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1.
Front Neuroinform ; 11: 15, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28303099

RESUMEN

Sleep spindles and K-complexes are among the most prominent micro-events observed in electroencephalographic (EEG) recordings during sleep. These EEG microstructures are thought to be hallmarks of sleep-related cognitive processes. Although tedious and time-consuming, their identification and quantification is important for sleep studies in both healthy subjects and patients with sleep disorders. Therefore, procedures for automatic detection of spindles and K-complexes could provide valuable assistance to researchers and clinicians in the field. Recently, we proposed a framework for joint spindle and K-complex detection (Lajnef et al., 2015a) based on a Tunable Q-factor Wavelet Transform (TQWT; Selesnick, 2011a) and morphological component analysis (MCA). Using a wide range of performance metrics, the present article provides critical validation and benchmarking of the proposed approach by applying it to open-access EEG data from the Montreal Archive of Sleep Studies (MASS; O'Reilly et al., 2014). Importantly, the obtained scores were compared to alternative methods that were previously tested on the same database. With respect to spindle detection, our method achieved higher performance than most of the alternative methods. This was corroborated with statistic tests that took into account both sensitivity and precision (i.e., Matthew's coefficient of correlation (MCC), F1, Cohen κ). Our proposed method has been made available to the community via an open-source tool named Spinky (for spindle and K-complex detection). Thanks to a GUI implementation and access to Matlab and Python resources, Spinky is expected to contribute to an open-science approach that will enhance replicability and reliable comparisons of classifier performances for the detection of sleep EEG microstructure in both healthy and patient populations.

2.
Front Hum Neurosci ; 9: 414, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-26283943

RESUMEN

A novel framework for joint detection of sleep spindles and K-complex events, two hallmarks of sleep stage S2, is proposed. Sleep electroencephalography (EEG) signals are split into oscillatory (spindles) and transient (K-complex) components. This decomposition is conveniently achieved by applying morphological component analysis (MCA) to a sparse representation of EEG segments obtained by the recently introduced discrete tunable Q-factor wavelet transform (TQWT). Tuning the Q-factor provides a convenient and elegant tool to naturally decompose the signal into an oscillatory and a transient component. The actual detection step relies on thresholding (i) the transient component to reveal K-complexes and (ii) the time-frequency representation of the oscillatory component to identify sleep spindles. Optimal thresholds are derived from ROC-like curves (sensitivity vs. FDR) on training sets and the performance of the method is assessed on test data sets. We assessed the performance of our method using full-night sleep EEG data we collected from 14 participants. In comparison to visual scoring (Expert 1), the proposed method detected spindles with a sensitivity of 83.18% and false discovery rate (FDR) of 39%, while K-complexes were detected with a sensitivity of 81.57% and an FDR of 29.54%. Similar performances were obtained when using a second expert as benchmark. In addition, when the TQWT and MCA steps were excluded from the pipeline the detection sensitivities dropped down to 70% for spindles and to 76.97% for K-complexes, while the FDR rose up to 43.62 and 49.09%, respectively. Finally, we also evaluated the performance of the proposed method on a set of publicly available sleep EEG recordings. Overall, the results we obtained suggest that the TQWT-MCA method may be a valuable alternative to existing spindle and K-complex detection methods. Paths for improvements and further validations with large-scale standard open-access benchmarking data sets are discussed.

3.
Open Biomed Eng J ; 9: 151-6, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-26312076

RESUMEN

Spikes and sharp waves recorded on scalp EEG may play an important role in identifying the epileptogenic network as well as in understanding the central nervous system. Therefore, several automatic and semi-automatic methods have been implemented to detect these two neural transients. A consistent gold standard associated with a high degree of agreement among neuroscientists is required to measure relevant performance of different methods. In fact, scalp EEG data can often be corrupted by a set of artifacts and are not always served as data of gold standard. For this reason, the use of intracerebral EEG data mixed with gaussian noise seems to best resemble the output of scalp EEG brain and serves as a consistent gold standard. In the present framework, we test the robustness of two important methods that have been previously used for the automatic detection of epileptiform transients (spikes and sharp waves). These methods are based respectively on Discrete Wavelet Transform (DWT) and Continuous Wavelet Transform (CWT). Our purpose is to elaborate a comparative study in terms of sensitivity and selectivity changes via the decrease of Signal to Noise Ratio (SNR), which is ranged from 10 dB up to -10 dB. The results demonstrate that, DWT approach turns to be more stable in terms of sensitivity, and it successfully follows the detection of relevant spikes with the decrease of SNR. However, CWT-based approach remains more stable in terms of selectivity, so that, it performs well in terms of rejecting false spikes compared to DWT approach.

4.
J Neurosci Methods ; 250: 94-105, 2015 Jul 30.
Artículo en Inglés | MEDLINE | ID: mdl-25629798

RESUMEN

BACKGROUND: Sleep staging is a critical step in a range of electrophysiological signal processing pipelines used in clinical routine as well as in sleep research. Although the results currently achievable with automatic sleep staging methods are promising, there is need for improvement, especially given the time-consuming and tedious nature of visual sleep scoring. NEW METHOD: Here we propose a sleep staging framework that consists of a multi-class support vector machine (SVM) classification based on a decision tree approach. The performance of the method was evaluated using polysomnographic data from 15 subjects (electroencephalogram (EEG), electrooculogram (EOG) and electromyogram (EMG) recordings). The decision tree, or dendrogram, was obtained using a hierarchical clustering technique and a wide range of time and frequency-domain features were extracted. Feature selection was carried out using forward sequential selection and classification was evaluated using k-fold cross-validation. RESULTS: The dendrogram-based SVM (DSVM) achieved mean specificity, sensitivity and overall accuracy of 0.92, 0.74 and 0.88 respectively, compared to expert visual scoring. Restricting DSVM classification to data where both experts' scoring was consistent (76.73% of the data) led to a mean specificity, sensitivity and overall accuracy of 0.94, 0.82 and 0.92 respectively. COMPARISON WITH EXISTING METHODS: The DSVM framework outperforms classification with more standard multi-class "one-against-all" SVM and linear-discriminant analysis. CONCLUSION: The promising results of the proposed methodology suggest that it may be a valuable alternative to existing automatic methods and that it could accelerate visual scoring by providing a robust starting hypnogram that can be further fine-tuned by expert inspection.


Asunto(s)
Encéfalo/fisiología , Árboles de Decisión , Electroencefalografía/métodos , Polisomnografía/métodos , Fases del Sueño/fisiología , Máquina de Vectores de Soporte , Adulto , Análisis por Conglomerados , Análisis Discriminante , Electromiografía/métodos , Electrooculografía/métodos , Humanos , Modelos Lineales , Sensibilidad y Especificidad
5.
J Neurosci Methods ; 232: 36-46, 2014 Jul 30.
Artículo en Inglés | MEDLINE | ID: mdl-24814526

RESUMEN

Recent studies have reported that discrete high frequency oscillations (HFOs) in the range of 80-500Hz may serve as promising biomarkers of the seizure focus in humans. Visual scoring of HFOs is tiring, time consuming, highly subjective and requires a great deal of mental concentration. Due to the recent explosion of HFOs research, development of a robust automated detector is expected to play a vital role in studying HFOs and their relationship to epileptogenesis. Therefore, a handful of automated detectors have been introduced in the literature over the past few years. In fact, all the proposed methods have been associated with high false-positive rates, which essentially arising from filtered sharp transients like spikes, sharp waves and artifacts. In order to specifically minimize false positive rates and improve the specificity of HFOs detection, we proposed a new approach, which is a combination of tunable Q-factor wavelet transform (TQWT), morphological component analysis (MCA) and complex Morlet wavelet (CMW). The main findings of this study can be summarized as follows: The proposed method results in a sensitivity of 96.77%, a specificity of 85.00% and a false discovery rate (FDR) of 07.41%. Compared to this, the classical CMW method applied directly on the signals without pre-processing by TQWT-MCA achieves a sensitivity of 98.71%, a specificity of 18.75%, and an FDR of 29.95%. The proposed method may be considered highly accurate to distinguish between transients with and without HFOs. Consequently, it is remarkably reliable and robust for the detection of HFOs.


Asunto(s)
Ondas Encefálicas/fisiología , Encéfalo/fisiología , Algoritmos , Animales , Electroencefalografía , Humanos , Sensibilidad y Especificidad , Procesamiento de Señales Asistido por Computador
6.
Artículo en Inglés | MEDLINE | ID: mdl-18002353

RESUMEN

Current speech processing strategies for cochlear prosthesis system use filter bank structure in order to extract speech signal's energies relatively to the multiple frequency bands which are associated to the dedicated stimulation electrodes. This research concerned wavelet filtering module based on Mellin transform and dedicated to one cochlear speech processing strategy. Our bank filtering module was composed of twenty one filters designed according to Morlet mother wavelet and distributed along the Munich critical bands. Hence, our considered auditory spectrum would be divided into twenty one critical frequency bands according to ERB model (Equivalent Rectangular Bandwidth) which would be similar to auditory model. Continuous wavelet transform based Filters' outputs would processed in order to provide the relatively energy levels which would be considered as the targeted stimulation levels. Mellin transform used in this processing permitted a fast algorithm execution compared to one standard CWT based filtering module. Algorithm validation was approved using different input signals as pure harmonics first and then real speech signals extracted from TIMIT database. Our proposed strategy ensures not only execution rapidity but also flexibility in programming, easiness in use as well as different safety features that could help reaching each individual's needs.


Asunto(s)
Cóclea/anatomía & histología , Implantes Cocleares , Sordera/rehabilitación , Procesamiento de Señales Asistido por Computador , Percepción del Habla , Algoritmos , Interpretación Estadística de Datos , Electrodos , Diseño de Equipo , Análisis de Fourier , Audición , Humanos , Modelos Estadísticos , Programas Informáticos , Factores de Tiempo
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