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1.
Phytopathology ; 97(9): 1130-40, 2007 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-18944178

RESUMEN

ABSTRACT Colletotrichum gloeosporioides causes a serious crown rot of strawberry and some isolates from native plants are pathogenic to strawberry. C. gloeosporioides from lesions on wild grape and oak were sampled at two sites adjacent to commercial strawberry fields in Florida and two distant sites. Random amplified polymorphic DNA (RAPD) marker data and restriction enzyme digests of amplified rDNA were used to determine whether isolates were from the same C. gloeosporioides subgroup that infects strawberry. There were 17 to 24 native host isolates from each site that clustered with a group of strawberry crown isolates based on RAPD markers. Among strawberry isolates, there were two rDNA genotypes identified by restriction enzyme analysis. Both genotypes were present among native host isolates sampled from all four sites. There was some evidence that the different rDNA genotypes differentiated two closely related subpopulations, although the proportion of pathogenic isolates from native hosts among the two different genotypes was not different. The incidence of isolates pathogenic to strawberry was greater at sites close to strawberry fields relative to sites distant from strawberry fields for isolates with a BstUI(-)/MspI(+) rDNA genotype (44 versus 13%), a BstUI(+)/MspI(-) genotype (57 versus 16%), or when both genotypes were analyzed together (46 versus 15%). Based on these results, it appears that the C. gloeosporioides subgroup that causes crown rot on strawberry is widely distributed in Florida and that selection for pathogenicity on strawberry occurs in the area where this host is grown in abundance.

2.
Plant Dis ; 90(8): 1091-1097, 2006 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-30781305

RESUMEN

Isolates of Colletotrichum gloeosporioides from strawberry (Fragaria × ananassa) and native grape were tested for virulence on strawberry cultivars in field experiments for three seasons. Isolate aggressiveness and cultivar resistance were determined by the proportion of plants killed at a defined time. Each year, four to six isolates were inoculated on four to seven different cultivars, with a subset of isolates and cultivars evaluated again the next season. On the dates that disease was evaluated, incidence ranged from 10 to 84% for individual cultivars. Cultivar and isolate effects were significant in all three seasons, but there was no significant cultivar by isolate interaction in any season. Thus, resistance to C. gloeosporioides appears to be nonspecific. In the third season, one isolate of Colletotrichum fragariae from strawberry and one from oak were included. There was no significant cultivar by isolate interaction detected for this species, although there were significant differences among cultivars and isolates. When the resistance of cultivars to both species was compared, the rankings of cultivars were similar, but a modest cultivar by species interaction was evident. The cultivar Treasure was more resistant to crown rot caused by either species than any other cultivar tested.

3.
Plant Dis ; 89(12): 1353-1358, 2005 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-30791316

RESUMEN

Crop phenology and epidemiological information were used to design a reduced use fungicide program for control of Botrytis fruit rot in winter annual strawberry. Fungicide spray programs during early and late periods of the season using high and low rates of captan were evaluated with or without second peak bloom applications of fenhexamid during the 1999-2000 and 2000-2001 seasons. During the early harvest period, low rates of captan were as effective as high rates for controlling Botrytis fruit rot and maintaining yield. Late in the season, treatments with fenhexamid over the peak bloom period significantly improved control of Botrytis fruit rot and increased marketable yield. Application of both captan and fenhexamid during the second peak bloom did not reduce Botrytis fruit rot incidence or improve yield compared with fenhexamid alone during this time period. Late season applications of captan may be reduced or eliminated when bloom applications of fenhexamid are being applied without affecting Botrytis fruit rot control. The study generated new recommendations for use of low-rate applications of captan during the early season and applications of fenhexamid during the second peak bloom period for winter annual strawberry production in Florida.

4.
Plant Dis ; 88(4): 407-412, 2004 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-30812623

RESUMEN

The herbicide paraquat is used to kill plant tissues and accelerate the growth of quiescent fungal colonists. In this study, freezing was investigated as an alternative to paraquat for the detection of latent infections of Colletotrichum spp. on strawberry petioles. Apparently healthy petioles from field-grown plants and inoculated petioles from greenhouse-grown plants were killed by freezing or exposure to 0.3% paraquat, and incubated in petri dish moist chambers. Previously frozen petioles were treated with 0.525 or 0.0525% sodium hypochlorite and Tween 20 at 18 µl/liter for selected intervals to test the effects of surface disinfestation on detection frequency. After 5 to 7 days of incubation, Colletotrichum acervuli developed much more frequently on freeze- and paraquat-treated petioles than on washed petioles which were not killed. Detection frequencies were similar for paraquat and some freeze treatments, but the latter were negatively affected by prolonged surface disinfestation. Using the petiole freeze method, Colletotrichum acutatum, C. gloeosporioides, and Glomerella cingulata (the teleomorph of C. gloeosporioides) were detected on symptomless petioles of field-grown plants. In addition, C. acutatum and C. dermatium were detected on apparently healthy transplants from northern nurseries. All of these fungi are reported pathogens of strawberry, but not all C. gloeosporioides isolates from frozen petioles were pathogenic in greenhouse bioassays. Freezing is a viable, nonhazardous alternative to paraquat for the detection of latent Colletotrichum infections on strawberry.

5.
Phytopathology ; 94(5): 446-53, 2004 May.
Artículo en Inglés | MEDLINE | ID: mdl-18943762

RESUMEN

ABSTRACT Colletotrichum crown rot of strawberry in Florida is caused primarily by Colletotrichum gloeosporioides. To determine potential inoculum sources, isolates of Colletotrichum spp. from strawberry and various noncultivated plants growing in the areas adjacent to strawberry fields were collected from different sites. Species-specific internal transcribed spacer primers for C. gloeosporioides and C. acutatum were used to identify isolates to species. Random amplified polymorphic DNA (RAPD) markers were used to determine genetic relationships among isolates recovered from noncultivated hosts and diseased strawberry plants. Selected isolates also were tested for pathogenicity on strawberry plants in the greenhouse. In all, 39 C. gloeosporioides and 3 C. acutatum isolates were recovered from diseased strawberry crowns, and 52 C. gloeosporioides and 1 C. acutatum isolate were recovered from noncultivated hosts. In crown inoculation tests, 18 of the 52 C. gloeosporioides isolates recovered from noncultivated hosts were pathogenic to strawberry. Phylogenetic analysis using RAPD marker data divided isolates of C. gloeosporioides from noncultivated hosts into two separate clusters. One cluster contained 50 of the 52 isolates and a second cluster contained 2 isolates that were homothallic in culture. Isolates from strawberry were interspersed within the cluster containing the 50 isolates that were recovered from noncultivated hosts. The results are not inconsistent with the hypothesis that C. gloeosporioides isolates obtained from strawberry and noncultivated hosts adjacent to strawberry fields are from the same population and that noncultivated hosts can serve as potential inoculum sources for Colletotrichum crown rot of strawberry.

6.
Plant Dis ; 87(8): 991-998, 2003 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-30812808

RESUMEN

A plant yield and disease incidence uniformity trial was conducted to provide information concerning the efficiency and precision of field trials used to evaluate Botrytis fruit rot control methods on strawberry. Fruit yield and Botrytis fruit rot incidence were recorded for individual strawberry plants of cultivars Sweet Charlie and Camarosa grown in an annual production system over two growing seasons. A nested analysis of variance model was used to measure plot edge effects and to obtain variance components to describe the relationship between plot size and plot variance. Mean seasonal yield for Sweet Charlie was 599 g/plant and for Camarosa 972 g/plant. Mean seasonal fruit rot incidence was 10.3% for Sweet Charlie and 3.0% for Camarosa. Plants growing on the edge of plots next to aisles had higher yields (637 versus 577 g/plant for Sweet Charlie and 1047 versus 923 g/plant for Camarosa), but there was no edge effect for disease incidence. Smith's equation was used to determine the relationship between plot size and plot variance within mulched beds. Smith's index was relatively high for yield (0.92 and 0.95) and Botrytis fruit rot incidence (0.91 and 0.69) for Sweet Charlie and Camarosa, respectively. This suggests a relatively uniform distribution of seasonal yield and disease incidence among plants within beds. Using plot variances estimated from Smith's equation, the power of hypothesis tests to discriminate hypothetical treatment effects of different magnitudes was examined for each cultivar. Power analysis suggests that treatment effects ranging from 11.3 to 21.3% of the mean seasonal yield observed for Sweet Charlie and 8.6 to 16.5% of the mean seasonal yield observed for Camarosa can be detected with a power of 0.80 using four replicates of each treatment group and plot sizes ranging from 32 to eight plants/plot. For Botrytis fruit rot incidence, a power of 0.80 is achieved with treatment differences ranging from 24.9 to 44.1% of mean seasonal Botrytis fruit rot incidence for Sweet Charlie and from 44.1 to 64.9% of the mean observed for Camarosa using plot sizes ranging from 32 to 8 plants/plot. Before planting, the crown diameter and leaf number of transplants were recorded. There was no consistent significant correlation between any of these growth traits and seasonal yields or Botrytis fruit rot incidence. However, there was a consistent positive correlation for both cultivars between yield and crown diameter and also yield and leaf number during the months of December and January in the early part of the season (0.1513 ≤ r ≤ 0.314 for crown diameter and 0.106 ≤ r ≤ 0.264 for leaf number).

7.
Plant Dis ; 86(9): 1019-1024, 2002 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-30818532

RESUMEN

During the 1999-2000 and 2000-2001 growing seasons, field experiments were conducted to identify the developmental stage(s) of strawberry flowers and fruit that requires fungicide applications to control Botrytis fruit rot. Fenhexamid, a protectant fungicide, was applied to individual newly opened flowers or fruit of cultivar Sweet Charlie at defined intervals after anthesis. In 1999-2000, a single application of fenhexamid at anthesis controlled Botrytis fruit rot as well as multiple weekly applications beginning at anthesis. During both seasons, disease control deteriorated as applications were delayed 7 and 14 days after anthesis. This trend was described by linear regression equations relating the time of application to Botrytis fruit rot incidence. Additional treatments tested the effects of emasculation and petal removal 3 to 7 days after anthesis. Emasculation significantly reduced disease incidence in 2000-2001. Petal removal produced modest but significant reductions in 1999-2000, but not in 2000-2001. These results demonstrate that strawberry flowers are more susceptible to Botrytis cinerea than green fruit, and suggest that stamens are the principal infection court. Fungicide applications should focus on peak bloom periods to minimize fungicide use and optimize control of preharvest Botrytis fruit rot. During these periods, applications should be made at close intervals (≤7 days) to minimize losses to Botrytis.

8.
Phytopathology ; 92(11): 1245-52, 2002 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-18944251

RESUMEN

ABSTRACT Isolates of Colletotrichum spp. from diseased strawberry fruit and crowns were evaluated to determine their genetic diversity and the etiology of the diseases. Isolates were identified to species using polymerase chain reaction primers for a ribosomal internal transcribed spacer region and their pathogenicity was evaluated in bioassays. Isolates were scored for variation at 40 putative genetic loci with random amplified polymorphic DNA and microsatellite markers. Only C. acutatum was recovered from diseased fruit. Nearly all isolates from crowns were C. gloeosporioides. In crown bioassays, only isolates of C. gloeosporioides from strawberry caused collapse and death of plants. A dendrogram generated from the genetic analysis identified several primary lineages. One lineage included isolates of C. acutatum from fruit and was characterized by low diversity. Another lineage included isolates of C. gloeosporioides from crowns and was highly polymorphic. The isolates from strawberry formed distinctive clusters separate from citrus isolates. Evaluation of linkage disequilibrium among polymorphic loci in isolates of C. gloeosporioides from crowns revealed a low level of disequilibrium as would be expected in sexually recombining populations. These results suggest that epidemics of crown rot are caused by Glomerella cingulata (anamorph C. gloeosporioides) and that epidemics of fruit rot are caused by C. acutatum.

9.
Plant Dis ; 85(6): 597-602, 2001 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-30823024

RESUMEN

The control of postharvest Botrytis fruit rot was evaluated during 1997-98 and 1998-99. Weekly applications of captan and thiram were examined at two or three different rates, respectively. Iprodione applications were combined with the captan and thiram treatments and also applied alone for two peak bloom periods. Strawberry fruit were harvested and graded twice weekly for marketable yield and preharvest incidence of Botrytis fruit rot. For postharvest evaluations, fruit from four harvests were selected and stored at 4°C, and Botrytis fruit rot incidence was recorded over 14 days of storage. Fungicide treatments reduced the incidence of preharvest Botrytis fruit rot and increased marketable yield. The incidence of postharvest Botrytis fruit rot was significantly affected by harvest date, length of time in storage, and fungicide treatment. The highest rate captan and thiram treatments had the least Botrytis fruit rot and the longest storage life. Reduced-rate captan and thiram treatments generally did not provide the same control as their respective high-rate treatments. Iprodione added to either the captan or thiram treatments did not consistently reduce the preharvest or postharvest incidence of Botrytis fruit rot or increase yield. Regular, full-rate fungicide treatments appear to be necessary to control Botrytis fruit rot in Florida and to provide the storage life necessary to reach distant markets.

10.
Plant Dis ; 85(8): 901-909, 2001 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-30823060

RESUMEN

Epidemics of Botrytis fruit rot (Botrytis cinerea) and powdery mildew (Sphaerotheca macularis f. sp. fragariae) in annual strawberry were compared in large plastic tunnel and field production systems during the 1998-99 and 1999-2000 seasons. Treatments were factorial combinations of two main plots (field and tunnel) and four subplots, including combinations of two cultivars (Camarosa and Sweet Charlie) and two captan schedules arranged in a split-plot design with three replications. The mean incidence of Botrytis fruit rot was 88 to 94% lower in tunnels than in the field. The incidence of Botrytis fruit rot for the untreated control in tunnels was less than 2%, which was 89% lower than that of the 7-day captan schedule in the field. This indicates that Botrytis fruit rot can be controlled effectively without fungicides in a tunnel cultural system. Powdery mildew was severe on susceptible cultivar Camarosa in tunnels. Early season yields of cultivar Sweet Charlie were significantly higher in tunnels than in the field. Shorter periods of leaf wetness and higher temperatures in tunnels may have contributed to a lower incidence of Botrytis fruit rot and a higher incidence of powdery mildew on fruit in tunnels compared with open field plots.

11.
Plant Dis ; 85(7): 750-754, 2001 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-30823201

RESUMEN

The oversummer survival of Colletotrichum gloeosporioides in strawberry crown tissue under field conditions was investigated in 1998 and 1999. Strawberry crowns infected naturally with C. gloeosporioides were placed inside cloth bags containing field soil, buried in the field at 5 or 13 cm, then recovered over 6 months of each year. The recovered crowns were plated onto a Colletotrichum spp. semiselective medium and speciated by colony, spore morphology, and molecular markers with species-specific DNA primers. Pathogenicity of selected isolates was confirmed by greenhouse bioassays on strawberry. Of the 428 isolates of Colletotrichum spp. recovered from buried crowns, 96% were C. gloeosporioides and 4% Colletotrichum acutatum. Following an initial increase in the detection of the fungus, survival of C. gloeosporioides was stable for 2 to 3 weeks, then declined. No Colletotrichum spp. were detected after burial for 56 days in 1998 and 98 days in 1999. Because the time between crop seasons is typically more than 170 days, these data support the hypothesis that inoculum of C. gloeosporioides does not survive in buried plant debris between seasons in Florida and, therefore, oversummering crop debris does not contribute inoculum for epidemics of Colletotrichum crown rot in Florida.

12.
Plant Dis ; 85(1): 31-39, 2001 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-30832067

RESUMEN

The management of Botrytis fruit rot on annual strawberry by fungicides was evaluated in Florida during the 1995-96, 1996-97, and 1997-98 seasons. Weekly applications of captan or thiram, bloom applications of iprodione applied twice during each of two peak flowering periods, and weekly applications of captan combined with iprodione bloom applications were evaluated. Significant treatment effects (P ≤ 0.05) on the incidence of Botrytis fruit rot were detected for the early, late, and whole-season periods each season. Weekly applications of captan or thiram controlled Botrytis fruit rot, reducing disease incidence by more than 41% compared to the untreated control. These treatments also affected marketable yield during two seasons, with a 42 to 127% increase in yield compared to the control. Weekly fungicide applications did not reduce the incidence of Botrytis fruit rot until at least the fourth week of harvest, 9 to 10 weeks after applications began. Bloom applications of iprodione alone reduced the incidence of Botrytis fruit rot during the second peak bloom period, and the reductions in incidence occurred 1 to 3 weeks after the start of bloom applications. This suggests that iprodione applications control infections at flowering or early stages of fruit development. However, early-season bloom applications did not reduce the incidence of Botrytis fruit rot. The control of Botrytis fruit rot by weekly captan applications was not improved by the addition of iprodione bloom applications. These data suggest that early-season fungicide applications for the control of Botrytis fruit rot in annual winter strawberry are of limited efficacy, and that bloom applications of Botryticides such as iprodione should be focused on the second peak bloom period.

13.
Plant Dis ; 84(7): 743-748, 2000 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-30832102

RESUMEN

Evaluating fungicide efficacy in annual strawberry production systems can be labor intensive due to continuous harvesting over a relatively long season. The effect of reduced harvest number on the accuracy of least significant difference (LSD) separations for Botrytis fruit rot (Botrytis cinerea) incidence and marketable yield in fungicide efficacy studies was evaluated over three seasons. Fruit were harvested and graded twice a week for a total of 23 to 32 harvests each season. Data from each season were divided into different sample sets. Data from three different harvest periods (early, late, and whole season) and different harvesting frequencies (twice weekly, once weekly, every second, third, or fourth week) were compared with the complete data set (twice weekly for the whole season). Spearman's rank correlation and Pearson's product moment correlation coefficients were used to evaluate the correlation of the complete data sets with data sets from other sampling plans. Harvesting once a week for either the late- or whole-season periods accurately estimated LSD groupings for Botrytis fruit rot incidence among fungicide treatments. The precision of marketable yield estimates using once-a-week harvesting for the late or whole-season periods were relatively lower than for the incidence of Botrytis.

14.
Plant Dis ; 84(11): 1197-1202, 2000 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-30832167

RESUMEN

To determine the effects of sanitation on yield and incidence of Botrytis fruit rot (Botrytis cinerea) in annual strawberry, replicated experiments were conducted during the 1995-96, 1996-97, and 1998-99 seasons. Leaf sanitation (removal of senescent and necrotic leaves) and fruit sanitation (removal of unmarketable fruit from alleys between beds) were compared to a standard fungicide control program (weekly applications of captan plus four bloom applications of iprodione) and combined sanitation and fungicide treatments. Leaf sanitation reduced Botrytis fruit rot incidence from 12.6 to 8.2% over the entire 1996-97 season, and from 17.6 to 11.8% during the latter half of the 1998-99 season, compared to untreated controls. However, sanitation did not increase marketable yield. Supplementing fungicides with leaf sanitation or leaf and fruit sanitation did not improve disease control and frequently reduced yield. Fruit sanitation had no significant effect on Botrytis incidence or yield. Losses to Botrytis fruit rot in the sanitation treatments were significantly higher (P ≤ 0.05) than in the fungicide treatments each season; marketable yields were significantly lower in 1996-97 and 1998-99. Under Florida conditions, fungicides control Botrytis fruit more effectively and economically than does sanitation.

15.
Plant Dis ; 84(5): 531-538, 2000 May.
Artículo en Inglés | MEDLINE | ID: mdl-30841344

RESUMEN

The effects of within-row plant spacing and cultivar on the incidence of Botrytis fruit rot (Botrytis cinerea) and marketable yield of annual strawberry were evaluated during the 1997-98 and 1998-99 seasons. Three cultivars (Camarosa, Rosa Linda, and Sweet Charlie) and four plant spacings (23, 30, 38, and 46 cm) were evaluated. Marketable yield and the incidence of Botrytis fruit rot were determined twice weekly. Cultivar and spacing effects were analyzed for three periods each season (early, late, and whole season). In 1997-98, spacing effects were observed on weekly incidence of Botrytis rot for the late period (P = 0.0925) and on cumulative incidence for the whole season period (P = 0.0795). Further analysis of the late and whole season periods revealed a spacing effect for Camarosa (P = 0.0102). Spacing also had a dramatic effect on cumulative and weekly Botrytis incidence for the late and whole season periods during the 1998-99 season (P ≤ 0.0014), when narrower spacings had higher incidence of Botrytis than wider spacings. Marketable yields were higher at narrower spacings during the early period for both seasons. Whole season marketable yields were also higher at the narrower spacings despite higher incidence of Botrytis. There were significant differences in susceptibility among cultivars.

16.
Plant Dis ; 81(2): 230, 1997 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-30870915

RESUMEN

Strawberry (Fragaria × ananassa Duchesne) plants with symptoms suggestive of phytoplasmal disease were identified in commercial fields and a breeder's plot in west central Florida during the 1995 to 1996 winter growing season. Affected plants were all conspicuously stunted and unproductive. Primary symptoms on cvs. Rosa Linda and Carlsbad and on a breeder's accession resembled those of strawberry green petal (SGP). Plants displayed sparse clusters of virescent flowers with enlarged sepals and phylloid receptacles that failed to develop fully into fleshy structures or redden on ripening. Symptoms on cv. Oso Grande were more typical of multiplier disease and included a proliferation of branch crowns producing numerous small leaves with spindly petioles. Oso Grande and Carlsbad originated as transplants from a nursery in Montreal, Canada, whereas Rosa Linda transplants were from Nova Scotia. Plants were assessed for phytoplasma infection by polymerase chain reaction with total DNAs from leaves and petioles as template and phytoplasma-specific ribosomal RNA primers P1 and P7 (3), or mollicute-specific ribosomal protein (rp) gene primers rpF1 and rpR4 (2). Amplification of a 1.8-kb rDNA or 1.2-kb rp gene product, respectively, confirmed infection of Rosa Linda (7 of 7 plants), Carlsbad (3 of 7), Oso Grande (4 of 4), and a single breeder's accession. No products were amplified from DNAs of healthy plants. Restriction fragment length polymorphism patterns of rDNA digested with AluI, EcoRI, HaeIII, HhaI, HpaII, KpnI, ScaI, or Tru9I endonucleases, or of rp gene products digested with AluI, DraI, RsaI, TaqI, or Tru9I, revealed no differences among phytoplasma strains affecting both Rosa Linda and Carlsbad. Collectively, patterns were comparable to those of clover phyllody and SGP phytoplasmas, two Canadian strains previously classified as members of phytoplasma 16S rRNA (rr)-ribosomal protein (rp) group 16S rI, subgroup C (16S rI-C (rr-rp)) (1). Similarly, no differences were evident among phytoplasmas associated with all four diseased Oso Grande plants. Both rDNA and rp fragment profiles associated with this cultivar were characteristic of strains such as tomato big bud and eastern aster yellows delineated as 16S rI-A (rr-rp) subgroup members (1). However, AluI rDNA and TaqI rp fragment patterns were unique, identifying Oso Grande-infecting strains as representatives of a new subgroup within the larger 16S rI (rr-rp) group. Cumulative rDNA and rp fragment profiles of the phytoplasma associated with the breeder's accession matched those of the Mexican periwinkle virescence phytoplasma, identifying this strain as a 16S rI-I (rr-rp) subgroup member (1) and a second possible etiological agent of SGP. This is the first report of phytoplasmas infecting strawberry in Florida. References: (1) D. E. Gundersen et al. Int. J. Syst. Bacteriol. 46:64, 1996. (2) P.-O. Lim and B. B. Sears. J. Bacteriol. 174:2602, 1993. (3) C. D. Smart et al. Appl. Environ. Microbiol. 62:2988, 1996.

17.
Appl Environ Microbiol ; 59(12): 4180-8, 1993 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-7904440

RESUMEN

We evaluated the restriction fragment length polymorphism of genomic DNA among 53 strains of the phytopathogenic bacterium Pseudomonas syringae pv. syringae. Twenty-nine strains were isolated from beans, and the rest were isolated from 11 other hosts. Southern blots of DNA digested with EcoRI or HindIII were hybridized to two random probes from a cosmid library of P. syringae pv. syringae and a hrp (hypersensitive reaction and pathogenicity) cluster cloned from P. syringae pv. syringae. The size of hybridizing fragments was determined, and a similarity matrix was constructed by comparing strains on a pairwise basis for the presence or absence of fragments. The proportion of shared fragments was then used to estimate sequence divergence. Dendrograms were produced by using the unweighted pair group method with averages and the neighbor-joining method. For the hrp region, BamHI, EcoRI, EcoRV, and HindIII restriction sites were mapped for six representative bean strains and used to construct EcoRI and HindIII restriction maps for all 30 strains pathogenic on beans. Restriction mapping revealed the presence of a 3-kb insertion in nine bean strains and a probable second insertion or deletion event on the left-hand side of the hrp cluster that biased estimates of nucleotide sequence divergence from fragment comparisons. This demonstrated that the determination of phylogenetic relationships among bacteria by using restriction fragment length polymorphism data requires mapping restriction sites to remove the effect of insertion or deletion events on the analysis.(ABSTRACT TRUNCATED AT 250 WORDS)


Asunto(s)
ADN Bacteriano/genética , Ligamiento Genético/genética , Variación Genética/genética , Filogenia , Pseudomonas/genética , Polimorfismo de Longitud del Fragmento de Restricción , Mapeo Restrictivo
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