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1.
Diagnostics (Basel) ; 12(5)2022 May 17.
Artículo en Inglés | MEDLINE | ID: mdl-35626404

RESUMEN

PURPOSE: The role of erectile dysfunction (ED) has recently shown an association with the risk of stroke and coronary heart disease (CHD) via the atherosclerotic pathway. Cardiovascular disease (CVD)/stroke risk has been widely understood with the help of carotid artery disease (CTAD), a surrogate biomarker for CHD. The proposed study emphasizes artificial intelligence-based frameworks such as machine learning (ML) and deep learning (DL) that can accurately predict the severity of CVD/stroke risk using carotid wall arterial imaging in ED patients. METHODS: Using the PRISMA model, 231 of the best studies were selected. The proposed study mainly consists of two components: (i) the pathophysiology of ED and its link with coronary artery disease (COAD) and CHD in the ED framework and (ii) the ultrasonic-image morphological changes in the carotid arterial walls by quantifying the wall parameters and the characterization of the wall tissue by adapting the ML/DL-based methods, both for the prediction of the severity of CVD risk. The proposed study analyzes the hypothesis that ML/DL can lead to an accurate and early diagnosis of the CVD/stroke risk in ED patients. Our finding suggests that the routine ED patient practice can be amended for ML/DL-based CVD/stroke risk assessment using carotid wall arterial imaging leading to fast, reliable, and accurate CVD/stroke risk stratification. SUMMARY: We conclude that ML and DL methods are very powerful tools for the characterization of CVD/stroke in patients with varying ED conditions. We anticipate a rapid growth of these tools for early and better CVD/stroke risk management in ED patients.

2.
Front Biosci (Landmark Ed) ; 25(7): 1202-1229, 2020 03 01.
Artículo en Inglés | MEDLINE | ID: mdl-32114430

RESUMEN

This study presents the classification of malaria-prone zones based on (a) meteorological factors, (b) demographics and (c) patient information. Observations are performed on extended features in dataset over the spiking and non-spiking classifiers including Quadratic Integrate and Fire neuron (QIFN) model as a benchmark. As per research studies, parasite transmission is highly dependent on the (i) stagnant water, (ii) population of area and the (iii) greenery of the locality. Considering these factors, three more attributes were added to the existing novel dataset and comparison on the results is presented. For four feature dataset, QIFN exhibited an accuracy of 97.08% in K10 protocol, and with extended dataset; QIFN yields an accuracy of 99.58% in K10 protocol. The benchmarking results showed reliability and stability. There is 12.47% improvement against multilayer perceptron (MLP) and 5.39% against integrate-and-fire neuron (IFN) model. The QIFN model performed the best over the conventional classifiers for deciphering the risk of acquiring malaria in different geographical regions worldwide.


Asunto(s)
Algoritmos , Malaria/epidemiología , Conceptos Meteorológicos , Modelos Teóricos , Redes Neurales de la Computación , Máquina de Vectores de Soporte , Animales , Humanos , Incidencia , India/epidemiología , Insectos Vectores/parasitología , Malaria/parasitología , Reproducibilidad de los Resultados
3.
Front Biosci (Landmark Ed) ; 25(2): 299-334, 2020 01 01.
Artículo en Inglés | MEDLINE | ID: mdl-31585891

RESUMEN

Malaria is an infectious disease caused by parasitic protozoans of the Plasmodium family. These parasites are transmitted by mosquitos which are common in certain parts of the world. Based on their specific climates, these regions have been classified  as low and high risk regions using a backpropagation neural network (BPNN). However, this approach yielded low performance and stability necessitating development of a more robust model. We hypothesized that by spiking neuron models in simulating the characteristics of a neuron, which when embedded with a BPNN, could improve the performance for the assessment of malaria prone regions. To this end, we created an inter-spike interval (ISI)-based BPNN (ISI-BPNN) architecture that uses a single-pass spiking learning strategy and has a parallel structure that is useful for non-linear regression tasks. Existing malaria dataset comprised of 1296 records, that met these attributes, were used. ISI-BPNN showed superior performance, and a high accuracy. The benchmarking results showed reliability and stability and an improvement of 11.9% against a multilayer perceptron and 9.19% against integrate-and-fire neuron models. The ISI-BPNN model is well suited for deciphering the risk of acquiring malaria as well as other diseases in prone regions of the world.


Asunto(s)
Algoritmos , Malaria/epidemiología , Modelos Teóricos , Redes Neurales de la Computación , Máquina de Vectores de Soporte , Geografía , Humanos , Humedad , Incidencia , India/epidemiología , Malaria/diagnóstico , Lluvia , Reproducibilidad de los Resultados , Estaciones del Año , Temperatura
4.
PLoS One ; 8(5): e64040, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-23737964

RESUMEN

BACKGROUND: The 16 kDa heat shock protein (HSP) is an immuno-dominant antigen, used in diagnosis of infectious Mycobacterium tuberculosis (M.tb.) causing tuberculosis (TB). Its use in serum-based diagnostics is limited, but for the direct identification of M.tb. bacteria in sputum or cultures it may represent a useful tool. Recently, a broad set of twelve 16 kDa specific heavy chain llama antibodies (VHH) has been isolated, and their utility for diagnostic applications was explored. METHODOLOGY/PRINCIPAL FINDINGS: To identify the epitopes recognized by the nine (randomly selected from a set of twelve 16 kDa specific VHH antibodies) distinct VHH antibodies, 14 overlapping linear epitopes (each 20 amino acid long) were characterized using direct and sandwich ELISA techniques. Seven out of 14 epitopes were recognized by 8 out of 9 VHH antibodies. The two highest affinity binders B-F10 and A-23 were found to bind distinct epitopes. Sandwich ELISA and SPR experiments showed that only B-F10 was suitable as secondary antibody with both B-F10 and A-23 as anchoring antibodies. To explain this behavior, the epitopes were matched to the putative 3D structure model. Electrospray ionization time-of-flight mass spectrometry and size exclusion chromatography were used to determine the higher order conformation. A homodimer model best explained the differential immunological reactivity of A-23 and B-F10 against heat-treated M.tb. lysates. CONCLUSIONS/SIGNIFICANCE: The concentrations of secreted antigens of M.tb. in sputum are too low for immunological detection and existing kits are only used for identifying M.tb. in cultures. Here we describe how specific combinations of VHH domains could be used to detect the intracellular HSP antigen. Linked to methods of pre-concentrating M.tb. cells prior to lysis, HSP detection may enable the development of protein-based diagnostics of sputum samples and earlier diagnosis of diseases.


Asunto(s)
Proteínas Bacterianas/metabolismo , Camélidos del Nuevo Mundo , Proteínas de Choque Térmico/metabolismo , Calor , Cadenas Pesadas de Inmunoglobulina/inmunología , Mycobacterium tuberculosis/aislamiento & purificación , Multimerización de Proteína , Secuencia de Aminoácidos , Animales , Especificidad de Anticuerpos , Proteínas Bacterianas/química , Proteínas Bacterianas/inmunología , Mapeo Epitopo , Proteínas de Choque Térmico/química , Proteínas de Choque Térmico/inmunología , Modelos Moleculares , Datos de Secuencia Molecular , Peso Molecular , Mycobacterium tuberculosis/inmunología , Mycobacterium tuberculosis/metabolismo , Mycobacterium tuberculosis/fisiología , Fragmentos de Péptidos/química , Fragmentos de Péptidos/inmunología , Estructura Cuaternaria de Proteína , Esputo/microbiología , Tuberculosis/diagnóstico
5.
PLoS One ; 6(10): e26754, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-22046343

RESUMEN

BACKGROUND: Recombinant antibodies are powerful tools in engineering of novel diagnostics. Due to the small size and stable nature of llama antibody domains selected antibodies can serve as a detection reagent in multiplexed and sensitive assays for M. tuberculosis. METHODOLOGY/PRINCIPAL FINDINGS: Antibodies for Mycobacterium tuberculosis (M. tb) recognition were raised in Alpaca, and, by phage display, recombinant variable domains of heavy-chain antibodies (VHH) binding to M. tuberculosis antigens were isolated. Two phage display selection strategies were followed: one direct selection using semi-purified protein antigen, and a depletion strategy with lysates, aiming to avoid cross-reaction to other mycobacteria. Both panning methods selected a set of binders with widely differing complementarity determining regions. Selected recombinant VHHs were produced in E. coli and shown to bind immobilized lysate in direct Enzymelinked Immunosorbent Assay (ELISA) tests and soluble antigen by surface plasmon resonance (SPR) analysis. All tested VHHs were specific for tuberculosis-causing mycobacteria (M. tuberculosis, M. bovis) and exclusively recognized an immunodominant 16 kDa heat shock protein (hsp). The highest affinity VHH had a dissociation constant (KD) of 4 × 10(-10) M. CONCLUSIONS/SIGNIFICANCE: A broad set of different llama antibodies specific for 16 kDa heat shock protein of M. tuberculosis is available. This protein is highly stable and abundant in M. tuberculosis. The VHH that detect this protein are applied in a robust SPR sensor for identification of tuberculosis-causing mycobacteria.


Asunto(s)
Anticuerpos Antibacterianos/inmunología , Proteínas de Choque Térmico/inmunología , Mycobacterium tuberculosis/inmunología , Tuberculosis/diagnóstico , Animales , Anticuerpos Antibacterianos/biosíntesis , Antígenos Bacterianos/inmunología , Camélidos del Nuevo Mundo/inmunología , Ensayo de Inmunoadsorción Enzimática/métodos , Datos de Secuencia Molecular , Sensibilidad y Especificidad , Tuberculosis/microbiología
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