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Host genetic variability can modulate infection resistance, although its role in infection clearance remains unclear. Hookworm disease (Uncinaria sp.) is the leading cause of pup mortality in several otariid species, although the parasite can be cleared through immune-mediated processes. We evaluated the association of host genetic diversity, body condition and immune response with hookworm resistance and/or clearance in the South American fur seal (Arctocephalus australis). Uninfected pups had higher heterozygosity than parasitized individuals, indicating a negative relationship between heterozygosity and the chances of infection. Likewise, pups that died of hookworm infection had lower heterozygosity than those that died of non-infectious causes. Interestingly, once infected, pups that survived hookworm infection had heterozygosities similar to pups that died of hookworm disease. However, pups that cleared the infection had a higher body mass and parasite-specific immunoglobulin G levels than those that did not recover or died of hookworm disease. Thus, although heterozygosity predicted resistance to and mortality from hookworm infections, it did not affect parasite clearance, which was facilitated by better body condition and adaptive immune responses. This demonstrates that host genetic variability and host-environment interactions influence disease dynamics, acting at different, well-defined stages of infection.

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Adenoviruses are medium size nonenveloped viruses with a trend of coevolution with their hosts. We surveyed South American fur seals (Arctocephalus australis) and Humboldt penguins (Spheniscus humboldti) for adenoviruses at two sites from 2009 to 2012. Despite the common pattern of host specificity, some of the adenoviruses in our study were present in samples from unexpected host species. We identified mastadenoviruses, aviadenoviruses, and siadenoviruses in A. australis from Peru and Chile and in S. humboldti from Peru. The El Niño Southern Oscillation (ENSO) significantly reduces the productivity of the Humboldt upwelling system, which can change trophic and other ecological interactions, facilitating exposure to new pathogens. One aviadenovirus was detected in both the penguins and the fur seals, an interclass distance. This finding occurred only during the 2009 ENSO and not in 2010 or 2012. Further studies of viral diversity in sites with high-density mixed species populations are necessary to better understand viral evolution and the effect of environmental change on viral evolution and host specificity.

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Entanglement of pinnipeds with plastic debris is an emerging conservation and animal welfare issue worldwide. However, the origins and long-term population level consequences of these entanglements are usually unknown. Plastic entanglement could produce a combination of wounds, asphyxiation, or inability to feed that results in the death of a certain percentage of individuals from the total population. In this research, we report on the consequent effect of plastic entanglement on population growth demographics in a South American fur seal (Arctocephalus australis australis) colony on Guafo Island, southern Chile. Using a stochastic matrix population model structured according to age and sex, and assuming an otherwise stable population, we explored population growth rates under five scenarios with differing rates of entanglement: A) a zero rate of plastic entanglement, B) entanglement rates (number of entangled individuals as a proportion of the total number of individuals) as observed in our study population (overall entanglement ratio of 1.2 × 10-3); and for the other scenarios, entanglement ratios as reported in the literature for other pinniped colonies around the world: C) 3.04 × 10-3, D) 4.42 × 10-2, and E) 8.39 × 10-2. Over the 30 years forecasting period and starting with a population size of ∼2950 individuals, the population growth rate was lower under all scenarios with rates of entanglement greater than zero (scenarios B-E). In comparison with scenario A, at the end of the 30-year period forecasted, we calculated a projected decrease in population size of between 20.34% (scenario B) and 91.38% (scenario E). These results suggest that even the lowest levels of entanglement in pinnipeds as reported in the literature might have significant effects over time on population-level dynamics. Our research offers potential insight when devising policy for the management and limitation of plastic pollution in the oceans, and indeed for the conservation and management policy of affected marine species. Furthermore, whilst there are some limitations to our methodology, it offers a straightforward and potentially useful approach for the standardized prediction of impacts at a population level of different rates of plastic pollution and entanglement and could be applied in distinct populations of the same species around the world.

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The aim of this study was to molecularly survey Bartonella spp. in rodents from the Valdivia Province, Southern Chile and from wild black rat-fleas in Guafo Island, Chilean Patagonia. Thrity-three spleens from synanthropic (Mus musculus, Rattus novergicus and Rattus rattus) and wild (Abrothrix longipilis, Oligoryzomys longicaudatus, Abrothrix sp.) rodents from Valdivia and 39 fleas/flea-pools (Plocopsylla sp. and Nosopsyllus sp.) from R. rattus in Guafo Island were obtained. All samples were screened by high-resolution melting (HRM) real-time PCR for Bartonella ITS locus (190 bp). ITS-Positive samples were further analyzed for two HRM real-time PCR assays targeting Bartonella rpoB (191 bp) and gltA (340 bp) gene fragments. All positive ITS, gltA and rpoB real-time PCR products were purified and sequenced. Bayesian inference trees were built for the gltA and rpoB gene fragments. Bartonella-ITS DNA was detected in 36.3% (12/33) [95% CI (22-53%)] of the tested rodents from Valdivia, being identified in all but O. longicaudatus rodent species captured in this study. ITS DNA was detected in 28% (11/39) [95% CI (16-43%)] of fleas/flea-pools from Guafo Island and identified in both Plocopsylla and Nosopsyllus genera. Sequencing and phylogenic analyses targeting three loci of Bartonella spp. allowed the identification of five genotypes in rodents from Southern Chile, potentially belonging to three different Bartonella spp. Those included Bartonella tribocorum identified from R. rattus, Bartonella rochalimae detected from Abrothix sp., and one novel genotype from uncharacterized Bartonella sp. identified in M. musculus, R. norvegicus, A. longipilis, and Abothrix sp., related to strains previously isolated in Phyllotis sp. from Peru. Additionally, two genotypes of B. tribocorum were identified in fleas from Guafo. In a nutshell, highly diverse and potentially zoonotic Bartonella spp. are described for the first time in wild and synanthropic rodents from Chile, and B. tribocorum was detected in wild back rat fleas from Guafo Island.

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Repeated reports of microplastic pollution in the marine pinniped diet have emerged in the last years. However, only few studies address the drivers of microplastics presence and the potential implications for monitoring microplastic pollution in the ocean. This study monitored their in the scats (N = 205) of four pinniped species/subspecies at five different locations in the southern Pacific Ocean (Peru and Chile). Samples from all rookeries contained microplastics, and overall, 68% of the examined scats contained fragments/fibers, mostly blue colored. We confirmed that 81.5% of the fragments/fibers were anthropogenic in origin , but only 30% were polymers. Scats from Juan Fernández Archipelago presented higher microplastic concentrations than continental rookeries. Also, the common diet in each location may influence the levels found in the samples. This study presents a useful non-invasive technique to track plastic pollution in top predator diets as bioindicators for future surveillance/management plans applied to different location.

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The tissues and parasites collected from Peruvian fur seals (Arctocephalus australis) and South American sea lions (Otaria byronia) found dead at Punta San Juan, Peru were examined. The respiratory mite, Orthohalarachne attenuata infected 3 out of 32 examined fur seals and 3 out of 8 examined sea lions, however caused moderate to severe lymphohistiocytic pharyngitis only in fur seals. Hookworms, Uncinaria sp, infected 6 of the 32 examined fur seals causing variable degrees of hemorrhagic and eosinophilic enteritis. This parasite caused the death of 2 of these pups. In fur seals and sea lions, Corynosoma australe and Contracaecum osculatum were not associated with significant tissue alterations in the intestine and stomach respectively. Respiratory mites and hookworms have the potential to cause disease and mortality among fur seals, while parasitic infections do not impact significatively the health of sea lions at Punta San Juan, Peru.

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A free-ranging, male, yearling Guadalupe fur seal ( Arctocephalus philippii townsendi) died due to multifocal verminous vasculitis with thrombosis and several embolic infarcts in liver, kidney, and brain. Nematodes extracted from lung blood vessels were identified as Parafilaroides decorus, a parasite normally found in alveoli of California sea lions ( Zalophus californianus).

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Although mites of the Orthohalarachne genus are common parasites of otariids, their role as agents of disease and in causing population-level mortality is unknown. In the austral summer of 2016, there was an increase in mortality among South American fur seal ( Arctocephalus australis) pups at Guafo Island, Northern Chilean Patagonia. Pups found dead or terminally ill had moderate to marked, multifocal, mucopurulent bronchopneumonia associated with large numbers of respiratory mites ( Orthohalarachne diminuata) and rare Gram-positive cocci. In lung areas less affected by bronchopneumonia, acute interstitial pneumonia with marked congestion and scant hemorrhage was evident. Bacteria from pups dying of bronchopneumonia were isolated and identified as Streptococcus marimammalium and Streptococcus canis. Respiratory mites obstructed airflow, disrupted airway epithelial lining, and likely facilitated the proliferation of pathogenic ß-hemolytic streptococci, leading to severe bronchopneumonia and death of fur seal pups. An abrupt increase in sea surface temperature in Guafo Island corresponded to the timing of the bronchopneumonia outbreak. The potential role of environmental factors in the fur seal pup mortality warrants further study.

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During five reproductive seasons, we documented the presence, extent and origin of perineal wounds in South American fur seal pups (Arctocephalus australis) on Guafo Island, Northern Chilean Patagonia. The seasonal prevalence of perineal wounds ranged from 5 to 9%, and new cases were more common at the end of the breeding season (February), when pups were on average two months old and were actively expelling hookworms (Uncinaria sp). Histologically, wounds corresponded to marked ulcerative lymphoplasmacytic and histiocytic dermatitis with granulation tissue and mixed bacterial colonies. In 2015 and 2017, kelp gulls (Larus dominicanus) and dolphin gulls (Leucophaeus scoresbii) were observed picking and wounding the perineal area of marked pups. This behaviour occurred more frequently after the pups' defecation, when sea gulls engaged in consumption of pups' faeces. The affected pups usually had moderate to marked hookworm infections along with bloody diarrhoea and anaemia. Pups with severe wounds (23% of affected animals) had swollen perineal areas and signs of secondary systemic bacterial infection. We propose that seagulls on Guafo Island have learned to consume remains of blood and parasites in the faeces of pups affected by hookworm infection, causing perineal wounds during this process. We conclude that this perineal wounding is an unintentional, occasional negative effect of an otherwise commensal gull-fur seal relationship.

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The complete mitochondrial DNA sequence of the South America fur seal (Arctocephalus australis) was obtained by a shotgun sequencing approach. The mitogenome is 16,372 bp in length and includes the genes coding for the two rRNA species (12S and 16S), 13 protein-coding genes, 22 transfer RNA genes, and a control region. The base composition is 33.0% for A, 26.7% for C, 26.1 for T and 14.2% for G, with an overall GC content of 40.9%. The description of this mitogenome will be useful for further phylogeny and genetic studies on Pinnipeds.

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Ectopic pregnancies have been rarely reported in animals and little is known in wildlife species regarding the capacity of the placenta to support extrauterine fetal development. An adult, female, free-ranging California sea lion (Zalophus californianus) died suddenly after four weeks in a rehabilitation center. At necropsy, a partially mummified fetus, covered by light-brown membranes occupied the lower third of the abdominal cavity. The maternal uterus was intact and a prominent corpus luteus enlarged the right ovary. The fetal membranes epithelium had immunohistochemical profile identical to normal sea lion placenta but was different from the staining profile of sea lion omentum. The findings in this case suggest that partial placentation occurred in the abdominal cavity, highlighting the potential of otariids placenta to support ectopic fetal development. Acute toxic shock with disseminated intravascular coagulation was considered the most likely cause of death of the adult female sea lion.

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Ectopic pregnancies have been rarely reported in animals and little is known in wildlife species regarding the capacity of the placenta to support extrauterine fetal development. An adult, female, free-ranging California sea lion (Zalophus californianus) died suddenly after four weeks in a rehabilitation center. At necropsy, a partially mummified fetus, covered by light-brown membranes occupied the lower third of the abdominal cavity. The maternal uterus was intact and a prominent corpus luteus enlarged the right ovary. The fetal membranes epithelium had immunohistochemical profile identical to normal sea lion placenta but was different from the staining profile of sea lion omentum. The findings in this case suggest that partial placentation occurred in the abdominal cavity, highlighting the potential of otariids placenta to support ectopic fetal development. Acute toxic shock with disseminated intravascular coagulation was considered the most likely cause of death of the adult female sea lion.(AU)

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The establishment of clinical pathology baseline data is critical to evaluate temporal and spatial changes in marine mammal groups. Despite increased availability of studies on hematology and biochemistry of marine mammals, reference ranges are lacking for many populations, especially among fur seal species. During the austral summers of 2014 and 2015, we evaluated basic hematologic and biochemical parameters in clinically healthy, physically restrained South American fur seal ( Arctocephalus australis ) lactating females and 2-mo-old pups. We also assessed the temporal variation of hematology parameters on the pups during their first 2 mo of life. Reference ranges of lactating females were similar to those previously reported in other fur seal species. In the case of pups, reference ranges are similar to values previously reported in sea lion species. As expected, most biochemical and hematologic values differ significantly between adult females and pups. As in other otariids, South American fur seals pups are born with higher values of total red blood cells, hemoglobin, and packed cell volume, and lower numbers of total leukocytes, neutrophils, lymphocytes, and eosinophils. To the best of our knowledge, data on hematology reference values for South American fur seals has not been previously reported and is useful for continued health monitoring of this species, as well as for comparisons with other otariid groups.

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We performed postmortem examination on four South American sea lions (Otaria byronia) from an urban colony in Valdivia, Chile. Chronic leptospirosis and suspected morbillivirus-like infection were diagnosed in one individual. Antibodies against Toxoplasma gondii and the zoonotic helminthes Contracaecum sp., Pseudoterranova sp., and Diphyllobothrium sp. were also detected.

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In the austral summer of 2011, in the rural area of Villarrica county, southern Chile (39 degrees 16'S, 72 degrees 19'W), seven black-faced ibis juveniles (approximately 4 mo old) were observed in the field with weakness; they were unable to follow the group and struggling to take flight. Three of these birds were euthanatized, and complete necropsies were performed. Gross examination showed severe infestation with Colpocephalum trispinum and Ardeicola melanopis lice, moderate emaciation, pale musculature, bursal atrophy, and severe hemorrhagic enteritis due to a heavy proventricular and intestinal infection with Porrocaecum heteropterum nematodes. Fungal pneumonia and severe lymphoid depletion on thymus, spleen, and bursa were diagnosed by microscopic examination. Bursal lesions included apoptosis and necrosis of lymphoid cells, and several cystic follicles. The presence of severe lymphoid depletion associated with fungal pneumonia and severe external and internal parasite infections suggest the presence of an immunosuppressive syndrome in these birds that caused the death of several black-faced ibis juveniles in southern Chile during the summer of 2011.

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A subadult male Chimango Caracara (Milvago chimango temucoensis) was found in an agricultural beef cattle field of Southern Chile. The bird was non-responsive to visual or auditory stimulation, and unable to fly. Clinical examination showed moderate body condition, partial blindness and a left wing fracture. The bird was euthanized and a complete necropsy was performed. The most important macroscopic findings were a complete left radius fracture, a subcutaneous hematoma over the occipital bone region and the complete loss of structure of the left pallium and striatum of the telencephalon. Necrotic areas of greenish discoloration in the caudal telencephalon were observed. Histologically, the brain had wide areas of liquefactive necrosis surrounded by abundant inflammatory infiltrate. Escherichia coli was isolated from the affected areas of the brain. Although bacterial encephalitis is uncommon among free ranging birds, it should be considered as a candidate diagnosis in wild birds with neurological signs.(AU)

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A subadult male Chimango Caracara (Milvago chimango temucoensis) was found in an agricultural beef cattle field of Southern Chile. The bird was non-responsive to visual or auditory stimulation, and unable to fly. Clinical examination showed moderate body condition, partial blindness and a left wing fracture. The bird was euthanized and a complete necropsy was performed. The most important macroscopic findings were a complete left radius fracture, a subcutaneous hematoma over the occipital bone region and the complete loss of structure of the left pallium and striatum of the telencephalon. Necrotic areas of greenish discoloration in the caudal telencephalon were observed. Histologically, the brain had wide areas of liquefactive necrosis surrounded by abundant inflammatory infiltrate. Escherichia coli was isolated from the affected areas of the brain. Although bacterial encephalitis is uncommon among free ranging birds, it should be considered as a candidate diagnosis in wild birds with neurological signs.