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A novel and in situ technique is presented here as a better alternative to culture-dependent and PCR-based techniques for the quantitative detection of predominant bacterial species involved in the bioremediation of contaminants. It allowed rapid, specific and in situ identification of Biosep-immobilized eubacteria from MTBE- and benzene-contaminated matrices.

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Stable isotope fractionation analysis of an aquifer heavily contaminated with benzene (up to 850 mg L(-1)) and toluene (up to 50 mg L(-1)) at a former hydrogenation plant in Zeitz (Saxonia, Germany) has suggested that significant biodegradation of toluene was occurring. However, clear evidence of benzene biodegradation has been lacking at this site. Determining the fate of benzene is often a determining factor in regulatory approval of a risk-based management strategy. The objective of the work described here was the demonstration of a new tool that can be used to provide proof of biodegradation of benzene or other organics by indigenous microorganisms under actual aquifer conditions. Unique in situ biotraps containing Bio-Sep beads, amended with 13C-labeled or 12C nonlabeled benzene and toluene, were deployed at the Zeitz site for 32 days in an existing groundwater monitoring well and used to collect and enrich microbial biofilms. Lipid biomarkers or remaining substrate was extracted from the beads and analyzed by mass spectrometry and molecular methods. Isotopic analysis of the remaining amounts of 13C-labeled contaminants (about 15-18% of the initial loading) showed no alteration of the 12C/13C ratio during incubation. Therefore, no measurable exchange of labeled compounds in the beads by the nonlabeled compounds in the aquifer materials occurred. Isotopic ratio analysis of microbial lipid fatty acids (as methyl ester derivatives) from labeled benzene- and toluene-amended biotraps showed 13C enrichment in several fatty acids of up to delta (13C) 13400%o, clearly verifying benzene and toluene biodegradation and the transformation of the labeled carbon into biomass by indigenous organisms under aquifer conditions. Fatty acid profiles of total lipid fatty acids and the phospholipid fatty acid fraction and their isotopic composition showed significant differences between benzene- and toluene-amended biotraps, suggesting that different microbial communities were involved in the biodegradation of the two compounds.

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A down-well aquifer microbial sampling system was developed using glass wool or Bio-Sep beads as a solid-phase support matrix. Here we describe the use of these devices to monitor the groundwater microbial community dynamics during field bioremediation experiments at the U.S. Department of Energy Natural and Accelerated Bioremediation Research Program's Field Research Center at the Oak Ridge National Laboratory. During the 6-week deployment, microbial biofilms colonized glass wool and bead internal surfaces. Changes in viable biomass, community composition, metabolic status, and respiratory state were reflected in sampler composition, type of donor, and groundwater pH. Biofilms that formed on Bio-Sep beads had 2-13 times greater viable biomass; however, the bead communities were less metabolically active [higher cyclopropane/monoenoic phospholipid fatty acid (PLFA) ratios] and had a lower aerobic respiratory state (lower total respiratory quinone/ PLFA ratio and ubiquinone/menaquinone ratio) than the biofilms formed on glass wool. Anaerobic growth in these systems was characterized by plasmalogen phospholipids and was greater in the wells that received electron donor additions. Partial 16S rDNA sequences indicated that Geobacter and nitrate-reducing organisms were induced by the acetate, ethanol, or glucose additions. DNA and lipid biomarkers were extracted and recovered without the complications that commonly plague sediment samples due to the presence of clay or dissolved organic matter. Although microbial community composition in the groundwater or adjacent sediments may differ from those formed on down-well biofilm samplers, the metabolic activity responses of the biofilms to modifications in groundwater geochemistry record the responses of the microbial community to biostimulation while providing integrative sampling and ease of recovery for biomarker analysis.

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Successful treatment of refinery spent-sulfidic caustic (which results from the addition of sodium hydroxide solutions to petroleum refinery waste streams) was achieved in a bioreactor containing an enrichment culture immobilized in organic polymer beads with embedded powdered activated carbon (Bio-Sep). The aerobic enrichment culture had previously been selected using a gas mixture of hydrogen sulfide and methyl mercaptan (MeSH) as the sole carbon and energy sources. The starting cultures for the enrichment consisted of several different Thiobacilli spp. (T. thioparus, T. denitrificans, T. thiooxidans, and T. neopolitanus), as well as activated sludge from a refinery aerobic wastewater treatment system and sludge from an industrial anaerobic digester. Microscopic examination (light and SEM) of the beads and of microbial growth on the walls of the bioreactor revealed a great diversity of microorganisms. Further characterization was undertaken starting with culturable aerobic heterotrophic microorganisms (sequencing of PCR-amplified DNA coding for 16S rRNA, Gram staining) and by PCR amplification of DNA coding for 16S rRNA extracted directly from the cell mass, followed by the separation of the PCR products by DGGE (denaturing gradient gel electrophoresis). Eight prominent bands from the DGGE gel were sequenced and found to be closest to sequences of uncultured Cytophagales (3 bands), Gram-positive cocci (Micrococcineae), alpha proteobacteria (3 bands), and an unidentified beta proteobacterium. Culturable microbes included several genera of fungi as well as various Gram-positive and Gram-negative heterotrophic bacteria not seen in techniques using direct DNA extraction.

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It has been demonstrated that an enrichment culture dominated by Thiomicrospira sp. CVO may be cultured on H2S(g) as an energy source under sulfide-limiting conditions in suspended culture with nitrate as the electron acceptor. Hydrogen sulfide (10,000 ppmv) was completely removed from the feed gas and oxidized to sulfate in <3 s of gas-liquid contacting time. Maximum loading of the biomass for sulfide oxidation was observed to be 5.8 mmol H2S/h-g biomass protein, comparable to that reported previously for Thiobacillus denitrificans under similar conditions. However, the enrichment culture was shown to be more tolerant of extremes in pH and elevated temperature than T. denitrificans. Coupled with a reported tolerance of CVO for up to 10% NaCl, these observations suggest that a CVO-based culture is potentially a more robust biocatalyst system for sulfide oxidation than cultures based on Thiobacilli.

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Sodium hydroxide solutions are used in petroleum refining to remove hydrogen sulfide (H2S) and mercaptans from various hydrocarbon streams. The resulting sulfide-laden waste stream is called spent-sulfidic caustic. An aerobic enrichment culture was previously developed using a gas mixture of H2S and methyl-mercaptan (MeSH) as the sole energy source. This culture has now been immobilized in a novel support matrix, DuPont BIO-SEP beads, and is used to bio-treat a refinery spent-sulfidic caustic containing both inorganic sulfide and mercaptans in a continuous flow, fluidized-bed column bioreactor. Complete oxidation of both inorganic and organic sulfur to sulfate was observed with no breakthrough of H2S and < 2 ppmv of MeSH produced in the bioreactor outlet gas. Excessive buildup of sulfate (> 12 g/L) in the bioreactor medium resulted in an upset condition evidenced by excessive MeSH breakthrough. Therefore, bioreactor performance was limited by the steady-state sulfate concentration. Further improvement in volumetric productivity of a bioreactor system based on this enrichment culture will be dependent on maintenance of sulfate concentrations below inhibitory levels.

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Thiobacillus denitrificans has been shown to be an effective biocatalyst for the treatment of a variety of sulfide-laden waste streams including sour water, sour gases, and refinery spent-sulfidic caustics. The term 'sour' originated in the petroleum industry to describe a waste contaminated with hydrogen sulfide or salts of sulfide and bisulfide. The microbial treatment of sour waste streams resulting from the production or refining of natural gas and crude oil have been investigated in this laboratory for many years. The application of this technology to the treatment of sour wastes on a commercially useful scale has presented several technical barriers including substrate inhibition (sulfide), product inhibition (sulfate), the need for septic operation, biomass recycle and recovery, mixed waste issues, and the need for large-scale cultivation of the organism for process startup. The removal of these barriers through process improvements are discussed in terms of a case study of the full-scale treatment of sulfide-rich wastewater. The ability of T. denitrificans to deodorize and detoxify an oil-field produced water containing sulfides was evaluated under full-scale field conditions at Amoco Production Co. Salt Creek Field in Midwest, WY. More than 800 m3/d of produced water containing 100 mg/L sulfide and total dissolved solids of 4800 mg/L were successfully biotreated in an earthen pit (3000 m3) over a six-month period. Complete removal of sulfides and elimination of associated odors were observed. The system could be upset by severe hydraulic disturbances; however, the system recovered rapidly when normal influent flow rates were restored.

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Refinery spent-sulfidic caustic, containing only inorganic sulfides, has previously been shown to be amenable to biotreatment with Thiobacillus denitrificans strain F with complete oxidation of sulfides to sulfate. However, many spent caustics contain mercaptans that cannot be metabolized by this strict autotroph. An aerobic enrichment culture was developed from mixed Thiobacilli and activated sludge that was capable of simultaneous oxidation of inorganic sulfide and mercaptans using hydrogen sulfide (H2S) and methylmercaptan (MeSH) gas feeds used to simulate the inorganic and organic sulfur of a spent-sulfidic caustic. The enrichment culture was also capable of biotreatment of an actual mercaptan-containing, spent-sulfidic caustic but at lower rates than predicted by operation on MeSH and H2S fed to the culture in the gas phase, indicating that the caustic contained other inhibitory components.

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Caustics are used in petroleum refining to remove hydrogen sulfide from various hydrocarbon streams. Spent-sulfidic caustics from three refineries have been successfully biotreated on the bench and pilot scale, resulting in neutralization and removal of active Sulfides. Sulfides were completely oxidized to sulfate by Thiobacillus denitrificans strain F. Microbial oxidation of sulfide produced acid, which at least partially neutralized the caustic. A commercial-scale treatment system has been designed that features a bioreactor with a suspended culture of flocculated T. denitrificans, a settler and acid and nutrient storage and delivery systems. A cost analysis has been performed for nine cases representing a range of spent caustic sulfide and hydroxide concentrations at a base treatment rate of 10 gpm. This analysis shows that refinery spent-sulfidic caustic can be biotreated for 4-8.3 cent/gal.

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Gas condensate liquids contaminate soil and ground water at two gas production sites in the Denver Basin, CO. A detailed field study was carried out at these sites to determine the applicability of intrinsic bioremediation as a remediation option. Ground water monitoring at the field sites and analysis of soil cores suggested that intrinsic bioremediation is occurring at the sites by multiple pathways, including aerobic oxidation, sulfate reduction, and possibly reduction Fe(III) reduction. Laboratory investigations were conducted to verify that the water-soluble components of the gas condensate (benzene, toluene, ethylbenzene, and xylene [BTEX]) are intrinsically biodegradable under anoxic conditions in the presence of alternate electron acceptors and soil from the field site. Slurry-phase experiments were conducted in which soil obtained from the field site was mixed with an aqueous phase containing nutrients and electron acceptors (nitrate, Fe[III], sulfate and carbon dioxide) in serum bottles. The aqueous phase also contained soluble components of gas condensate, at two different hydrocarbon concentrations, obtained from the field site. The soil was either pristine (native) soil or soil obtained from a condensate-contaminated region. The aqueous phase was sampled for electron acceptors, hydrocarbons, and possible products of hydrocarbon degradation. Toluene and xylenes were biodegraded with nitrate or sulfate as the electron acceptor. No degradation of benzene was observed under anoxic conditions.

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Condensate liquids have been found to contaminate soil and ground water at two gas production sites in the Denver Basin operated by Amoco Production Co. These sites have been closely monitored since July 1993 to determine whether intrinsic aerobic or anaerobic bioremediation of hydrocarbons occurs at a sufficient rate and to an adequate end point to support a no-intervention decision. Ground water monitoring, soil gas analysis, and analysis of soil cores suggest that bioremediation is occurring at these sites by multiple pathways, including aerobic oxidation, sulfate reduction, and methanogenesis. Results of over two years of monitoring of ground water and soil chemistry at these sites are presented to support this conclusion.

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Porphyrin-metal complexes are potentially useful to catalyze redox reactions, which convert toxic and biologically recalcitrant compounds to compounds that are less toxic and more amenable to biotreatment. Porphyrins, in the absence of proteins as in ligninases, peroxidases, and oxidases, are potentially more robust than enzymes and microbial cultures in the treatment of inhibitory substances.2,4,6-Trichlorophenol was used as a model compound for chlorinated phenols and as a substrate for various porphyrin-metal complexes acting as oxidation catalysts. t-Butyl hydroperoxide was the oxidizing agent. TCP was shown to be at least partially dechlorinated and the aromatic ring broken in reaction products. All porphyrins exhibited saturation kinetics with regard to the initial TCP concentration in reaction mixtures. Electron-withdrawing substituents on the porphyrins were observed to increase stability of the catalysts to inactivating ring-centered oxidation.

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Condensate liquids have been found to contaminate soil and groundwater at two gas production sites in the Denver Basin operated by Amoco Production Co. These sites have been closely monitored since July 1993 to determine whether intrinsic aerobic or anaerobic bioremediation of hydrocarbons occurs at a sufficient rate and to an adequate end point to support a no-intervention decision. Groundwater monitoring and analysis of soil cores suggest that intrinsic bioremediation is occurring at these sites by multiple pathways, including aerobic oxidation, Fe(III) reduction, and sulfate reduction.

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A concentrated stream of sulfur dioxide (SO2) is produced by regeneration of the sorbent in certain new regenerable processes for the desulfurization of flue gas. We have previously proposed that this SO2 can be converted to elemental sulfur for disposal or byproduct recovery using a microbial/Claus process. In this process, two-thirds of the SO2-reducing gas stream would be contacted with a mixed culture containing sulfate-reducing bacteria (SRB), where SO2 would act as an electron acceptor with reduction to hydrogen sulfide (H2S). This H2S could then be recombined with the remaining SO2 and sent to a Claus unit to produce elemental sulfur. The sulfate-reducing bacterium, Desulfovibrio desulfuricans, has been immobilized by coculture with flocforming heterotrophs from an anaerobic digester, resulting in a SO2-reducing floc that may be collected from the effluent of a continuous reactor for recycle by gravity sedimentation. The carbon and energy source for these cultures was anaerobically digested municipal sewage solids. The maximum specific activity for SO2 reduction in these cultures, in terms of dry weight of D. desulfuricans biomass, was 9.1 mmol of SO2/h.g. The stoichiometry with respect to the electron donor was 15.5 mg of soluble COD/mmol of SO2 reduced.

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Two heterotrophic denitrifying bacteria, Paracoccus denitrificans and Pseudomonas denitrificans, have been shown to utilize nitric oxide (NO) as a terminal electron acceptor and succinate, yeast extract, and heat/alkali pretreated municipal sewage sludge as carbon and energy sources. Complete removal of NO (0.50%) from a feed gas sparged into the cultures was observed. It is suggested that reduction of NO may be a common feature of denitrifying bacteria and that a microbial process to dispose of NO(x) may be economically viable.

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It has been demonstrated tht heat- and alkali-pretreated-sewage sludge may serve as an electron donor and carbon source for SO2 reduction by Desulfovibrio desulfuricans. A continuous D. desulfuricans culture was operated for 6 mo with complete reduction of SO2 to H2S. The culture required only minor amounts of mineral nutrients in addition to pretreated sewage sludge. It has also been shown that the sulfate-reducing bacterium Desulfotomaculum orientis can be grown on H2 as an energy source, CO2 as a carbon source, and SO2 as a terminal electron acceptor. Complete reduction of SO2 to H2S was observed.

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A PC-based machine vision system has been used to continuously monitor changes in biomass concentration and to control the undesirable production of colloidal elemental sulfur (a reactor upset condition due to an excessive concentration of inhibitory sulfide substrate) in a bioreactor containing Thiobacillus denitrificans. A field of view of a video camera was established which contained regions of different background lighting. Mean values of the distribution of red, green, and blue intensity components within corresponding regions of a digital image image captured from the camera were used to monitor color changes associated with changes in biomass concentration, and to determine if the reactor was in an upset condition. The ration of red to blue intensity components was an important parameter in detecting the formation of an elemental sulfur precipitant. Using a stepper motor-driven pressure regulator, intelligent process control was performed by altering the hydrogen sulfide feed flow rate setpoint on the vision system measurements.

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In a continuous fermentation, significant advantages may be gained by immobilization of microbial cells. Immobilization allows cells to be retained in the fermenter or to be readily recovered and recycled. Therefore, the hydraulic retention time and the biomass retention time are decoupled. A novel cell immobilization has been developed for the immobilization of autotrophic bacteria by coculture with floc-forming heterotrophic bacteria with growth of the latter limited by the availability of organic carbon. The result is an immobilization matrix which grows along with the immobilized autotroph. We have previously demonstrated the utility of this approach by immobilizing the chemoautotroph Thiobacillus denitrificans in macroscopic floc by coculture with floc-forming heterotrophs from an activated sludge treatment facility. Floc with excellent settling characteristics were produced. These floc have now been used to remove H(2)S from a gas stream bubbled through continuous cultures. The stoichiometry and kinetics of H(2)S oxidation by immobilized T. denitrificans were comparable to that reported previously for free-cell cultures. Oxygen uptake measurements indicated the growth of both T. denitrificans and the heterotrophs although the medium contained no added organic carbon. Continuous cultures with total biomass recycle were maintained for up to four months indicating the long-term stability of the commensal relationship between the immobilized autotroph and the heterotrophs which composed the immobilization matrix. It was observed that at any given H(2)S loading the biomass concentration reached a maximum and leveled out. The ultimate biomass concentration was dependent upon the H(2)S feed rate.

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A program is under way at the University of Tulsa to develop a viable process concept whereby a microbial process can impact on the problem of flue gas desulfurization and NOx removal. We have previously reported studies of SO2 reduction by Desulfovibrio desulfuricans and NOx reduction by Thiobacillus denitrificans. One potential process concept is the simultaneous combined removal of SO2 and NOx from cooled flue gas by contact with cultures of sulfate-reducing bacteria (SO2----H2S) and T. denitrificans (H2S----SO4(-2) as cultures-in-series or in coculture in a single contacting stage. Each of these contacting schemes has been investigated.

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