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1.
Nat Commun ; 13(1): 7522, 2022 12 06.
Artículo en Inglés | MEDLINE | ID: mdl-36473871

RESUMEN

Insulin receptor (IR) signaling is central to normal metabolic control and is dysregulated in metabolic diseases such as type 2 diabetes. We report here that IR is incorporated into dynamic clusters at the plasma membrane, in the cytoplasm and in the nucleus of human hepatocytes and adipocytes. Insulin stimulation promotes further incorporation of IR into these dynamic clusters in insulin-sensitive cells but not in insulin-resistant cells, where both IR accumulation and dynamic behavior are reduced. Treatment of insulin-resistant cells with metformin, a first-line drug used to treat type 2 diabetes, can rescue IR accumulation and the dynamic behavior of these clusters. This rescue is associated with metformin's role in reducing reactive oxygen species that interfere with normal dynamics. These results indicate that changes in the physico-mechanical features of IR clusters contribute to insulin resistance and have implications for improved therapeutic approaches.


Asunto(s)
Diabetes Mellitus Tipo 2 , Resistencia a la Insulina , Humanos , Receptor de Insulina , Diabetes Mellitus Tipo 2/tratamiento farmacológico , Insulina
2.
iScience ; 24(8): 102940, 2021 Aug 20.
Artículo en Inglés | MEDLINE | ID: mdl-34430819

RESUMEN

Human immunodeficiency virus (HIV) can infect cells and take a quiescent and nonexpressive state called latency. In this study, we report insights provided by label-free, gradient light interference microscopy (GLIM) about the changes in dry mass, diameter, and dry mass density associated with infected cells that occur upon reactivation. We discovered that the mean cell dry mass and mean diameter of latently infected cells treated with reactivating drug, TNF-α, are higher for latent cells that reactivate than those of the cells that did not reactivate. Cells with mean dry mass and diameter less than approximately 10 pg and 8 µm, respectively, remain exclusively in the latent state. Also, cells with mean dry mass greater than approximately 28-30 pg and mean diameter greater than 11-12 µm have a higher probability of reactivating. This study is significant as it presents a new label-free approach to quantify latent reactivation of a virus in single cells.

3.
Cell Rep ; 25(13): 3844-3857.e5, 2018 12 26.
Artículo en Inglés | MEDLINE | ID: mdl-30590053

RESUMEN

Latently infected T cells able to reinitiate viral propagation throughout the body remain a major barrier to curing HIV. Distinguishing between latently infected cells and uninfected cells will advance efforts for viral eradication. HIV decision-making between latency and active replication is stochastic, and drug cocktails that increase bursts of viral gene expression enhance reactivation from latency. Here, we show that a larger host-cell size provides a natural cellular mechanism for enhancing burst size of viral expression and is necessary to destabilize the latent state and bias viral decision-making. Latently infected Jurkat and primary CD4+ T cells reactivate exclusively in larger activated cells, while smaller cells remain silent. In addition, reactivation is cell-cycle dependent and can be modulated with cell-cycle-arresting compounds. Cell size and cell-cycle dependent decision-making of viral circuits may guide stochastic design strategies and applications in synthetic biology and may provide important determinants to advance diagnostics and therapies.


Asunto(s)
Linfocitos T CD4-Positivos/patología , Linfocitos T CD4-Positivos/virología , Tamaño de la Célula , Redes Reguladoras de Genes , Genes Virales , Ciclo Celular , Células Cultivadas , Regulación de la Expresión Génica , VIH-1/genética , Humanos , Modelos Biológicos , Regiones Promotoras Genéticas/genética , Secuencias Repetidas Terminales/genética , Activación Viral/genética , Latencia del Virus/genética
4.
APL Bioeng ; 2(2): 026106, 2018 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-31069303

RESUMEN

Engineering stochastic fluctuations of gene expression (or "noise") is integral to precisely bias cellular-fate decisions and statistical phenotypes in both single-cell and multi-cellular systems. Epigenetic regulation has been shown to constitute a large source of noise, and thus, engineering stochasticity is deeply intertwined with epigenetics. Here, utilizing chromatin remodeling, we report that Caffeic acid phenethyl ester (CA) and Pyrimethamine (PYR), two inhibitors of BAF250a, a subunit of the Brahma-associated factor (BAF) nucleosome remodeling complex, enable differential and tunable control of noise in transcription and translation from the human immunodeficiency virus long terminal repeat promoter in a dose and time-dependent manner. CA conserves noise levels while increasing mean abundance, resulting in direct tuning of the transcriptional burst size, while PYR strictly increases transcriptional initiation frequency while conserving a constant transcriptional burst size. Time-dependent treatment with CA reveals non-continuous tuning with noise oscillating at a constant mean abundance at early time points and the burst size increasing for treatments after 5 h. Treatments combining CA and Protein Kinase C agonists result in an even larger increase of abundance while conserving noise levels with a highly non-linear increase in variance of up to 63× untreated controls. Finally, drug combinations provide non-antagonistic combinatorial tuning of gene expression noise and map a noise phase space for future applications with viral and synthetic gene vectors. Active remodeling of nucleosomes and BAF-mediated control of gene expression noise expand a toolbox for the future design and engineering of stochasticity in living systems.

5.
Nat Commun ; 8: 15006, 2017 05 02.
Artículo en Inglés | MEDLINE | ID: mdl-28462923

RESUMEN

Viral-host interactomes map the complex architecture of an evolved arms race during host cell invasion. mRNA and protein interactomes reveal elaborate targeting schemes, yet evidence is lacking for genetic coupling that results in the co-regulation of promoters. Here we compare viral and human promoter sequences and expression to test whether genetic coupling exists and investigate its phenotypic consequences. We show that viral-host co-evolution is imprinted within promoter gene sequences before transcript or protein interactions. Co-regulation of human immunodeficiency virus (HIV) and human C-X-C chemokine receptor-4 (CXCR4) facilitates migration of infected cells. Upon infection, HIV can actively replicate or remain dormant. Migrating infected cells reactivate from dormancy more than non-migrating cells and exhibit differential migration-reactivation responses to drugs. Cells producing virus pose a risk for reinitiating infection within niches inaccessible to drugs, and tuning viral control of migration and reactivation improves strategies to eliminate latent HIV. Viral-host genetic coupling establishes a mechanism for synchronizing transcription and guiding potential therapies.


Asunto(s)
Linfocitos T CD4-Positivos/efectos de los fármacos , Movimiento Celular/efectos de los fármacos , VIH-1/efectos de los fármacos , Interacciones Huésped-Patógeno , Regiones Promotoras Genéticas/efectos de los fármacos , Activación Viral/efectos de los fármacos , Linfocitos T CD4-Positivos/metabolismo , Linfocitos T CD4-Positivos/virología , Depsipéptidos/farmacología , Regulación de la Expresión Génica , Duplicado del Terminal Largo de VIH/genética , VIH-1/genética , VIH-1/crecimiento & desarrollo , VIH-1/metabolismo , Células HL-60 , Humanos , Ácidos Hidroxámicos/farmacología , Indoles/farmacología , Ionomicina/farmacología , Células Jurkat , Panobinostat , Ésteres del Forbol/farmacología , Cultivo Primario de Células , Receptores CXCR4/genética , Receptores CXCR4/metabolismo , Tamoxifeno/farmacología , Transcripción Genética , Factor de Necrosis Tumoral alfa/farmacología , Latencia del Virus , Vorinostat , Productos del Gen tat del Virus de la Inmunodeficiencia Humana/genética , Productos del Gen tat del Virus de la Inmunodeficiencia Humana/metabolismo
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