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1.
Mycobiology ; 49(2): 122-132, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-37970183

RESUMEN

The reexamination of the fungal genus Botryosphaeria on 12 plant species of 10 families was carried out based on molecular phylogenetic analyses using the regions of translation elongation factor 1-α, ß-tubulin, DNA-directed RNA polymerase II subunit, and internal transcribed spacer region of rDNA and morphological characteristics. Japanese isolates were divided into five clades and include Botryosphaeria dothidea, B. qingyuanensis, B. sinensis, and Botryosphaeria spp. Two species, B. qingyuanensis and B. sinensis have been newly added to the Japanese mycoflora, but their host plants are not specified. Botryosphaeria tenuispora isolated from Leucothoe fontanesiana and insect galls on fruits of Aucuba japonica has been proposed as a new species.

2.
Virus Genes ; 54(1): 149-154, 2018 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-28986679

RESUMEN

Pyrus pyrifolia cryptic virus (PpCV) had been previously reported from Japanese pear (Pyrus pyrifolia). In analyses of Japanese pear, two other double-stranded (ds) RNA molecules (dsRNA4 and 5) were observed along with the three dsRNA segments from PpCV on an electrophoretic profile of isolated dsRNA. When the purified dsRNA sample was deep sequenced by a next-generation sequencer, two de novo assembled contigs corresponding to dsRNA4 and 5, with predicted amino acid sequences showing homologies to the RNA-dependent RNA polymerase and the capsid protein of Rose partitivirus, respectively, were found by BLAST analysis. The relationships between the two contigs and dsRNA4, 5 were confirmed by northern blot analyses with probes amplified using primers designed from the contigs. Terminal sequence analyses by rapid amplification of cDNA ends revealed that dsRNA4 and 5 were 1945 and 1788 bp long, respectively. The 5' terminal sequences (GUCAAAUU) of dsRNA4 and 5 were conserved. Based on genome size and phylogenetic analyses, the newly found virus is thought to be a member of the genus Alphapartitivirus. Thus, it has been designated as Pyrus pyrifolia partitivirus 2.


Asunto(s)
Virus de Plantas/clasificación , Virus de Plantas/aislamiento & purificación , Pyrus/virología , Virus ARN/clasificación , Virus ARN/aislamiento & purificación , Northern Blotting , Secuencia Conservada , Secuenciación de Nucleótidos de Alto Rendimiento , Japón , Filogenia , Virus de Plantas/genética , Virus ARN/genética , ARN Polimerasa Dependiente del ARN/genética , Análisis de Secuencia de ADN , Homología de Secuencia de Aminoácido , Proteínas Virales/genética
3.
Virus Res ; 240: 64-68, 2017 08 15.
Artículo en Inglés | MEDLINE | ID: mdl-28760347

RESUMEN

According to previous studies, three double-stranded (ds) RNA molecules (dsRNA1, 2, and 3) detected in Japanese pear are transmitted to the next generation with high frequency through both ovules and pollen. Nucleotide sequence analysis of dsRNA1-encoding RNA-dependent RNA polymerase (RdRp) has suggested that these dsRNAs are related to a cryptovirus named Pyrus pyrifolia cryptic virus (PpCV). In this study, purified dsRNA prepared from a PpCV-infected Japanese pear cultivar was subjected to next-generation deep sequencing. This sequencing generated two de novo assembled contigs corresponding to dsRNA2 and 3, with BLAST analysis of the predicted amino acid sequences indicating homology to capsid proteins (CPs) of the cryptoviruses persimmon cryptic virus and Sinapis alba cryptic virus 1, respectively. Relationships between the two contigs and dsRNA2 and 3 were confirmed by northern blot hybridization with probes generated using primers designed from the assembled contigs. Rapid amplification of cDNA ends analyses of 5'- and 3'-terminal sequences of dsRNA2 and 3 revealed that these two dsRNAs consist of 1523 and 1481bp, respectively. The 5'-terminal sequences (AGAAUUUC) of dsRNA1, 2 and 3 were found to be conserved. Phylogenetic analysis of deduced amino acid sequences of the two CP-like variants indicated that PpCV belongs to Deltapartitivirus (Partitiviridae). Our results imply that PpCV is tri-segmented.


Asunto(s)
Proteínas de la Cápside/genética , Genoma Viral , Enfermedades de las Plantas/virología , Pyrus/virología , Virus ARN/aislamiento & purificación , Proteínas de la Cápside/metabolismo , Secuenciación de Nucleótidos de Alto Rendimiento , Filogenia , Virus ARN/clasificación , Virus ARN/genética , ARN Viral/genética , ARN Viral/metabolismo
4.
Virus Genes ; 52(6): 835-847, 2016 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-27550368

RESUMEN

Many bands were detected on an electrophoretic profile of double-stranded (ds) RNA preparation from a single strain of Fusarium poae isolated from wheat. When the purified dsRNA sample was deep-sequenced by a next-generation sequencer, sixteen virus-like assembled contigs with predicted amino acid sequences showing homologies to respective viral RNA-dependent RNA polymerases (RdRps) were found by BLAST analysis. Fourteen out of sixteen sequences showed homologies to RdRps of known mycoviruses, that is, four mitoviruses, two narnaviruses, two partitiviruses, an alternavirus, a fusarivirus, a hypovirus, a victorivirus, and two unclassified mycoviruses, Sclerotinia sclerotiorum dsRNA mycovirus-L and Aspergillus foetidus slow virus 2, respectively. The other two putative viral RdRp sequences showed homologies to those of members of negative-stranded RNA viruses, the Ophiovirus and the Phlebovirus respectively, which mycoviruses had been not ever assigned to. Based on genome structure and phylogenetic analysis, both viruses were thought to be members of novel respective negative-stranded RNA virus groups. The presences of all sixteen viral RdRp sequences identified by BLAST analysis were confirmed by sequencing RT-PCR products generated from the starting dsRNA material using primers designed from the de novo assembled sequences of respective putative mycoviruses. Since the single strain of F. poae was considered to be multiply infected with mycoviruses from novel taxonomical groups in addition to many common mycoviruses, the RNA virome of the strain was found to be highly diverse.


Asunto(s)
Fusarium/virología , Secuenciación de Nucleótidos de Alto Rendimiento , Virus ARN/genética , Biología Computacional , Virus Fúngicos/clasificación , Virus Fúngicos/genética , Genoma Viral , Filogenia , Virus ARN/clasificación , ARN Bicatenario , ARN Viral , Análisis de Secuencia de ADN , Triticum/microbiología
5.
Virus Res ; 219: 73-82, 2016 07 02.
Artículo en Inglés | MEDLINE | ID: mdl-26718720

RESUMEN

A new virus termed Rosellinia necatrix megabirnavirus 2 (RnMBV2) was molecularly and biologically characterized. RnMBV2 was originally harbored in isolate W8 of R. necatrix co-infected with the previously reported virus Rosellinia necatrix partitivirus 1 (RnPV1). RnMBV2 has molecular features similar and different from precedent megabirnaviruses, Rosellinia necatrix megabirnavirus 1 (RnMBV1) and Sclerotinia sclerotiorum megabirnavirus 1 (SsMBV1). The two genomic segments of RnMBV2 (9.0-kbp dsRNA1 and 8.0-kbp dsRNA2) each possess two open reading frames (ORF1 and 2 on dsRNA1 and ORF3 and 4 on dsRNA2), with a well conserved 5'-long untranslated region (UTR) of 1.7-1.8kb between the segments, and relatively short 3'-UTR. The RnMBV2 dsRNA1-coded capsid protein (CP) and RNA-dependent RNA polymerase (RdRp) show higher sequence identity to those of SsMBV1 than to those of RnMBV1, whereas the RnMBV2 ORF3-coded protein is more closely related to the counterpart of RnMBV1. No significant amino acid sequence similarity was detected among ORF4-coded sequences of the three megabirnaviruses. Virion transfection and co-culturing allowed for single and double infection of mycelial incompatible isolates W37 and W97 by RnMBV2 and/or RnPV1. Their comparative analyses showed RnMBV2 to be able to confer hypovirulence with the aid of a co-infecting RnPV1, while the individual viruses exhibited asymptomatic infections. Interestingly, RnPV1 accumulation appeared to be increased in co-infected fungal strain with two segments of RnMBV2 relative to singly infected fungal strains. Furthermore, the dispensability of RnMBV2 dsRNA2 was demonstrated to be similar to that of the other two megabirnaviruses.


Asunto(s)
Ascomicetos/virología , Coinfección , Virus Fúngicos/clasificación , Virus Fúngicos/fisiología , Interacciones Huésped-Patógeno , Filogenia , ARN Viral , Simbiosis , Virulencia
6.
Virus Genes ; 50(3): 466-73, 2015 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-25687123

RESUMEN

The filamentous fungus Fusarium spp. includes several important plant pathogens. We attempted to reveal presence of double-stranded (ds) RNAs in the genus. Thirty-seven Fusarium spp. at the MAFF collection were analyzed. In the strains of Fusarium coeruleum, Fusarium globosum and Fusarium solani f. sp. pisi, single dsRNA bands were detected. The strains of F. coeruleum and F. solani f. sp. pisi cause potato dry rot and mulberry twig blight, respectively. Sequence analyses revealed that dsRNAs in F. coeruleum and F. globosum consisted of 2423 and 2414 bp, respectively. Using the fungal mitochondrial translation table, the positive strands of these cDNAs were found to contain single open reading frames with the potential to encode a protein of putative 757 and 717 amino acids (molecular mass 88.5 and 84.0 kDa, respectively), similar to RNA-dependent RNA polymerases of members of the genus Mitovirus. These dsRNAs in F. coeruleum and F. globosum were assigned to the genus Mitovirus (family Narnaviridae), and these two mitoviruses were designated as Fusarium coeruleum mitovirus 1 and Fusarium globosum mitovirus 1. On the other hand, a positive strand of cDNA (1950 bp) from dsRNA in F. solani f. sp. pisi contained an ORF potentially encoding a putative RdRp of 608 amino acids (72.0 kDa). The putative RdRp was shown to be related to those of members of the genus of Alphapartitivirus (family Partitiviridae). We coined the name Fusarium solani partitivirus 2 for dsRNA in F. solani f. sp. pisi.


Asunto(s)
Fusarium/virología , Virus ARN/genética , Virus ARN/aislamiento & purificación , ARN Bicatenario/genética , ARN Viral/genética , Análisis por Conglomerados , Fusarium/aislamiento & purificación , Modelos Moleculares , Datos de Secuencia Molecular , Conformación de Ácido Nucleico , Sistemas de Lectura Abierta , Enfermedades de las Plantas/microbiología , Análisis de Secuencia de ADN , Homología de Secuencia
7.
Virology ; 450-451: 308-15, 2014 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-24503094

RESUMEN

Rosellinia necatrix megabirnavirus 1 (RnMBV1) is a bi-segmented double-stranded RNA mycovirus that reduces the virulence of the fungal plant pathogen R. necatrix. We isolated strains of RnMBV1 with genome rearrangements (RnMBV1-RS1) that retained dsRNA1, encoding capsid protein (ORF1) and RNA-dependent RNA polymerase (ORF2), and had a newly emerged segment named dsRNAS1, but with loss of dsRNA2, which contains two ORFs of unknown function. Analyses of two variants of dsRNAS1 revealed that they both originated from dsRNA1 by deletion of ORF1 and partial tandem duplication of ORF2, retaining a much shorter 5' untranslated region (UTR). R. necatrix transfected with RnMBV-RS1 virions showed maintenance of virulence on host plants compared with infection with RnMBV1. This suggests that dsRNAS1 is able to be transcribed and packaged, as well as suggesting that dsRNA2, while dispensable for virus replication, is required to reduce the virulence of R. necatrix.


Asunto(s)
Genoma Viral , Malus/microbiología , Enfermedades de las Plantas/microbiología , Virus ARN/genética , Recombinación Genética , Xylariales/patogenicidad , Xylariales/virología , Virus ARN/clasificación , Virus ARN/fisiología , Virulencia , Replicación Viral , Xylariales/fisiología
8.
Appl Environ Microbiol ; 79(12): 3684-91, 2013 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-23563943

RESUMEN

Heterogenic incompatibility is considered a defense mechanism against deleterious intruders such as mycovirus. Rosellinia necatrix shows strong heterogenic incompatibility. In the heterogenic incompatibility reaction, the approaching hyphae hardly anastomosed, a distinctive barrage line formed, and green fluorescent protein (GFP)-labeled hyphae quickly lost their fluorescence when encountering incompatible hyphae. In this study, transmission of a hypovirulence-conferring mycovirus to strains with different genetic backgrounds was attempted. Various chemical reagents considered to affect the programmed cell death pathway or cell wall modification were examined. Treatment with zinc compounds was shown to aid in transmission of mycoviruses to strains with different genetic backgrounds. In incompatible pairings, treatment with zinc compounds accelerated hyphal anastomosis; moreover, cytosolic GFP was transmitted to the newly joined hyphae. These results suggest that zinc compounds not only increase hyphal anastomosis but also attenuate heterogenic incompatibility.


Asunto(s)
Técnicas de Transferencia de Gen , Hifa/fisiología , Virus ARN/fisiología , Internalización del Virus/efectos de los fármacos , Xylariales/virología , Compuestos de Zinc/farmacología , Cartilla de ADN/genética , Hifa/efectos de los fármacos , Microscopía Electrónica de Transmisión , Microscopía Fluorescente , Virus ARN/aislamiento & purificación , Xylariales/ultraestructura
9.
FEMS Microbiol Ecol ; 83(1): 49-62, 2013 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-22808916

RESUMEN

In general, mycoviruses are transmitted through hyphal anastomosis between vegetatively compatible strains of the same fungi, and their entire intracellular life cycle within host fungi limits transmission to separate species and even to incompatible strains belonging to the same species. Based on field observations of the white root rot fungus, Rosellinia necatrix, we found two interesting phenomena concerning mycovirus epidemiology. Specifically, apple trees in an orchard were inoculated with one or two R. necatrix strains that belonged to different mycelial compatibility groups (MCGs), strains W563 (virus-free, MCG139) and NW10 (carrying a mycovirus-like double-stranded (ds) RNA element (N10), MCG442). Forty-two sub-isolates of R. necatrix, which were retrieved 2-3 years later, were all genetically identical to W563 or NW10: however, 22 of the sub-isolates contained novel dsRNAs. Six novel dsRNAs (S1-S6) were isolated: S1 was a new victorivirus; S2, S3, and S4 were new partitiviruses; and S5 and S6 were novel viruses that could not be assigned to any known mycovirus family. N10 dsRNA was detected in three W563 sub-isolates. These findings indicated that novel mycoviruses, from an unknown source, were infecting strains W563 and NW10 of R. necatrix in the soil, and that N10 dsRNA was being transmitted between incompatible strains, NW10 to W563.


Asunto(s)
Virus ARN/aislamiento & purificación , ARN Bicatenario/aislamiento & purificación , ARN Viral/aislamiento & purificación , Microbiología del Suelo , Xylariales/virología , Análisis del Polimorfismo de Longitud de Fragmentos Amplificados , Biblioteca de Genes , Genotipo , Malus/microbiología , Raíces de Plantas/microbiología , Virus ARN/clasificación , Virus ARN/genética , Xylariales/genética
10.
Virology ; 426(1): 42-50, 2012 Apr 25.
Artículo en Inglés | MEDLINE | ID: mdl-22321722

RESUMEN

Here we report the biological and molecular attributes of a novel dsRNA virus isolated from Rosellinia necatrix, a filamentous phytopathogenic fungus. The virus, termed Rosellinia necatrix quadrivirus 1 (RnQV1), forms rigid spherical particles approximately 45 nm in diameter in infected mycelia. The particles contain 4 dsRNA segments, dsRNA1 to dsRNA4, with a size range of 4.9 to 3.7 kbp, each possessing a single large ORF. A comparison of the virus-infected and -cured isogenic fungal strains suggested that RnQV1 infection has no appreciable phenotypic effects. Phylogenetic analysis using the dsRNA3-encoded RdRp sequence revealed that RnQV1 is more distantly related to quadripartite chrysoviruses than to monopartite totiviruses, and is placed in a distinct group from other mycoviruses. No significant sequence similarities were evident between known proteins and RnQV1 structural proteins shown to be encoded by dsRNA2 or dsRNA4. These suggest that RnQV1 is a novel latent virus, belonging to a new family.


Asunto(s)
Enfermedades de las Plantas/microbiología , Virus ARN/aislamiento & purificación , Xylariales/virología , Secuencia de Aminoácidos , Secuencia de Bases , Datos de Secuencia Molecular , Filogenia , Pyrus/microbiología , Virus ARN/química , Virus ARN/clasificación , Virus ARN/genética , Alineación de Secuencia , Proteínas Virales/química , Proteínas Virales/genética , Xylariales/aislamiento & purificación , Xylariales/fisiología
11.
Phytopathology ; 100(9): 922-30, 2010 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-20701490

RESUMEN

The potential host range of mycoviruses is poorly understood because of the lack of suitable inoculation methods. Recently, successful transfection has been reported for somatically incompatible fungal isolates with purified virus particles of two mycoviruses, the partitivirus RnPV1-W8 (RnPV1) and the mycoreovirus RnMyRV3/W370 (MyRV3), from the white root rot fungus Rosellinia necatrix (class Sordariomycetes, subclass Xylariomycetidae). These studies examined and revealed the effect of the mycoviruses on growth and pathogenicity of R. necatrix. Here, we extended the experimental host range of these two mycoviruses using a transfection approach. Protoplasts of other phytopathogenic Sordariomycetous fungi-Diaporthe sp., Cryphonectria parasitica, Valsa ceratosperma (Sordariomycetidae), and Glomerella cingulata (Hypocreomycetidae)-were inoculated with RnPV1 and MyRV3 viral particles. The presence of double-stranded RNA viral genomes in regenerated mycelia of Diaporthe sp., C. parasitica, and V. ceratosperma confirmed both types of viral infections in these three novel host species. An established RnPV1 infection was confirmed in G. cingulata but MyRV3 did not infect this host. Horizontal transmission of both viruses from newly infected strains to virus-free, wild-type strains through hyphal anastomosis was readily achieved by dual culture; however, vertical transmission through conidia was rarely observed. The virulence of Diaporthe sp., C. parasitica, and V. ceratosperma strains harboring MyRV3 was reduced compared with their virus-free counterpart. In summary, our protoplast inoculation method extended the experimental host range of RnPV1-W8 and MyRV3 within the class Sordariomycetes and revealed that MyRV3 confers hypovirulence to the new hosts, as it does to R. necatrix.


Asunto(s)
Ascomicetos/virología , Protoplastos/virología , Reoviridae/fisiología , Interacciones Huésped-Patógeno , Reoviridae/patogenicidad , Transfección , Virulencia
12.
Nat Protoc ; 5(6): 1051-60, 2010 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-20539281

RESUMEN

The cell is a crowded environment in which proteins interact specifically with other proteins, nucleic acids, cofactors and ligands. Atomic resolution structural explanation of proteins functioning in this environment is a main goal of biochemical research. Recent improvements to nuclear magnetic resonance (NMR) hardware and methodology allow the measurement of high-resolution heteronuclear multidimensional NMR spectra of macromolecules in living cells (in-cell NMR). In this study, we describe a protocol for the stable isotope ((13)C, (15)N and (2)H) labeling and structure determination of proteins overexpressed in Escherichia coli cells exclusively on the basis of information obtained in living cells. The protocol combines the preparation of the protein in E. coli cells, the rapid measurement of the three-dimensional (3D) NMR spectra by nonlinear sampling of the indirectly acquired dimensions, structure calculation and structure refinement. Under favorable circumstances, this in-cell NMR approach can provide high-resolution 3D structures of proteins in living environments. The protocol has been used to solve the first 3D structure of a protein in living cells for the putative heavy metal-binding protein TTHA1718 from Thermus thermophilus HB8 overexpressed in E. coli cells. As no protein purification is necessary, a sample for in-cell NMR measurements can be obtained within 2-3 d. With the nonlinear sampling scheme, the duration of each 3D experiment can be reduced to 2-3 h. Once chemical shift assignments and NOESY peak lists have been prepared, structure calculation with the program CYANA and energy refinement can be completed in less than 1 h on a powerful computer system.


Asunto(s)
Escherichia coli/química , Resonancia Magnética Nuclear Biomolecular/métodos , Proteínas/química , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Isótopos de Carbono , Simulación por Computador , Escherichia coli/genética , Modelos Moleculares , Isótopos de Nitrógeno , Conformación Proteica , Proteínas/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Programas Informáticos , Thermus thermophilus/química , Thermus thermophilus/genética
13.
J Virol ; 83(24): 12801-12, 2009 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-19828620

RESUMEN

White root rot, caused by the ascomycete Rosellinia necatrix, is a devastating disease worldwide, particularly in fruit trees in Japan. Here we report on the biological and molecular properties of a novel bipartite double-stranded RNA (dsRNA) virus encompassing dsRNA-1 (8,931 bp) and dsRNA-2 (7,180 bp), which was isolated from a field strain of R. necatrix, W779. Besides the strictly conserved 5' (24 nt) and 3' (8 nt) terminal sequences, both segments show high levels of sequence similarity in the long 5' untranslated region of approximately 1.6 kbp. dsRNA-1 and -2 each possess two open reading frames (ORFs) named ORF1 to -4. Although the protein encoded by 3'-proximal ORF2 on dsRNA-1 shows sequence identities of 22 to 32% with RNA-dependent RNA polymerases from members of the families Totiviridae and Chrysoviridae, the remaining three virus-encoded proteins lack sequence similarities with any reported mycovirus proteins. Phylogenetic analysis showed that the W779 virus belongs to a separate clade distinct from those of other known mycoviruses. Purified virions approximately 50 nm in diameter consisted of dsRNA-1 and -2 and a single major capsid protein of 135 kDa, which was shown by peptide mass fingerprinting to be encoded by dsRNA-1 ORF1. We developed a transfection protocol using purified virions to show that the virus was responsible for reduction of virulence and mycelial growth in several host strains. These combined results indicate that the W779 virus is a novel bipartite dsRNA virus with potential for biological control (virocontrol), named Rosellinia necatrix megabirnavirus 1 (RnMBV1), that possibly belongs to a new virus family.


Asunto(s)
Ascomicetos/virología , Control Biológico de Vectores , Virus ARN/genética , ARN Bicatenario/genética , Secuencias de Aminoácidos , Secuencia de Aminoácidos , Ascomicetos/crecimiento & desarrollo , Ascomicetos/patogenicidad , Secuencia de Bases , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Virus ARN/química , Virus ARN/clasificación , ARN Bicatenario/química , Transfección , Virión/genética
14.
J Infect Chemother ; 15(2): 99-103, 2009 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-19396519

RESUMEN

The purpose of this study was to clarify whether inhaled corticosteroids (ICSs) increased the infectious load of Chlamydophila pneumoniae and/or Mycoplasma pneumoniae in the respiratory tracts of asthmatic children. We studied a total of 310 outpatients with chronic stable asthma. Real-time polymerase chain reaction (PCR)-positive results for C. pneumoniae were obtained in 21 of 310 (6.8%) throat samples and 21 of 293 (7.2%) nasopharyngeal samples. There was no significant difference in the rate of detection or in the quantity of detection for C. pneumoniae between the ICS group and the non-ICS group, nor were there differences among groups classified by Japanese pediatric guidelines (JPGL) severity criteria. Real-time PCR-positive results for M. pneumoniae were obtained in 60 of 310 (19.4%) throat samples and 49 of 293 (16.7%) nasopharyngeal samples. There was no significant difference in the rate of detection or the quantity of detection between the ICS group and the non-ICS group, nor were there differences among age groups. The results of this research do not support the hypothesis that ICSs influence the infectious load of C. pneumoniae and M. pneumoniae. ICSs did not increase C. pneumoniae or M. pneumoniae infection in the upper respiratory tract, in contrast to the effect of ICSs in causing oral candidiasis. Our data exclude the concern that there is an increase in C. pneumoniae and M. pneumoniae infections due to ICS use, the use of ICSs being the gold standard in the long-term anti-inflammatory treatment of persistent asthma in children and adults.


Asunto(s)
Corticoesteroides/administración & dosificación , Antiasmáticos/administración & dosificación , Asma/tratamiento farmacológico , Chlamydophila pneumoniae/efectos de los fármacos , Mycoplasma pneumoniae/efectos de los fármacos , Faringe/microbiología , Administración por Inhalación , Adolescente , Corticoesteroides/farmacología , Corticoesteroides/uso terapéutico , Antiasmáticos/farmacología , Antiasmáticos/uso terapéutico , Distribución de Chi-Cuadrado , Niño , Preescolar , Chlamydophila pneumoniae/genética , Chlamydophila pneumoniae/aislamiento & purificación , Femenino , Humanos , Lactante , Masculino , Mycoplasma pneumoniae/genética , Mycoplasma pneumoniae/aislamiento & purificación , Nasofaringe/microbiología , Reacción en Cadena de la Polimerasa
15.
Mycologia ; 101(1): 84-94, 2009.
Artículo en Inglés | MEDLINE | ID: mdl-19271671

RESUMEN

Rosellinia compacta is described as a new species that was discovered during a study of variation in Rosellinia necatrix in Japan using morphological and molecular characters. Rosellinia necatrix stromata and ascospores were 0.92-2.43 x 1.16-1.98 mm (mean 1.75 x 1.57 mm) and 30.5-55.9 x 5.0-10.3 microm (mean 41.8 x 6.9 microm) respectively. Rosellinia compacta had smaller stromata (1.13-1.71 x 0.99-1.36 mm; mean 1.43 x 1.16 mm) and longer ascospores ([34.0-]44.2-62.5 x 5.0-10.9 microm; mean 52.2 x 7.5 microm) than R. necatrix and also differs from other described species of Rosellinia.


Asunto(s)
Ascomicetos/clasificación , Raíces de Plantas/microbiología , Análisis de Varianza , Ascomicetos/genética , Ascomicetos/aislamiento & purificación , Ascomicetos/patogenicidad , Análisis por Conglomerados , ADN Espaciador Ribosómico/genética , Hifa/citología , Japón , Filogenia , Análisis de Secuencia , Especificidad de la Especie , Esporas Fúngicas/citología
16.
Nature ; 458(7234): 102-5, 2009 Mar 05.
Artículo en Inglés | MEDLINE | ID: mdl-19262674

RESUMEN

Investigating proteins 'at work' in a living environment at atomic resolution is a major goal of molecular biology, which has not been achieved even though methods for the three-dimensional (3D) structure determination of purified proteins in single crystals or in solution are widely used. Recent developments in NMR hardware and methodology have enabled the measurement of high-resolution heteronuclear multi-dimensional NMR spectra of macromolecules in living cells (in-cell NMR). Various intracellular events such as conformational changes, dynamics and binding events have been investigated by this method. However, the low sensitivity and the short lifetime of the samples have so far prevented the acquisition of sufficient structural information to determine protein structures by in-cell NMR. Here we show the first, to our knowledge, 3D protein structure calculated exclusively on the basis of information obtained in living cells. The structure of the putative heavy-metal binding protein TTHA1718 from Thermus thermophilus HB8 overexpressed in Escherichia coli cells was solved by in-cell NMR. Rapid measurement of the 3D NMR spectra by nonlinear sampling of the indirectly acquired dimensions was used to overcome problems caused by the instability and low sensitivity of living E. coli samples. Almost all of the expected backbone NMR resonances and most of the side-chain NMR resonances were observed and assigned, enabling high quality (0.96 ångström backbone root mean squared deviation) structures to be calculated that are very similar to the in vitro structure of TTHA1718 determined independently. The in-cell NMR approach can thus provide accurate high-resolution structures of proteins in living environments.


Asunto(s)
Proteínas Bacterianas/química , Escherichia coli/citología , Escherichia coli/metabolismo , Resonancia Magnética Nuclear Biomolecular/métodos , Thermus thermophilus/genética , Proteínas Bacterianas/genética , Escherichia coli/genética , Genes Bacterianos/genética , Thermus thermophilus/química
17.
Phytopathology ; 97(3): 278-86, 2007 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-18943646

RESUMEN

ABSTRACT Rosellinia necatrix mycoreovirus 3 (W370) (RnMYRV-3/W370, described as RnMYRV-3 in this paper), a member of the newly established genus Mycoreovirus within the family Reoviridae, is the hypovirulence factor of the white root rot fungus, Rosellinia necatrix. Two virus-free fungal isolates (W37 and W97) that were somatically incompatible with the virus-harboring field isolate (W370) were transfected with purified RnMYRV-3 particles. Virus infection was confirmed by electrophoresis and northern hybridization of viral double-stranded RNA. RnMYRV-3 was transmissible from transfected strains to their respective, virus-free counterparts via hyphal anastomosis. Virus-transfected strains produced smaller lesions on apple fruits than did their virus-free counterparts. Virus-cured strains were indistinguishable from wild-type strains in culture morphology and displayed approximately the same virulence level on apples. Virus-transfected strains had "mosaic" colony portions consisting of thin, fast-growing and dense, slow-growing mycelia, and grew more slowly as a whole than their virus-free, parental strains. The level of virus accumulation varied among virus-transfected subcultures and within its single colonies. Virus-transfected strains were occasionally cured, as was W370. Such a phenomenon may be ascribed to uneven viral distribution in single colonies and the difficulty in viral transmission to virus-free hyphae.

18.
Masui ; 55(9): 1155-7, 2006 Sep.
Artículo en Japonés | MEDLINE | ID: mdl-16984014

RESUMEN

BACKGROUND: When the applied cricoid pressure is too strong, or the place or direction of the pressure application is not appropriate, glottal closure may occur, but its details are unclear. METHODS: We evaluated possible changes in the size of the rima glottides due to backward pressure on the cricoid cartilage or backward pressure or backward, upward, and rightward pressure (BURP) on the thyroid cartilage using a video laryngoscope (Fine View' Laryngoscope, Tray Medical, Tokyo) in 6 adult males and 6 females with Cormack and Lehane grade 1. RESULTS: The right-to-left distance of the rima glottides was 5.1 +/- 1.2 mm without pressure application but was reduced to 3.8 +/- 1.7, 3.5 +/- 1.8, 2.8 +/- 1.9, 2.4 +/- 1.8, and 2.6 +/- 1.2 mm by 20 N and 30 N backward pressure on the cricoid cartilage and 20 N and 30 N backward pressure and BURP on the thyroid cartilage, respectively. Compared with the absence of pressure application, 20 N and 30 N backward pressure and BURP on the thyroid cartilage significantly reduced it. It was reduced to 1 mm by 30 N backward cricoid pressure in 1 patient while glottal closure occurred due to 30 backward thyroid pressure in 1 patient. CONCLUSIONS: The right-to-left distance of the rima glottides was significantly reduced by backward pressure or BURP on the thyroid cartilage, and was also markedly reduced by cricoid pressure in 1 of the 12 patients.


Asunto(s)
Cartílago Cricoides/fisiología , Glotis/patología , Laringoscopía , Laringoestenosis/etiología , Laringoestenosis/patología , Presión/efectos adversos , Grabación en Video , Adulto , Anciano , Femenino , Humanos , Intubación Intratraqueal/efectos adversos , Masculino , Persona de Mediana Edad , Neumonía por Aspiración/etiología , Neumonía por Aspiración/prevención & control
19.
Virus Res ; 118(1-2): 143-9, 2006 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-16417937

RESUMEN

We determined the complete nucleotide (nt) sequence (16,614 nt) of a large double-stranded (ds) RNA (referred to as L1 dsRNA), previously identified as the hypovirulence factor from strain V670 of the violet root rot fungus, Helicobasidium mompa. The positive-strand of L1 dsRNA contained a long open reading frame (ORF) potentially encoding a protein of 5,373 amino acids (molecular mass 603,080 Da) with conserved motifs characteristic of RNA-dependent RNA polymerase (RdRp) and helicase. The ORF is the longest so far reported in the fungal kingdom. The putative RdRp and helicase were shown to be related to putative RdRps and helicases of members of the genus Endornavirus. As is the case with endornaviruses, the coding (sense) strand of L1 dsRNA contained a discontinuity (nick) at nt position 2,552. A region between the RdRp and helicase domains of the polyprotein also had an amino acid sequence, resembling UDP glycosyltransferases (UGTs) in Oryza sativa endornavirus and Phytophthora endornavirus 1. Regions in the L1 dsRNA-encoded protein presumed to contain putative helicase, UGT and RdRp motifs were present at comparable positions to those in other endornaviruses. L1 dsRNA of H. mompa strain V670 was assigned to the genus Endornavirus, and here, we designate it as H. mompa endornavirus 1-670 (HmEV1-670). This represents the first report of a fungal endornavirus whose complete nucleotide sequence has been determined.


Asunto(s)
Basidiomycota/virología , Virus ARN/aislamiento & purificación , ARN Bicatenario/genética , Secuencias de Aminoácidos/genética , Secuencia de Aminoácidos , Secuencia de Bases , Orden Génico , Genoma Viral , Glicosiltransferasas/genética , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Filogenia , ARN Helicasas/genética , Virus ARN/genética , Virus ARN/patogenicidad , ARN Bicatenario/aislamiento & purificación , ARN Polimerasa Dependiente del ARN/genética , Alineación de Secuencia , Análisis de Secuencia de ADN , Homología de Secuencia , Sintenía
20.
Masui ; 54(8): 875-80, 2005 Aug.
Artículo en Japonés | MEDLINE | ID: mdl-16104540

RESUMEN

Continuous epidural administration of droperidol at 2.5 mg x day(-1) or less was performed in 837 patients after surgery. In 4 of these patients, an extrapyramidal reaction occurred. Patient 1 was a 10-year-old girl who developed the symptom 29 hours after the start of administration, with a total dose of 3.0 mg. Patient 2 was a 16-year-old girl in whom the symptom occurred 24 hours after the start, with a total of 5.3 mg. Patient 3 was a 22-year-old female with the symptom occurring 26 hours after the start, with a total of 5.2 mg. Patient 4 was a 74-year-old female in whom the symptom occurred 24 hours after the start, with a total of 1.3 mg. With respect to the age distribution, the total of 837 patients consisted of 16 patients aged 10 to 19 years, 85 patients aged 20 to 29 years, 91 patients aged 30 to 39 years, 90 patients aged 40 to 49 years, 77 patients aged 50 to 59 years, 148 patients aged 60 to 69 years, 240 patients aged 70 to 79 years, 97 patients aged 80 to 89 years, and 9 patients aged 90 to 99 years. Extrapyramidal reactions related to epidural administration may readily develop at younger ages.


Asunto(s)
Antieméticos/efectos adversos , Enfermedades de los Ganglios Basales/inducido químicamente , Droperidol/efectos adversos , Adolescente , Adulto , Factores de Edad , Anciano , Anciano de 80 o más Años , Antieméticos/administración & dosificación , Niño , Relación Dosis-Respuesta a Droga , Droperidol/administración & dosificación , Femenino , Humanos , Inyecciones Epidurales , Náusea y Vómito Posoperatorios/tratamiento farmacológico
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