylaldimine ligand-Ir2+ (-3436.78 kJ/mol) interactions are stronger. Except for cobalt complexes, the interaction energies are underestimated by B3LYP functional, by contrast B3LYP HOMO-LUMO gaps obtained are highly greater. The metal ion affinity (MIA) is increasing in the order: Ir+2

Asunto(s)
Preparaciones Farmacéuticas , Elementos de Transición , Enlace de Hidrógeno , Ligandos , Metales
3.
J Mol Model ; 26(9): 246, 2020 Aug 21.
Artículo en Inglés | MEDLINE | ID: mdl-32827077

RESUMEN

This paper is focused on the examination of the bonding properties of a series of [M(NHC)2X2] (M = nd8 transition metal; X = Cl, Br and I) complexes in normal, abnormal and mixed C∩C coordination modes. Structures have been optimised in gas phase using B3LYP, M06 and P3BW91 functionals. Two basis sets have been used: the LanL2DZ and a mixed basis set (LanL2DZ for nd8 transition metals as well as halogen atoms and 6-311+G(d,p) for other atoms). Results obtained indicate that the B3PW91 bond distances are closer to experimental data. The complexation energies obtained for each binding mode increase in the order: Ni2+ < Pd2+ < Pt2+, independently of the halogen atom adopted. From the Quantum Theory of Atoms in Molecule (QTAIM) approach, the instability has been found to follow this trend: M - X < M - C. The analysis of metal-ligand interactions using the natural bond orbital (NBO) revealed that the strongest metal-ligand interactions are observed in the normal binding mode. The NCH → MX2 donation terms were found to be interestingly predominant compared with back donation ones in the complexes studied, except in Pt chloride ones. The contribution of electrostatic interaction energy between the above fragments (∆Eelstat term) is in the range 57.48-63.95% traducing the fact that the interactions are mostly electrostatic. Graphical abstract.

4.
J Mol Model ; 25(1): 2, 2018 Dec 06.
Artículo en Inglés | MEDLINE | ID: mdl-30523420

RESUMEN

Low temperature oxidation of CO to CO2 is an important process for the environment. Similarly adsorption of CO from the releasing sources is also of major concern today. Whereas the potential of gold and silver clusters is well proven for the catalysis of the above mentioned reaction, the potential of aluminum (Al) clusters remains unexplored. The present study proves that, similar to the transition metals, Al clusters can also be used for adsorption of gases. We first tested the potential of Al cluster as adsorbents for CO. The high binding energy (BE) values prove that Al clusters can be used for adsorbing both CO and O2. Since oxygen binding is more facile, we adsorbed oxygen on Al and then checked the effect of this O2 on the BE of CO. The results were obtained by DFT calculations at M062X/TZVP level of theory. Graphical abstract Activation of carbon monoxide (CO) on oxygen-adsorbed aluminum (Al) cluster.

5.
J Mol Model ; 24(7): 185, 2018 Jun 30.
Artículo en Inglés | MEDLINE | ID: mdl-29961169

RESUMEN

Fused hexaphyrins have many physical and chemical properties and can coordinate transition metal ions. In this study, we investigated the geometric structure, charge decomposition analysis (CDA), spin density, frontier molecular orbital (FMO) compositions and absorption spectra of four oxygen doubly N-confused hexaphyrin (1.1.1.1.1.1) (ONCP) complexes with the metal ions Co(II), Ni(II), Cu(II) and Zn(II) (designated ONCP-d-Co, ONCP-d-Ni, ONCP-d-Cu and ONCP-d-Zn). Based on their energies, geometric structures, FMO characteristics and comparison to experiments, ONCP-d-Co and ONCP-d-Cu have the mix-states of the triplet state and broken-symmetry state (antiferromagnetic state) rather than the spin singlet of a closed shell as previously reported. Moreover, based on analyses of the spin density and spin population of the spin triplet ONCP-d-Co and ONCP-d-Cu complexes, the charge transfer in ONCP-d-Cu is greater than that in ONCP-d-Co because the spin density in ONCP-d-Cu is concentrated not only on the Cu ion but also on the ONCP ligand. Thus, the CDA value for ONCP-d-Cu is larger. Finally, through comparative analysis of the FMO compositions and absorption spectra, the complexes and ligand are shown to have very similar absorption spectra with characteristics that arise mainly from π → π* transitions both in the B-band and the Q-band, which is due to the FMO compositions being dominated by the highly delocalized conjugated system, rather than by the metal ions. The absorption maxima of the Q-band are ONCP-d-Co (1020 nm) > ONCP-d-Zn (1012 nm) > ONCP-d-Ni (997 nm) > ONCP-d-Cu (988 nm), which is inversely proportional to the energy gap in their FMOs. Graphical Abstract The present work investigates the geometric structure, charge decomposition analysis (CDA), spin density, frontier molecular orbital (FMO) compositions and absorption spectra of four oxygen doubly N-confused hexaphyrin (1.1.1.1.1.1) (ONCP) complexes with the metal ions Co(II), Ni(II), Cu(II) and Zn(II) (designated ONCP-d-Co, ONCP-d-Ni, ONCP-d-Cu and ONCP-d-Zn). Based on their energies, geometric structures, FMO characteristics and comparison to experiments, ONCP-d-Co and ONCP-d-Cu have the mix-state of the triplet state and broken-symmetry state (antiferromagnetic state) rather than the spin singlet of a close shell as were previously reported. Meanwhile, ONCP-d-Ni and ONCP-d-Zn show spin singlet structure. The calculated CDA shows the following order: ONCP-d-Cu (1.487) > ONCP-d-Ni (1.255) > ONCP-d-Co (1.211) > ONCP-d-Zn (1.201). Through comparisons of spin density and spin populations of ONCP-d-Co and ONCP-d-Cu, charge transfer between Cu and ligand ONCP is greater than that of Co and ONCP, which makes the CDA value of ONCP-d-Cu obviously larger than that of the other complexes.

6.
Chemistry ; 24(21): 5551-5561, 2018 Apr 11.
Artículo en Inglés | MEDLINE | ID: mdl-29383765

RESUMEN

Syntheses and molecular structures of the dimeric tin-platinum complex [LSnPtCl2 (SMe2 )]2 (2), the tin-platinum clusters [{LSnPtCl(SMe2 )}2 SnCl2 )] (3) and [(LSn)3 (PtCl2 )(PtClSnCl)(LSnOHCl)] (6) (L=MeN(CH2 CMe2 O- )2 ), and of the unprecedented tin(II) aminoalkoxide-tin oxide chloride complex [O(SnCl)2 ⋅(SnL)2 ] (5) are reported. The compounds were characterized by NMR spectroscopy (1 H, 13 C, 119 Sn, 195 Pt), 119 Sn Mössbauer spectroscopy (1-3, 6), electrospray ionization mass spectrometry, elemental analyses, and single-crystal X-ray diffraction analyses (2⋅CH2 Cl2 , 3⋅2 C4 H8 O, 5, 6⋅3CH2 Cl2 ). The tin(II) aminoalkoxide [MeN(CH2 CMe2 O)2 Sn]2 (1) behaves like a neutral ligand, inserts into a Pt-Cl bond, or is involved in rearrangement reactions with the different behavior occurring even within one compound (3, 6). DFT calculations show that the tin-platinum compounds behave like electronic chameleons.

7.
Comput Theor Chem ; 1114: 140-145, 2017 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-28819583

RESUMEN

The reactions of Ni+ with propionaldehyde in the gas phase have been systematically investigated using density functional theory at the B3LYP/def2-TZVP level. The decomposition reaction mechanism has been identified. Our calculations indicated that Ni+ can assist decomposition of propionaldehyde to form Ni+CO and C2H6 through two types of reaction channel: C-C bond activation and C-H bond activation. In addition, charge decomposition analysis (CDA) was carried out to obtain a deeper understanding for orbital interaction of the initial complex. The bonding properties of the species involved were discussed by means of diverse analysis methods including electron localization function (ELF) and atoms in molecules (AIM).

8.
J Comput Chem ; 38(20): 1752-1761, 2017 07 15.
Artículo en Inglés | MEDLINE | ID: mdl-28394037

RESUMEN

The hexanuclear thioguanidine mixed-valent copper complex cation [Cu6 (NGuaS)6 ]+2 (NGuaS = o-SC6 H4 NC(NMe2 )2 ) and its oxidized/reduced states are theoretically analyzed by means of density functional theory (DFT) (TPSSh + D3BJ/def2-TZV (p)). A detailed bonding analysis using overlap populations is performed. We find that a delocalized Cu-based ring orbital serves as an acceptor for donated S p electrons. The formed fully delocalized orbitals give rise to a confined electron cloud within the Cu6 S6 cage which becomes larger on reduction. The resulting strong electrostatic repulsion might prevent the fully reduced state. Experimental UV/Vis spectra are explained using time-dependent density functional theory (TD-DFT) and analyzed with a natural transition orbital analysis. The spectra are dominated by MLCTs within the Cu6 S6 core over a wide range but LMCTs are also found. The experimental redshift of the reduced low energy absorption band can be explained by the clustering of the frontier orbitals. © 2017 Wiley Periodicals, Inc.

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