RESUMEN
In November 2015, a catastrophic rupture of the Fundão dam in Mariana (Brazil), resulted in extensive socio-economic and environmental repercussions that persist to this day. In response, several reforestation programs were initiated to remediate the impacted regions. However, accurately assessing soil health in these areas is a complex endeavor. This study employs machine learning techniques to predict soil quality indicators that effectively differentiate between the stages of recovery in these areas. For this, a comprehensive set of soil parameters, encompassing 3 biological, 16 chemical, and 3 physical parameters, were evaluated for samples exposed to mining tailings and those unaffected, totaling 81 and 6 samples, respectively, which were evaluated over 2 years. The most robust model was the decision tree with a restriction of fewer levels to simplify the tree structure. In this model, Cation Exchange Capacity (CEC), Microbial Biomass Carbon (MBC), Base Saturation (BS), and Effective Cation Exchange Capacity (eCEC) emerged as the most pivotal factors influencing model fitting. This model achieved an accuracy score of 92% during training and 93% during testing for determining stages of recovery. The model developed in this study has the potential to revolutionize the monitoring efforts conducted by regulatory agencies in these regions. By reducing the number of parameters that necessitate evaluation, this enhanced efficiency promises to expedite recovery monitoring, simultaneously enhancing cost-effectiveness while upholding the analytical rigor of assessments.
Asunto(s)
Ecosistema , Compuestos de Hierro , Suelo/química , Monitoreo del Ambiente , Minería , Brasil , Hierro/análisis , Cationes , Ríos/químicaRESUMEN
Caves are unique environments characterized by spatial limitations, partial or total absence of direct light, and scarcity of organic carbon and nutrients. Caves are shelters for a variety of adapted animals and microorganisms such as fungi, many of which are still unknown. Amphichorda is a fungal genus belonging to the family Bionectriaceae, which includes cave-dwelling and entomopathogenic species with biotechnological applications. In this study, a new fungal species was identified using morphological and multi-locus phylogenetic analyses of the ITS, LSU, and TEF loci, in the Gruta Velha Nova limestone cave located in the Southern Espinhaço Range, Monjolos, Minas Gerais, Brazil. During the exposure of potato dextrose agar plates to the cave environment, an insect from the family Rhaphidophoridae passed by and fed on the culture medium, resulting in three fungal isolates. Phylogenetic analyses showed that these isolates formed a clade distinct from all known species, leading us to introduce a new species, Amphichorda monjolensis, which may be associated with this insect. Here, we also proposed two new combinations for species of acremonium-like fungi in the Bionectriaceae: Bulbithecium globosisporum (synonym: Acremonium globosisporum) and Hapsidospora curva (synonym: Acremonium curvum). The discovery of A. monjolensis highlights the potential of caves as shelters for new species with significant biotechnological importance.
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Cuevas , ADN de Hongos , Filogenia , Cuevas/microbiología , Brasil , ADN de Hongos/genética , Animales , Carbonato de Calcio , Acremonium/genética , Acremonium/clasificación , Acremonium/aislamiento & purificaciónRESUMEN
Caves are underground and natural environments mainly found in rocky terrain. Caves have a very specific microclimate, which benefits the occurrence of specific fungi. In recent studies, researchers have observed that caves harbour a great diversity of fungi. However, studies on fungal diversity in Brazilian caves are still incipient. In September 2019, airborne spore and soil samples were collected from the Monte Cristo cave, in the Southern Espinhaço Range, Diamantina, Minas Gerais state, Brazil. Two Cladosporium single-spore isolates, among other genera, were obtained from these samples. This study aimed to characterise these two fungal isolates based on their DNA sequence data and morphology. Phylogenetic analyses of the rDNA-ITS, ACT and TEF1-α loci revealed that the isolates belonged to the Cladosporium cladosporioides species complex. Both isolates did not cluster with any known species and were formally described and named herein as C. diamantinense and C. speluncae. This study presents taxonomic novelties and contributes to the knowledge about the fungal diversity in Brazilian caves.
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Cladosporium , Brasil , Cladosporium/genética , Filogenia , ADN RibosómicoRESUMEN
Brazilian coffee production relies on the cultivation of Coffea arabica and Coffea canephora. Climate change has been responsible for the decreasing yield of the crops in the country yet the associated microbial community can mitigate these effects by improving plant growth and defense. Although some studies have tried to describe the microorganisms associated with these Coffea species, a study that compares the microbiome on a wider spatial scale is needed for a better understanding of the terroir of each coffee planting region. Therefore, our aim was to evaluate the microbial communities harbored in soils and fruits of these Coffea species in four Brazilian floristic domains (Amazon, Atlantic Forest Caatinga, and Cerrado). One hundred and eight samples (90 of soil and 90 of fruits) were used in the extraction and sequencing of the fungal and bacterial DNA. We detected more than 1000 and 500 bacterial and fungal genera, respectively. Some soil microbial taxa were more closely related to one coffee species than the other species. Bacillus bataviensis tends to occur more in arid soils from the Caatinga, while the fungus Saitozyma sp. was more related to soils cultivated with C. arabica. Thus, the species and the planting region (floristic domain) of coffee affect the microbial composition associated with this crop. This study is the first to report microbial communities associated with coffee produced in four floristic domains that include sites in eight Brazilian states. Data generated by DNA sequencing provides new insights into microbial roles and their potential for the developing more sustainable coffee management, such as the production of biofertilizers and starter culture for fermentation of coffee cherries.
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Coffea , Microbiota , Café , Brasil , Microbiota/genética , SueloRESUMEN
Mushrooms absorb minerals from substrates in which they are cultivated, so they could be used as vehicles of minerals that are deficient in human or animal diets, such as selenium. Selenium deficiency aggravates cardiovascular diseases, diabetes mellitus, and intestinal cancer. This work presents the latest discoveries related to the production of edible mushrooms in selenium-enriched substrates and discusses their use as an alternative to supply the deficiency of this mineral in human and animal diets. Selenized mushrooms and their derived extracts present bioaccessible and bioavailable forms of selenium, as antioxidant and antitumor activity, as demonstrated in various in vitro and in vivo experiments. Consequently, the consumption of these mushrooms reduces the levels of blood cholesterol and glucose. On the other hand, growing mushrooms in selenium-enriched substrates may alter the yield and their chemical composition, and this lack of standardization is still an obstacle to the scale up of the production process. On the other hand, the use of agro-industrial by-products as substrates can enable the cultivation of enriched edible mushrooms and their commercialization.
Asunto(s)
Agaricales , Selenio , Animales , Humanos , Selenio/farmacología , Agaricales/química , Disponibilidad Biológica , Antioxidantes/farmacología , DietaRESUMEN
Tomato plants respond well to potassium fertilization, whose insufficiency leads to a drop in fruit production and quality. On the other hand, the association of growth-promoting fungi (GPF) with roots has been shown to be able to optimize nutrient absorption, which implies lower financial costs and a decreased risk of loss of K applied to the soil. The objective of this study was to investigate the effects of inoculation with GPF and K rates on the postharvest quality of grape tomato hybrid 'Mascot' grown in a hydroponic system. The plants were cultivated in a hydroponic drip system using washed and sterilized sand as substrate. They were trained with two stems, leaving three bunches per stem. The experiment was carried out in a splitsplit-plot arrangement in a completely randomized design with three replicates. Ripe fruits were stored for 30 days in PET containers in storage chambers at a temperature of 25 °C. After 0, 10, 20 and 30 days of storage, five fruits were collected to determine the titratable acidity (TA) and soluble solids (SS), reducing sugars (RS) and vitamin C contents. The K rates provided an increase in the quality attributes. At low K rates, inoculation with GPF led to higher TA, SS, RS and vitamin C values. Inoculation of the plants with GPF improved the postharvest preservation of the fruits, especially when the plants underwent nutritional stress during cultivation.(AU)
O tomateiro responde bem à fertilização potássica, cuja insuficiência acarreta queda na produção e qualidade dos frutos. Por outro lado, a associação de fungos promotores de crescimento (FPC) com raízes tem-se mostrado capaz de otimizar a absorção de nutrientes, o que implica menor custo financeiro e menor risco de perdas do K aplicado ao solo. O objetivo deste trabalho foi estudar os efeitos da inoculação com FPC e de doses de K na qualidade pós-colheita do minitomate hibrido Mascot cultivado em hidroponia. As plantas foram cultivadas em sistema hidropônico de gotejamento, usando areia lavada e esterilizada como substrato. Foram conduzidas com duas hastes, deixando-se três cachos por haste. O experimento foi realizado em parcelas sub-subdividadas e em delineado inteiramente ao acaso, com três repetições. Os frutos maduros foram armazenados por 30 dias em embalagens PET em câmaras de armazenamento à temperatura de 25°C. Após 0, 10, 20 e 30 dias de armazenamento coletaram-se 5 frutos para determinação do teor de sólidos solúveis (SS), acidez titulável (AT), de açúcares redutores (AR) e vitamina C. As doses de K tiveram efeito crescente nos atributos de qualidade. Em baixas doses de K a inoculação com FPC resultou em maiores valores de SS, AT, AR e vitamina C. A inoculação das plantas com FPC promoveu melhor conservação dos frutos na pos-colheita, especialmente quando as plantas sofreram estresse nutricional durante o cultivo.(AU)
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Solanum lycopersicum/crecimiento & desarrollo , Productos Agrícolas , Valor Nutritivo , Simbiosis , CompostajeRESUMEN
Animal-microbe symbioses are often stable for millions of years. An example is the clade consisting of social corbiculate bees-honeybees, bumblebees, and stingless bees-in which a shared ancestor acquired specialized gut bacteria that subsequently diversified with hosts. This model may be incomplete, however, as few microbiomes have been characterized for stingless bees, which are diverse and ecologically dominant pollinators in the tropics. We surveyed gut microbiomes of Brazilian stingless bees, focusing on the genus Melipona, for which we sampled multiple species and biomes. Strikingly, Melipona lacks Snodgrassella and Gilliamella, bacterial symbionts ubiquitous in other social corbiculate bees. Instead, Melipona species harbor more environmental bacteria and bee-specific Starmerella yeasts. Loss of Snodgrassella and Gilliamella may stem from ecological shifts in Melipona or the acquisition of new symbionts as functional replacements. Our findings demonstrate the value of broadly sampling microbiome biodiversity and show that even ancient symbioses can be lost.
Asunto(s)
Gammaproteobacteria , Microbioma Gastrointestinal , Microbiota , Neisseriaceae , Animales , Bacterias/genética , AbejasRESUMEN
The Núcleo de Estudos em Microbiologia Agrícola (NEMA) is an academic-scientific group created by graduate students in the Post Graduate in Agricultural Microbiology in the Department of Microbiology at Universidade Federal de Viçosa, Brazil. NEMA's purposes include promoting and sharing research and knowledge on microbiology in different fields of application. Here, we will comment on our experience in organizing the Summer School on Microbiology and teaching microbiology to undergraduate students during the program. NEMA offers this annual event to disseminate and stimulate knowledge about microbiology for undergraduate students in a participatory, collaborative and interactive way.
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Microbiología/educación , Entrenamiento Simulado/organización & administración , Enseñanza/normas , Brasil , Femenino , Humanos , Masculino , Entrenamiento Simulado/normas , Universidades , Adulto JovenRESUMEN
In recent years, several studies have been developed to understand the impact of fermentation on the final quality of coffee and have indicated that postharvest processing could be a determinant of quality. However, a trend has appeared as a scientific counterpoint, indicating that the interactions between soil, fruit, altitude, and slope exposures with respect to the Sun are important to understand the behavior of the microbiome in coffee. Studies on the microbiota of coffee have addressed its role during the fermentation process, however the knowledge of indigenous microorganisms harbored in fruits and soil of coffee trees growing in fields are essential, as they can contribute to fermentation. Therefore, the aim of this work was to evaluate the influence of topographic and edaphic factors on the bacterial and fungal communities present in the soil and in the fruits of Coffea arabica trees. Samples of fruits and soil were collected from different growing areas at different altitudes and soil conditions. The microbial DNA was extracted and sequenced. The results showed the contribution of environmental factors in the structure of bacterial and fungal communities. The richness, evenness and diversity of the mycobiome and bacteriome were higher in the soil than in the fruits, independent of altitude. In addition, coffee trees at higher altitudes tended to have more bacteria shared between the soil and fruits. The co-occurrence/co-exclusion network showed that bacteria-bacteria connections were greater in higher altitudes. On another hand, fungi-fungi and fungi-bacteria connections were higher in low altitudes. This was the first study that evaluates in deep the influence of environmental factors in the microbiota habiting fruits and soil coffee trees, which may affect the coffee beverage quality.
Asunto(s)
Coffea/microbiología , Café/microbiología , Frutas/microbiología , Microbiología del Suelo , Altitud , Bacterias/aislamiento & purificación , Brasil , Fermentación , Manipulación de Alimentos , Calidad de los Alimentos , Hongos/aislamiento & purificación , MicrobiotaRESUMEN
This work intended to prospect new phytase-producing organisms. In silico genomic analyses allowed the selection of twelve potential phytase-producing fungi. Based on gene sequence, it was possible to identify four well-defined groups of phytate-degrading enzymes: esterase-like, ß-propeller phytases (ßPP), phosphoglycerate mutase-like, and phytases of the histidine acid phosphatases (HAP) family. Analysis of the predicted genes encoding phytases belonging to the HAP family and ßPP phytases and in silico characterization of these enzymes indicated divergence among the catalytic activities. Predicted fungal ßPP phytases exhibited higher molecular mass (around 77 kDa) probably due to the epidermal growth factor-like domain. Twelve sequences of phytases contained signal peptides, of which seven were classified as HAP and five as ßPP phytases, while ten sequences were predicted as phytases secreted by non-classical pathways. These fungi were grown in liquid or semi-solid medium, and the fungal enzymatic extracts were evaluated for their ability to hydrolyze sodium phytate at 50 °C and pH ranging from 2.0 to 9.0. Seven fungi were identified as phytase producers based on phosphate release under enzyme assay conditions. Results obtained from in silico analyses combining experimental enzymatic activities suggest that some selected fungi could secrete ßPP phytases and HAP phytases.
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6-Fitasa/química , Fosfatasa Ácida/química , Proteínas Fúngicas/química , Histidina/química , Alimentación Animal , Biotecnología , Catálisis , Dominio Catalítico , Simulación por Computador , Factor de Crecimiento Epidérmico/química , Fermentación , Genómica , Concentración de Iones de Hidrógeno , Ácido Fítico/metabolismo , Dominios Proteicos , Señales de Clasificación de Proteína , TemperaturaRESUMEN
The genus Tulasnella often forms mycorrhizas with orchids and has worldwide distribution. Species of this genus are associated with a wide range of orchids, including endangered hosts. Initially, species identification relied mostly on morphological features and few cultures were preserved for later phylogenetic comparisons. In this study, a total of 50 Tulasnella isolates were collected from their natural sites in Minas Gerais, Brazil, cultured, and subjected to a phylogenetic analysis based on alignments of sequences of the internal transcribed spacer (ITS) of the nuclear ribosomal DNA. Our results, based on phylogeny, integrated with nucleotide divergence and morphology, revealed the diversity of isolated Tulasnella species, which included four new species, namely, Tulasnella brigadeiroensis, Tulasnella hadrolaeliae, Tulasnella orchidis and Tulasnella zygopetali. The conservation of these species is important due to their association with endangered orchid hosts and endemic features in the Brazilian Atlantic Forest.
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Basidiomycota/genética , Basidiomycota/aislamiento & purificación , Brasil , ADN Ribosómico/genética , ADN Espaciador Ribosómico/genética , Bosques , Orchidaceae/microbiología , FilogeniaRESUMEN
Agroecology aims to maintain ecosystem services by minimizing the impact of agriculture and promoting the use of biological potential. Arbuscular mycorrhizal fungi (AMF) are elements which are key to improving crop productivity and soil quality. It is pertinent to understand how agricultural management in the tropics affects the AMF spatio-temporal community composition, especially in crops of global importance, such as coffee (Coffea arabica L.). Soil and root samples were collected from three localities under three management systems (agroecological, conventional and forest fragment), during the phenological stages of coffee (flowering, grain filling, harvesting). Spores were extracted for morphological identification and molecular community analysis by PCR-DGGE. Dendrograms were prepared and the bands were sequenced and analyzed by bioinformatics. No differences were observed in the richness of morphospecies between management systems, localities and period, but little is known about tropical species. Molecular analysis showed that the agroecological management system was similar to natural forest and with a higher diversity indices than conventional management. Locality and period of sample affect AMF community composition. It is necessary to associate classical taxonomic evaluations with molecular biological techniques because different approaches can lead to different outcomes. This study contributes to the understanding of the impact of agriculture management systems on AMF and provides evidence that agroecology is a management system applicable to sustainable coffee production.
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Ecosistema , Micorrizas/genética , Micorrizas/patogenicidad , Agricultura/métodos , Coffea/microbiología , Biología Computacional , Productos Agrícolas/microbiología , Micorrizas/clasificación , Reacción en Cadena de la Polimerasa , Microbiología del SueloRESUMEN
ABSTRACT The multi-enzyme complex (crude extract) of white rot fungi Pleurotus ostreatus, Pleurotus eryngii, Trametes versicolor, Pycnosporus sanguineus and Phanerochaete chrysosporium were characterized, evaluated in the hydrolysis of pretreated pulps of sorghum straw and compared efficiency with commercial enzyme. Most fungi complexes had better hydrolysis rates compared with purified commercial enzyme.
Asunto(s)
Proteínas Fúngicas/química , Sorghum/química , Celulasas/química , Hongos/enzimología , Lignina/química , Proteínas Fúngicas/metabolismo , Tallos de la Planta/microbiología , Tallos de la Planta/química , Sorghum/microbiología , Celulasas/metabolismo , Biocatálisis , Hongos/química , Hidrólisis , Lignina/metabolismoRESUMEN
The multi-enzyme complex (crude extract) of white rot fungi Pleurotus ostreatus, Pleurotus eryngii, Trametes versicolor, Pycnosporus sanguineus and Phanerochaete chrysosporium were characterized, evaluated in the hydrolysis of pretreated pulps of sorghum straw and compared efficiency with commercial enzyme. Most fungi complexes had better hydrolysis rates compared with purified commercial enzyme.(AU)
RESUMEN
The multi-enzyme complex (crude extract) of white rot fungi Pleurotus ostreatus, Pleurotus eryngii, Trametes versicolor, Pycnosporus sanguineus and Phanerochaete chrysosporium were characterized, evaluated in the hydrolysis of pretreated pulps of sorghum straw and compared efficiency with commercial enzyme. Most fungi complexes had better hydrolysis rates compared with purified commercial enzyme.
Asunto(s)
Celulasas/química , Proteínas Fúngicas/química , Hongos/enzimología , Lignina/química , Sorghum/química , Biocatálisis , Celulasas/metabolismo , Proteínas Fúngicas/metabolismo , Hongos/química , Hidrólisis , Lignina/metabolismo , Tallos de la Planta/química , Tallos de la Planta/microbiología , Sorghum/microbiologíaRESUMEN
The majority of the textile dyes are harmful to the environment and potentially carcinogenic. Among strategies for their exclusion, the treatment of dye contaminated wastewater with fungal extract, containing lignin peroxidase (LiP), may be useful. Two fungi isolates, Pleurotus ostreatus (PLO9) and Ganoderma lucidum (GRM117), produced the enzymatic extract by fermentation in the lignocellulosic residue, Jatropha curcas seed cake. The extracts from PLO9 and GRM117 were immobilized on carbon nanotubes and showed an increase of 18 and 27-fold of LiP specific activity compared to the free enzyme. Also, LiP from both fungi extracts showed higher Vmax and lower Km values. Only the immobilized extracts could be efficiently reused in the dye decolourization, contrary, the carbon nanotubes became saturated and they should be discarded over time. This device may offer a final biocatalyst with higher catalytic efficiency and capability to be reused in the dye decolourization process.
RESUMEN
We studied the biodegradation of green polyethylene (GP) by Pleurotus ostreatus. The GP was developed from renewable raw materials to help to reduce the emissions of greenhouse gases. However, little information regarding the biodegradation of GP discarded in the environment is available. P. ostreatus is a lignocellulolytic fungus that has been used in bioremediation processes for agroindustrial residues, pollutants, and recalcitrant compounds. Recently, we showed the potential of this fungus to degrade oxo-biodegradable polyethylene. GP plastic bags were exposed to sunlight for up to 120 days to induce the initial photodegradation of the polymers. After this period, no cracks, pits, or new functional groups in the structure of GP were observed. Fragments of these bags were used as the substrate for the growth of P. ostreatus. After 30 d of incubation, physical and chemical alterations in the structure of GP were observed. We conclude that the exposure of GP to sunlight and its subsequent incubation in the presence of P. ostreatus can decrease the half-life of GP and facilitate the mineralization of these polymers.
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Biodegradación Ambiental , Pleurotus/metabolismo , Polietileno/metabolismoRESUMEN
In this study, we evaluated the growth of Pleurotus ostreatus PLO6 using oxo-biodegradable plastics as a carbon and energy source. Oxo-biodegradable polymers contain pro-oxidants that accelerate their physical and biological degradation. These polymers were developed to decrease the accumulation of plastic waste in landfills. To study the degradation of the plastic polymers, oxo-biodegradable plastic bags were exposed to sunlight for up to 120 days, and fragments of these bags were used as substrates for P. ostreatus. We observed that physical treatment alone was not sufficient to initiate degradation. Instead, mechanical modifications and reduced titanium oxide (TiO2) concentrations caused by sunlight exposure triggered microbial degradation. The low specificity of lignocellulolytic enzymes and presence of endomycotic nitrogen-fixing microorganisms were also contributing factors in this process.
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Plásticos Biodegradables/metabolismo , Pleurotus/metabolismo , Polímeros/metabolismo , Luz Solar , Plásticos Biodegradables/química , Biodegradación Ambiental/efectos de la radiación , Celulosa/metabolismo , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Lignina/metabolismo , Metales Pesados/metabolismo , Microscopía Electrónica de Rastreo , Fijación del Nitrógeno , Oxidorreductasas/genética , Oxidorreductasas/metabolismo , Pleurotus/genética , Pleurotus/ultraestructura , Polímeros/química , Eliminación de Residuos/métodos , Espectroscopía Infrarroja por Transformada de Fourier , Factores de Tiempo , Titanio/metabolismo , Difracción de Rayos XRESUMEN
Eucalypt cultivation is an important economic activity worldwide. In Portugal, Eucalyptus globulus plantations account for one-third of the total forested area. The nutritional requirements of this crop have been well studied, and nitrogen (N) is one of the most important elements required for vegetal growth. N dynamics in soils are influenced by microorganisms, such as diazotrophic bacteria (DB) that are responsible for biological nitrogen fixation (BNF), so the aim of this study was to evaluate and identity the main groups of DB in E. globulus plantations. Samples of soil and root systems were collected in winter and summer from three different Portuguese regions (Penafiel, Gavião and Odemira). We observed that DB communities were affected by season, N fertilization and moisture. Furthermore Bradyrhizobium and Burkholderia were the most prevalent genera in these three regions. This is the first study describing the dynamic of these bacteria in E. globulus plantations, and these data will likely contribute to a better understanding of the nutritional requirements of eucalypt cultivation and associated organic matter turnover.
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Bacterias/metabolismo , Eucalyptus/microbiología , Fijación del Nitrógeno , Microbiología del Suelo , Electroforesis en Gel de Gradiente Desnaturalizante , Ambiente , Geografía , Nitrógeno/química , Raíces de Plantas/microbiología , Reacción en Cadena de la Polimerasa , Portugal , Análisis de Componente Principal , Suelo , Especificidad de la EspecieRESUMEN
The interaction between fungi and plants that form ectomycorrhizae (ECM) promotes alterations in the gene expression profiles of both organisms. Fungal genes expression related to metabolism were evaluated at the pre-symbiotic stage and during the ECM development between Scleroderma laeve and Eucalyptus grandis. Partial sequences of ATP synthase (atp6), translation elongation factor (ef1α), the RAS protein (ras), and the 17S rDNA genes were isolated. The expression of the atp6 and 17S rDNA genes during the pre-symbiotic stage showed an approximately threefold increase compared to the control. During ECM development, the expression of the 17S rDNA gene showed a 4.4-fold increase after 3 days of contact, while the expression of the atp6 gene increased 7.23-fold by the 15th day, suggesting that protein synthesis and respiratory chain activities are increased during the formation of the mantle and the Hartig net. The ras gene transcripts were only detected by RT-PCR 30 days after fungus-plant contact, suggesting that RAS-mediated signal transduction pathways are functional during the establishment of symbiosis. The present study demonstrates that alterations in gene expression occur in response to stimuli released by the plant during ECM association and increases the understanding of the association between S. laeve and E. grandis.