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In 2017, a 560-ha area of hybrid poplar plantation in northern Poland showed symptoms of tree decline. Leaves appeared smaller, turned yellow-brown, and were shed prematurely. Twigs and smaller branches died. Bark was sunken and discolored, often loosened and split. Trunks decayed from the base. Phloem and xylem showed brown necrosis. Ten per cent of trees died in 1-2 months. None of these symptoms was typical for known poplar diseases. Bacteria in soil and in the necrotic base of poplar trunk were analyzed with Illumina sequencing. Soil and wood were colonized by at least 615 and 249 taxa. The majority of bacteria were common to soil and wood. The most common taxa in soil were: Acidobacteria (14.76%), Actinobacteria (14.58%), Proteobacteria (36.87) with Betaproteobacteria (6.52%), (6.10%), Comamonadaceae (2.79%), and Verrucomicrobia (5.31%).The most common taxa in wood were: Bacteroidetes (22.72%) including Chryseobacterium (5.07%), Flavobacteriales (10.87%), Sphingobacteriales (9.40%) with Pedobacter cryoconitis (7.31%), Proteobacteria (73.79%) with Enterobacteriales (33.25%) including Serratia (15.30%) and Sodalis (6.52%), Pseudomonadales (9.83%) including Pseudomonas (9.02%), Rhizobiales (6.83%), Sphingomonadales (5.65%), and Xanthomonadales (11.19%). Possible pathogens were Pseudomonas, Rhizobium and Xanthomonas. The potential initial, endophytic character of bacteria is discussed. Soil and possibly planting material might be the reservoir of pathogen inoculum.

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In 2017, a 560-ha area of hybrid poplar plantation in northern Poland showed symptoms of tree decline. The leaves appeared smaller, yellow-brown, and were shed prematurely. Twigs and smaller branches died without distinct cankers. Trunks decayed from the base. The phloem and xylem showed brown necrosis. Ten percent of the trees died 1-2 months after the first appearance of the symptoms. None of these symptoms were typical for known poplar diseases. The trees' mycobiota were analysed using Illumina sequencing. A total of 69 467 and 70 218 operational taxonomic units (OTUs) were obtained from the soil and wood. Blastocladiomycota and Chytridiomycota occurred only in the soil, with very low frequencies (0.005% and 0.008%). Two taxa of Glomeromycota, with frequencies of 0.001%, occurred in the wood. In the soil and wood, the frequencies of Zygomycota were 3.631% and 0.006%, the frequencies of Ascomycota were 45.299% and 68.697%, and the frequencies of Basidiomycota were 4.119% and 2.076%. At least 400 taxa of fungi were present. The identifiable Zygomycota, Ascomycota, and Basidiomycota were represented by at least 18, 263 and 81 taxa, respectively. Many fungi were common to the soil and wood, but 160 taxa occurred only in soil and 73 occurred only in wood. The root pathogens included species of Oomycota. The vascular and parenchymal pathogens included species of Ascomycota and of Basidiomycota. The initial endophytic character of the fungi is emphasized. Soil, and possibly planting material, may be the sources of the pathogen inoculum, and climate warming is likely to be a predisposing factor. A water deficit may increase the trees' susceptibility. The epidemiology of poplar vascular wilt reminds grapevine trunk diseases (GTD), including esca, black foot disease and Petri disease.

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So far, there have been no studies on fungal communities in Prunus serotina (black cherry) wood. Our objectives were to characterize fungal communities from P. serotina wood and to evaluate effects of glyphosate (Glifocyd 360 SL) used on P. serotina stumps on abundance, species richness and diversity of those communities. In August 2016, in the Podanin Forest District, stumps of black cherry trees left after felling were treated with the herbicide. Control stumps were treated with water. Wood discs were cut from the surface of the stumps in May and July-August 2017. Eight treatment combinations (2 herbicide treatments × 2 disc sizes × 2 sample times) were tested. Sub-samples were pooled and ground in an acryogenic mill. Environmental DNA was extracted with a Plant Genomic DNA Purification Kit. The ITS1, 5.8S rDNA region was used to identify fungal species, using primers ITS1FI2 5'-GAACCWGCGGARGGATCA-3' and 5.8S 5'-CGCTGCGTT CTTCATCG-3'. The amplicons were sequenced using the Illumina system. The results were subjected to bioinformatic analysis. Sequences were compared with reference sequences from the NCBI database using the BLASTn 2.8.0 algorithm. Abundance of fungi was defined as the number of Operational Taxonomic Units (OTUs), and diversity as the number of species in a sample. Differences between the number of OTUs and taxa were analyzed using the chi-squared test (χ2). Diversity in microbial communities was compared using diversity indices. A total of 54,644 OTUs were obtained. Culturable fungi produced 49,808 OTUs (91.15%), fungi not known from culture had 2571 OTUs (4.70%), non-fungal organisms had 1333 (2.44%) and organisms with no reference sequence in NCBI, 934 OTUs (1.71%). The total number of taxa ranged from 120 to 319. Fungi in stump wood were significantly more abundant in July-August than in May, in stumps >5 cm diameter than in stumps <5 cm diameter, in glyphosate-treated than in untreated stumps when sampled in May, and in untreated than in glyphosate-treated stumps when sampled in July-August. Species richness was significantly greater in July-August than in May, and in stumps >5 cm diameter than in stumps <5 cm diameter, either treated or untreated, depending on size. Herbicides can therefore affect the abundance and diversity of fungal communities in deciduous tree wood. The greater frequency of Ascomycota in herbicide-treated than in untreated stumps indicates their greater tolerance of glyphosate.

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Endophytic fungi were isolated/screened from temperate Taxus baccata (Yew) for production of the anti-cancer drug taxol. Of 242 endophytic fungi isolated from surface-sterilised Yew tree twig segments, only two produced taxol in a defined liquid medium; confirmed by HPLC and LC-MS/MS analyses. They were identified by molecular means by sequencing of ITS1/ITS2 regions and shown to be Paraconiothyrium variabile and Epicoccum nigrum. They produced 1.75 and 1.32 µgL(-1) taxol respectively in a defined medium. Studies focussed on the P. variabile strain as it produced higher taxol amounts. Solute type (NaCl, KCl, Glucose, Glycerol, sorbitol), temperature (20, 25 and 30 (o)C) and water availability (water activity, aw; 0.90-0.99) on growth and taxol production by P. variabile was determined. Growth was similar on media with different solutes (1.0-1.25 mm d(-1)), optimum at 0.99 aw and 25 (o)C. In contrast, optimum taxol production was in a defined medium modified with KCl, at 0.98 aw and 20/25 (o)C, with approx. 2.3 and 7 µgL(-1) respectively. No taxol was produced at <0.96 aw, at 25-30 (o)C, and <0.94 aw at 20 (o)C. This suggests that taxol producing endophytic fungi are in English yew trees and may have potential for utilisation as cell factories for production of this pharmaceutically useful compound.

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A new genus Siepmannia of the Mucoraceae family is described. Siepmannia pineti sp. nov. and S. lariceti sp. nov. were isolated from forest soils in Poland. The species were differentiated on the basis of morphology and ITS1/2 rDNA sequencing. Siepmannia pineti and S. lariceti are identical in some aspects. Both show distinct morphological dimorphism in culture depending on conditions of growth and exhibit distinct mycotrophism manifested by sporulation in the presence of other fungi. Their morphological elements are minute. The phylogenetic grouping of Siepmannia with Absidia parricia and A. zychae leads to the creation of two new combinations, S. parricida and S. zychae.

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Morphological and molecular studies led to the description of Microdochium triticicola as new species isolated from roots of wheat in the United Kingdom. The morphological features of all known Microdochium species are tabulated.

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Morphological and molecular studies led to the description of Heteroconium triticicola as a new species isolated from roots of wheat in the United Kingdom. The new fungus shares with H. citharexyli, the type species of Heteroconium Petrak, features such as superficial mycelium, macronematous, mononematous, unbranched, straight conidiophores, monoblastic, integrated, terminal, cylindrical conidiogenous cells, and catenate, dry, simple, cylindrical, obclavate, often pale brown, smooth, multiseptate conidia. The genus Heteroconium is proposed as an anamorph within Hyaloscyphaceae.

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Lewia hordeicola with Alternaria anamorph was isolated from barley grains in Norway. The fungus is homothallic. It produces fertile ascomata on synthetic nutrient agar (SNA) after long incubation at 4 C in the dark. On PCA its anamorph resembles members of the A. infectoria species group. On SNA L. hordeicola differs from the latter in the shape and size of ascospores, the conidial sporulation patterns, and the shape, size, septation and roughness of conidia. A key to currently known Lewia species is included.

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New information was obtained on the phylogeny of Zygomycetes. PCR-RFLP analysis showed ITS1/2 rDNA to provide appropriate markers for genetic studies on Zygomycetes at the population and species levels. The use of several restriction enzymes allowed discrimination between genera and species of Mortierellales and Mucorales. ITS1/2 sequence analysis clearly indicated a deep, ancient and distinct dichotomy of Mortierellales and Mucorales. The data do not fully support the current concept of Mucorales, which recently included the family Umbelopsidaceae, but support the distinctiveness of the Umbelopsis group, which includes Mortierella turficola. The data support the hypothesis of polyphyly of Absidia and are consistent with the hypothesis of polyphyly of Mucor.

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Penicillium virgatum sp. nov. is described from the soil of a soybean field in New Caledonia. Its delimitation from P. daleae, isolated from forest soils in Poland and Germany, is discussed. The species are differentiated on the basis of morphological features of their cultures in vitro, comparison of the PCR-RFLP profiles with DdeI, HpaII, Sau3A1, and TagI restriction endonucleases, and nucleotide sequences.

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Lewia avenicola sp. nov. (anamorph Alternaria sp.) is described. The fungus was isolated from oat grain in Norway. The fungus produced conidia within a month, and ascomata with fully mature ascospores within 8 months following inoculation, when stored on slants of synthetic nutrient agar (SNA) at 4 degrees C in darkness. A comparison with other known Lewia species is made, and a key to the five known Lewia species is included.

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