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1.
Environ Sci Pollut Res Int ; 30(3): 6805-6817, 2023 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-36002791

RESUMEN

Ascidians or sea squirts are among the marine taxa with the most introduced species worldwide. These animals have a suite of biological characteristics that contribute to their successful establishment, including long reproductive seasons, rapid growth rates, and resistance to pollution. Here, we sequenced a fragment of the 16S ribosomal RNA gene to characterize symbiont diversity and host-specificity in the solitary species Syela clava and Ascidiella aspersa, and the colonial species Didemnum vexillum. Samples were collected from introduced populations in several marinas and mussel facilities around Ireland, and a marina in New Zealand. Two additional colonial species Botrylloides violaceus and Didemnum sp. were collected in Ireland, and ambient seawater was sampled from both countries for comparison. Data revealed a strong effect of host species and location on prokaryote symbiont composition, consistent with recent ascidian microbiome literature. However, a location effect did not manifest in alpha diversity metrics (e.g., the same ascidian species at different locations exhibited similar diversity) but was evident in beta diversity metrics (greater intra-specific differences across locations than within locations). Location effects were stronger than species effects only for the solitary species (i.e., A. aspersa from New Zealand was more similar to S. clava from New Zealand than to A. aspersa from Ireland). D. vexillum and A. aspersa hosted a high abundance of prokaryotic symbionts that were previously found in other ascidian species, while S. clava symbiotic community was more closely related to bacteria common in the marine environment. Further studies should aim to unravel host-microbe coevolutionary patterns and the microbial role in facilitating host establishment in different habitats.


Asunto(s)
Microbiota , Urocordados , Animales , Urocordados/microbiología , Irlanda , Nueva Zelanda , Bacterias/genética , Especies Introducidas , ARN Ribosómico 16S/genética , Filogenia
2.
Mater Today Proc ; 45: 2293-2305, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33134090

RESUMEN

Covid-19 is a dangerous communicable virus which lets down the world economy. Severe respiratory syndrome SARS-COV-2 leads to Corona Virus Disease (COVID-19) and has the capability of transmission through human-to-human and surface-to-human transmission leads the world to catastrophic phase. Computational system based biological signal analysis helps medical officers in handling COVID-19 tasks like ECG monitoring at Intensive care, fatal ventricular fibrillation, etc., This paper is on diagnosing heart dysfunctions such as tachycardia, bradycardia, ventricular fibrillation, cardiac arrhythmia using fuzzy relations and artificial intelligence algorithm. In this study, the heart pulse base signal and features like spectral entropy, largest lyapunov exponent, Poincare plot and detrended fluctuation analysis are extracted and presented for classification purpose. The RR intervals of Poincare plot summarize RR time series obtained from an ECG in one picture, and a time interval quantities derives information duration of HRV. This analysis eases the prediction of heart rate fluctuation due to Covid or other heart disorders. The better accuracy level in diagnosing heart pulse irregularity using Artificial Neural network(ANN) is an integer value (0 to 4)but for Fuzzy Classifier, it is 0.8 to 0.9.The processing time for analyzing heart dysfunctionalties is 0.05 s using ANN which is far better than Fuzzy classifier.

3.
Front Microbiol ; 11: 554832, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-33519723

RESUMEN

Global warming is expected to reduce the nutrient concentration in the upper ocean and affect the physiology of marine diatoms, but the underlying molecular mechanisms controlling these physiological changes are currently unknown. To understand these mechanisms, here we investigated iTRAQ based proteomic profiling of diatom Skeletonema dohrnii in a multifactorial experimental with a combining change of temperature and silicate concentrations. In total, 3369 differently abundant proteins were detected in four different environmental conditions, and the function of all proteins was identified using Gene Ontology and KEGG pathway analysis. For discriminating the proteome variation among samples, multivariate statistical analysis (PCA, PLS-DA) was performed by comparing the protein ratio differences. Further, performing pathway analysis on diatom proteomes, we here demonstrated downregulation of photosynthesis, carbon metabolism, and ribosome biogenesis in the cellular process that leads to decrease the oxidoreductase activity and affects the cell cycle of the diatom. Using PLS-DA VIP score plot analysis, we identified 15 protein biomarkers for discriminating studied samples. Of these, five proteins or gene (rbcL, PRK, atpB, DNA-binding, and signal transduction) identified as key biomarkers, induced by temperature and silicate stress in diatom metabolism. Our results show that proteomic finger-printing of S. dohrnii with different environmental conditions adds biological information that strengthens marine phytoplankton proteome analysis.

4.
3 Biotech ; 9(5): 172, 2019 May.
Artículo en Inglés | MEDLINE | ID: mdl-30997309

RESUMEN

In this present study, we conducted untargeted metabolic profiling using gas chromatography-mass spectrometry (GC-MS) analysis of ascidian Didemnum bistratum to assess the chemical constituents by searching in NIST library with promising biological properties against anti-bacterial and Zika virus vector mosquitocidal properties. Metabolites, steroids and fatty acids are abundant in crude compounds of ascidian D. bistratum and showed potential zone growth inhibition against bacterial strains Kluyvera ascorbate (10 mm). The active crude compounds of D. bistratum exhibited prominent larvicidal activity against the Zika vector mosquitoes of Aedes aegypti (LC50 values of 0.44 mg/ml) and Cluex quinquefasciatus (LC50 values of 2.23 mg/ml). The findings of this study provide a first evidence of the biological properties exhibited by D. bistratum extracts, thus increasing the knowledge about the Zika virus vector mosquitocidal properties of ascidian. Overall, ascidian D. bistratum is promising and biocontrol or eco-friendly tool against A. aegypti and C. quinquefasciatus with prospective toxicity against non-target organisms.

5.
Nat Prod Res ; 33(14): 2120-2124, 2019 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-30253657

RESUMEN

The chemical diversity of three macroalgae (Ulva reticulata, Sargassum wightii, Gracilaria sp) were determined using the GC-MS method with principal component analysis (PCA) and their potential efficacy against human pathogens and cervical carcinoma cells evaluated using MTT bioassay method. Our results showed that >30 metabolites were detected in three seaweeds, among these, steroids and fatty acids are the most dominant chemical group that highly contributes to discriminate this species. The PCA of GC-MS mass spectral variables showed a clear discrimination between three different species based on the phytochemical diversity of seaweeds. The extracts of U. reticulata exhibited anti-microbial activity with Pseudomonas aeruginosa (6.00 mm) and showed potential anti-proliferative activity against the HeLa cells (IC50 37 µmol/L) at concentration 1-50 µM treatment. Results of this study concluded that PCA analysis of mass spectral variables could be utilized as a reliable tool for species discrimination and chemotaxonomic classification of seaweeds.


Asunto(s)
Antineoplásicos/farmacología , Gracilaria/química , Sargassum/química , Ulva/química , Antibacterianos/química , Antibacterianos/farmacología , Antineoplásicos/química , Ácidos Grasos/análisis , Ácidos Grasos/metabolismo , Cromatografía de Gases y Espectrometría de Masas/métodos , Cromatografía de Gases y Espectrometría de Masas/estadística & datos numéricos , Gracilaria/metabolismo , Células HeLa , Humanos , India , Extractos Vegetales/análisis , Extractos Vegetales/química , Análisis de Componente Principal , Pseudomonas aeruginosa , Sargassum/metabolismo , Algas Marinas/química , Algas Marinas/metabolismo , Esteroides/análisis , Esteroides/química , Ulva/metabolismo
6.
3 Biotech ; 8(5): 251, 2018 May.
Artículo en Inglés | MEDLINE | ID: mdl-29755920

RESUMEN

The complex nature of marine biodiversity is partially responsible for the lack of studies in Indian ascidian species, which often target a small number of novel biomolecules. We performed untargeted metabolomics using gas chromatography-mass spectrometry (GC-MS) in two invasive ascidian species to investigate the inter-specific chemical diversity of Phallusia nigra and P. arabica in search of drug-like properties and metabolic pathways. The chemical profiling of individual ascidian species was obtained using GC-MS, and the metabolites were determined by searching in NIST library and literature data. The principal component analysis of GC-MS mass spectral variables showed a clear discrimination of these two ascidian species based on the chemical composition and taxonomy. The metabolites, lipids, macrolides, and steroids contributed strongly to the discrimination of these two species. Results of this study confirmed that GC-MS-based chemical profiling could be utilized as a tool for chemotaxonomic classification of ascidian species. The extract of P. nigra showed promising anti-tumor activity against HT29 colon cancer 35 µM and MCF7-breast cancer (34.76 µM) cells compared to P. arabica. Of the more than 70 metabolites measured, 18 metabolites that mapped various pathways linked to three metabolic pathways being impacted and altered in steroid biosynthesis, primary bile acid biosynthesis, and steroid hormone biosynthesis were observed to have changed significantly (p > 0.004, FDR < 0.01). Also, higher expression of this pathway was associated with more significant cytotoxicity in breast and colon carcinoma cells.

7.
Bioengineered ; 9(1): 55-60, 2018 01 01.
Artículo en Inglés | MEDLINE | ID: mdl-29072513

RESUMEN

In October 2016, a rapid assessment survey of ascidian species was conducted in shellfish farms at Killary Fjord, in the west of Ireland. Two non-indigenous solitary ascidians Ascidiella aspersa and Corella eumoyta were recorded for the first time in shellfish farms at this location. Both invasive ascidians have the potential to greatly reduce mussel production in Killary Fjord by competing with shellfish for food and habitat. Their high abundance also causes an increase in maintenance costs leading to economic losses for aquaculture farmers. Prompted by our finding of two invasive ascidians in Killary Fjord, we provide a brief review of the ecological role of ascidians and the potential of harnessing biomass from such invasive species for the production of high added value marine natural products.


Asunto(s)
Productos Biológicos/aislamiento & purificación , Especies Introducidas , Larva/fisiología , Mariscos/parasitología , Urocordados/fisiología , Animales , Acuicultura/economía , Acuicultura/métodos , Incrustaciones Biológicas , Productos Biológicos/metabolismo , Biomasa , Desinfectantes/farmacología , Ecosistema , Irlanda , Larva/efectos de los fármacos , Urocordados/efectos de los fármacos
8.
J Enzyme Inhib Med Chem ; 32(1): 614-623, 2017 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-28234548

RESUMEN

To identify the metabolite distribution in ascidian, we have applied an integrated liquid chromatography- tandem mass spectrometry (LC-MS) metabolomics approach to explore and identify patterns in chemical diversity of invasive ascidian Styela plicata. A total of 71 metabolites were reported among these alkaloids, fatty acids and lipids are the most dominant chemical group. Multivariate statistical analysis, principal component analysis (PCA) showed a clear separation according to chemical diversity and taxonomic groups. PCA and partial least square discriminant analysis were applied to discriminate the chemical group of S. plicata crude compounds and classify the compounds with unknown biological activities. In this study, we reported for the first time that a partially purified methanol extract prepared from the ascidian S. plicata and Ascidia mentula possess antitumor activity against four tumor cell lines with different tumor histotype, such as HeLa (cervical carcinoma), HT29 (colon carcinoma), MCF-7 (breast carcinoma) and M14 (melanoma). S. plicata fraction SP-50 showed strong inhibition of cell proliferation and induced apoptosis in HeLa and HT29 cells, thus indicating S. plicata fraction SP-50 a potential lead compound for anticancer therapy. The molecular mechanism of action and chemotherapeutic potential of these ascidian unknown biomolecules need further research.


Asunto(s)
Antineoplásicos/farmacología , Cromatografía Líquida de Alta Presión/métodos , Espectrometría de Masas/métodos , Urocordados/metabolismo , Animales , Apoptosis/efectos de los fármacos , Línea Celular Tumoral , Ensayos de Selección de Medicamentos Antitumorales , Humanos , Análisis Multivariante
9.
Nat Prod Bioprospect ; 7(1): 1-111, 2017 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-28097641

RESUMEN

This present study reviewed the chemical diversity of marine ascidians and their pharmacological applications, challenges and recent developments in marine drug discovery reported during 1994-2014, highlighting the structural activity of compounds produced by these specimens. Till date only 5% of living ascidian species were studied from <3000 species, this study represented from family didemnidae (32%), polyclinidae (22%), styelidae and polycitoridae (11-12%) exhibiting the highest number of promising MNPs. Close to 580 compound structures are here discussed in terms of their occurrence, structural type and reported biological activity. Anti-cancer drugs are the main area of interest in the screening of MNPs from ascidians (64%), followed by anti-malarial (6%) and remaining others. FDA approved ascidian compounds mechanism of action along with other compounds status of clinical trials (phase 1 to phase 3) are discussed here in. This review highlights recent developments in the area of natural products chemistry and biotechnological approaches are emphasized.

10.
Artículo en Inglés | WPRIM (Pacífico Occidental) | ID: wpr-820350

RESUMEN

The evolutionarily unique and ecologically diverse family Conidae presents fundamental opportunities for marine pharmacology research and drug discovery. The focus of this investigation is to summarize the worldwide distribution of Conus and their species diversity with special reference to the Indian coast. In addition, this study will contribute to understanding the structural properties of conotoxin and therapeutic application of Conus venom peptides. Cone snails can inject a mix of various conotoxins and these venoms are their major weapon for prey capture, and may also have other biological purposes, and some of these conotoxins fatal to humans. Conus venoms contain a remarkable diversity of pharmacologically active small peptides; their targets are an iron channel and receptors in the neuromuscular system. Interspecific divergence is pronounced in venom peptide genes, which is generally attributed to their species specific biotic interactions. There is a notable interspecific divergence observed in venom peptide genes, which can be justified as of biotic interactions that stipulate species peculiar habitat and ecology of cone snails. There are several conopeptides used in clinical trials and one peptide (Ziconotide) has received FDA approval for treatment of pain. This perspective provides a comprehensive overview of the distribution of cone shells and focus on the molecular approach in documenting their taxonomy and diversity with special reference to geographic distribution of Indian cone snails, structure and properties of conopeptide and their pharmacological targets and future directions.

11.
Artículo en Chino | WPRIM (Pacífico Occidental) | ID: wpr-951577

RESUMEN

The evolutionarily unique and ecologically diverse family Conidae presents fundamental opportunities for marine pharmacology research and drug discovery. The focus of this investigation is to summarize the worldwide distribution of Conus and their species diversity with special reference to the Indian coast. In addition, this study will contribute to understanding the structural properties of conotoxin and therapeutic application of Conus venom peptides. Cone snails can inject a mix of various conotoxins and these venoms are their major weapon for prey capture, and may also have other biological purposes, and some of these conotoxins fatal to humans. Conus venoms contain a remarkable diversity of pharmacologically active small peptides; their targets are an iron channel and receptors in the neuromuscular system. Interspecific divergence is pronounced in venom peptide genes, which is generally attributed to their species specific biotic interactions. There is a notable interspecific divergence observed in venom peptide genes, which can be justified as of biotic interactions that stipulate species peculiar habitat and ecology of cone snails. There are several conopeptides used in clinical trials and one peptide (Ziconotide) has received FDA approval for treatment of pain. This perspective provides a comprehensive overview of the distribution of cone shells and focus on the molecular approach in documenting their taxonomy and diversity with special reference to geographic distribution of Indian cone snails, structure and properties of conopeptide and their pharmacological targets and future directions.

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