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1.
PLoS One ; 18(10): e0292955, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37851600

RESUMEN

Coriander, fenugreek, nigella etc. are collectively known as seed spices. They are "High value and low volume crops" and considered cash crops for the growers of arid and semi-arid regions of India. Coriander, fenugreek and nigella are grown during the rabi season and take hardly 130-140 days to attain full maturity. In this context, farmers are not able to develop income from available arable land round the year, even though they have sufficient resources as well as manpower. Therefore, coriander, fenugreek and nigella-based cropping systems, four of each (total 12) were evaluated during 3 consecutive years (2019-20 to 2021-22) for their productivity, resource-use efficiency, economics and soil fertility. The results showed that among the seed spices-based cropping systems, maximum system productivity (5193 kg ha-1), production efficiency (18.81 kg ha-1 day-1), water-use efficiency (2.31 kg ha-1 mm-1), economic efficiency (11.85 US $ ha-1 day-1), net return (3270 US $ ha-1), benefit:cost ratio (3.27) and available N (165.6 kg ha-1) were observed under nigella-green coriander-mungbean cropping system. Hence, seed spices growers are recommended to adopt nigella-green coriander-mungbean cropping system in order to realize better productivity, resource-use efficiency, soil fertility and profitability.


Asunto(s)
Fabaceae , Suelo , Agricultura/métodos , Clima Desértico , India
2.
Mol Biol Rep ; 48(5): 3963-3970, 2021 May.
Artículo en Inglés | MEDLINE | ID: mdl-34021895

RESUMEN

Coriander (Coriandrum sativum L.) is well known vegetable and spice crop grown globally for its leaves and seeds. Stem gall (Protomyces macrosporus L.) is a fungal disease affecting its quality and yield. However, no information is available on SSR markers linked to disease resistance in coriander. Hence, development of co-dominant genetic markers is prerequisite for disease investigations in coriander. In-house stem gall resistance and susceptible cultivars transcriptome data were utilized. Totally, 59,933 and 56,861 transcripts were examined, 9141 and 8346 Simple Sequence Repeats (SSR) were identified and the most abundant type was the tri, followed by di, tetra, penta and hexa nucleotide repeats. A total of ten selected SSR-Functional Domain Markers (FDM) were developed based on functional annotation terms associated with pathogen response and validated among ten coriander cultivars and their transferability was examined in five fennel (Foeniculum vulgare L.) cultivars. Nine primer pairs resulted from amplified bands. Marker ACorSGD-1 shown monomorphic bands among coriander genotypes except Acr-1 showed heterologouse and multiple bands in fennel cultivars. Markers ACorSGD-4, 5, 7 and 9 shown presence in resistant cultivars and absence of bands among susceptible cultivars of coriander and thus, considered to be the candidate markers for disease screening. Marker ACorSGD-6 shown monomorphic bands among coriander. Markers ACorSGD-1, 2, 3, and 5 shown transferability among fennel cultivars. A total of 136 alleles in coriander and fennel were produced. Using UPGMA clustering method a dendrogram was generated and cultivars were grouped into two separate clusters with coriander and fennel. Identified and developed SSR-FDM markers are useful for linkage mapping for disease resistant in coriander.


Asunto(s)
Coriandrum/genética , Coriandrum/metabolismo , Repeticiones de Microsatélite/genética , Ascomicetos/patogenicidad , Mapeo Cromosómico/métodos , Resistencia a la Enfermedad/genética , Expresión Génica/genética , Perfilación de la Expresión Génica/métodos , Regulación de la Expresión Génica de las Plantas/genética , Marcadores Genéticos/genética , Genotipo , Micosis/genética , Filogenia , Hojas de la Planta/genética , Polimorfismo Genético/genética , Transcriptoma/genética
3.
Mol Biol Rep ; 47(7): 5403-5409, 2020 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-32617958

RESUMEN

Coriander (Coriandrum sativum L.) is a well-known spice and aromatic crop cultivated globally. Stem gall disease is one of the major constraints for its leaf and seed quality used for consumption and also affecting the yield. The identification of resistance genes and further characterization of such genes could help to understand the molecular basis of resistance and lay a solid ground for cloning of stem gall resistance genes in coriander. To evaluate the genetic expression of disease resistance-relevant genes in popularly grown coriander cultivars in India such as Pant Haritma, Hisar Sugandh, Hisar Surabhi, Hisar Anand, Rajendra Swathi, ACr-1, ACr-2, AgCr-1, CO-2 and CS-6 were used for LRR, GDSL, USP, ANK and PDR gene expression using Real Time PCR along with 18S housekeeping gene as internal control for the normalization. Result revealed the different expression pattern of genes among the cultivars tested. Highest expression was shown in cultivar AgCr-1 followed by Pant Haritma, Hisar Sugandh and ACr-1, and least expression in Hisar Anand, ACr-2, CO-2, Rajendra Swathi and CS-6. Domain analysis revealed the conserved domain relevance of the genes. This is the first report on stem gall resistance gene expression in coriander. The identified genes have a potential role in coriander and further utilize in crop improvement program. We hypothesize that contrasting cultivars can be a good source for candidate gene evaluation and further to use them as potential markers and used in hybridization program focus on incorporating and develop durable disease-resistance into the adapted cultivars of the region.


Asunto(s)
Coriandrum/genética , Resistencia a la Enfermedad/genética , Enfermedades de las Plantas/genética , Expresión Génica/genética , Regulación de la Expresión Génica de las Plantas/genética , India , Hojas de la Planta/genética , Hojas de la Planta/metabolismo , Tallos de la Planta/genética , Tallos de la Planta/metabolismo , Transcriptoma/genética
4.
J Genet ; 982019 03.
Artículo en Inglés | MEDLINE | ID: mdl-30945672

RESUMEN

Stem gall (Protomyces macrosporus Unger), a serious disease that affects leaves, petioles, stems and fruits of coriander (Coriandrum sativum L.) causing heavy loss in yield. Genetic improvement of coriander for stem gall disease is indispensable. Coriander cultivars of stem gall resistance (ACr-1) and susceptible (CS-6) leaf samples were utilized and transcriptome sequenced using Illumina NextSeq500 platform. After trimming low-quality reads and adapter sequences, a total of 49,163,108 and 43,746,120 high-quality reads were retained and further assembly resulted validated transcripts of 59,933 and 56,861. We have predicted 52,506 and 48,858 coding sequences (CDS) ofwhich 50,506 and 46,945 were annotated using NCBInr database. Gene ontology analysis annotated 19,099 and 17,625 terms; pathway analysis obtained 24 different functional pathway categories; signal transduction, transport, catabolism, translation and carbohydrate metabolism pathways etc. were dominated. Differentially expressed genes analysis predicted 13,123 CDS commonly expressed of which 431 and 400 genes were significantly upregulated and downregulated, respectively, in which Rgenes, stress inducible transcription factors such as ERF, NAC, bZIP, MYB, DREB and WRKY and antifungal related genes were predicted. The real-time PCR analysis of HSP20 gene expression in resistance showed upregulation by 10-fold over susceptible sample and 18s used as a housekeeping gene for normalization. The present results provide an insights into various aspects underlying the development of resistance to stem gall in coriander.


Asunto(s)
Coriandrum/genética , Resistencia a la Enfermedad/genética , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Enfermedades de las Plantas/genética , Hojas de la Planta/genética , Proteínas de Plantas/genética , Coriandrum/microbiología , Ontología de Genes , Interacciones Huésped-Patógeno , Anotación de Secuencia Molecular , Enfermedades de las Plantas/microbiología , Hojas de la Planta/microbiología , Transcriptoma
5.
Acta Inform Med ; 20(4): 218-20, 2012 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-23378686

RESUMEN

BACKGROUND: Adverse cardiovascular effect of hypothyroidism has been identified in many studies. Early identification of patients with sub-clinical hypothyroidism may lead to early treatment and thereby favourable effect on cardiovascular morbidity and mortality. OBJECTIVES: To find out the association of sub clinical hypothyroidism and left ventricular dysfunction and also to find out relationship between systolic and diastolic dysfunction in these patients. MATERIAL AND METHODS: A total 30 cases of sub clinical hypothyroidism along with 15 age sex matched healthy control subjects were included in study. Serum TSH, T4, T3 hormone level was measured and those who were found to have sub-clinical hypothyroidism underwent for 2DEcho. RESULTS: Significant reduction in peak early filling velocity (PE) (p<0.001) and early filling time velocity integral (Ei) (p<0.001). Ratio of early and late peak velocities (PE/PA) (p<0.001), ratio of time velocity integral of early and atrial filling (Ei/Ai) (p<0.001) and ratio of the early peak to average velocity (PE/M) (p<0.001) were also reduced. Mean EF was 54.9± 5.55 as compared to 55.7 ± 3.46 of control subjects with a T.value of 0.48 ,however there was significant diastolic dysfunction in case of hypothyroid patients (mean Ei/Ai = 1.35 ± 0.53) as compared to control group subjects (mean Ei/AI = 2.11 ± 0.26) with a T value of 5.22. CONCLUSION: Sub-clinical hypothyroidism showed significant diastolic dysfunction in the absence of significant impairment of systolic function.

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