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1.
J Phys Chem B ; 116(45): 13472-5, 2012 Nov 15.
Artículo en Inglés | MEDLINE | ID: mdl-23102116

RESUMEN

The stochastic nature of the nucleation of a supercooled solution is not always realized or well-defined. There exists an inherent spread of nucleation temperatures of any given sample which is repeatedly supercooled, frozen, and then thawed, in the same container, even when the nucleation is occurring at the same site. Classical nucleation theory predicts such a spread but does not provide any molecular level interpretation for the value of the spread and thus it has been the subject of some speculation. This report shows that there is a lower limit to the value of the spread which is related neither to the efficiency of the best nucleation site nor the number of times the sample is cooled and the nucleation temperature measured.

2.
J Phys Chem B ; 114(39): 12585-8, 2010 Oct 07.
Artículo en Inglés | MEDLINE | ID: mdl-20839818

RESUMEN

Workman-Reynolds freezing potentials have been measured across the interface between ice and dilute NaCl solutions as a function of ice growth rate for three salt concentrations. Growth rates of up to 40 µm·s(-1) are used, and it is found that the measured voltage peaks at rates of ∼25 µm·s(-1). Our initial results indicate that the freezing potential can be used as a probe into various aspects of the DC electrical resistance of ice as a function of variables such as salt concentration.


Asunto(s)
Congelación , Cloruro de Sodio/química , Hielo , Cinética
3.
Phys Chem Chem Phys ; 11(15): 2679-82, 2009 Apr 21.
Artículo en Inglés | MEDLINE | ID: mdl-19421525

RESUMEN

We investigate the effect of solute concentration on the heterogeneous ice nucleation temperature (T(het)) of aqueous solutions of both NaCl and d-glucose. An automatic lag time apparatus (ALTA) technique allows the dependence of T(het) on solute concentration to be determined with statistical significance. Our results point to the solute-induced lowering of T(het) being a factor of two times the equivalent melting point depression at any fixed concentration, the same factor reported for homogeneous nucleation experiments with small molecular weight solutes.

4.
Cryo Letters ; 30(2): 96-9, 2009.
Artículo en Inglés | MEDLINE | ID: mdl-19448858

RESUMEN

We use an automatic lag time apparatus to show that an electric field of 5*10(4) V/m-1 appears to have no effect on the nucleation of supercooled water. Previously reported effects at similar magnitude fields are most likely due to the inherent stochastic nature of liquid to solid nucleation.


Asunto(s)
Electricidad , Hielo , Agua/química , Frío , Cristalización , Procesos Estocásticos
6.
J Phys Chem B ; 112(37): 11750-5, 2008 Sep 18.
Artículo en Inglés | MEDLINE | ID: mdl-18720967

RESUMEN

Workman-Reynolds freezing potentials have been measured for the first time across the interface between single crystals of ice 1h and dilute electrolyte solutions. The measured electric potential is a strictly nonequilibrium phenomenon and a function of the concentration of salt, freezing rate, orientation of the ice crystal, and time. When all these factors are controlled, the voltage is reproducible to the extent expected with ice growth experiments. Zero voltage is obtained with no growth or melting. For rapidly grown ice 1h basal plane in contact with a solution of 10 (-4) M NaCl the maximum voltage exceeds 30 V and decreases to zero at both high and low salt concentrations. These single-crystal experiments explain much of the data captured on this remarkable phenomenon since 1948.

7.
Biophys J ; 93(5): 1442-51, 2007 Sep 01.
Artículo en Inglés | MEDLINE | ID: mdl-17526572

RESUMEN

Antifreeze proteins (AFPs) protect many plants and organisms from freezing in low temperatures. Of the different AFPs, the most studied AFP Type I from winter flounder is used in the current computational studies to gain molecular insight into its adsorption at the ice/water interface. Employing molecular dynamics simulations, we calculate the free energy difference between the hydrophilic and hydrophobic faces of the protein interacting with ice. Furthermore, we identify three properties of Type I "antifreeze" proteins that discriminate among these two orientations of the protein at the ice/water interface. The three properties are: the "surface area" of the protein; a measure of the interaction of the protein with neighboring water molecules as determined by the number of hydrogen bond count, for example; and the side-chain orientation angles of the threonine residues. All three discriminants are consistent with our free energy results, which clearly show that the hydrophilic protein face orientations toward the ice/water interface, as hypothesized from experimental and ice/vacuum simulations, are incorrect and support the hypothesis that the hydrophobic face is oriented toward the ice/water interface. The adsorption free energy is calculated to be 2-3 kJ/mol.


Asunto(s)
Proteínas Anticongelantes/química , Biofisica/métodos , Hielo , Proteínas/química , Agua/química , Alanina/química , Algoritmos , Asparagina/química , Sitios de Unión , Simulación por Computador , Enlace de Hidrógeno , Conformación Molecular , Oxígeno/química , Termodinámica , Treonina/química
8.
J Phys Chem A ; 109(50): 11354-7, 2005 Dec 22.
Artículo en Inglés | MEDLINE | ID: mdl-16354021

RESUMEN

Polarized light passing through a supercooled binary liquid mixture sample is analyzed during the moment of the nucleation of the crystal phase to determine whether the stable equilibrium crystal is nucleated, or whether a transient phase of different composition or broken-symmetry is formed. This experiment is performed for the particular case of heterogeneous nucleation of a supercooled clathrate-forming liquid mixture, tetrahydrofuran (THF)/water, compared with ice nucleating from pure supercooled water. The new experimental results are consistent with the hypothesis that the equilibrium clathrate hydrate crystal is nucleated directly, with no transient phase detected on the time scale of these experiments.

9.
J Chem Phys ; 123(3): 34706, 2005 Jul 15.
Artículo en Inglés | MEDLINE | ID: mdl-16080754

RESUMEN

Molecular-dynamics simulations of Cl(-) and Na(+) ions are performed to calculate ionic solvation free energies in both bulk simple point-charge/extended water and ice 1 h at several different temperatures, and at the basal ice 1 h/water interface. For the interface we calculate the free energy of "transfer" of the ions across the ice/water interface. For the ions in bulk water in the NPT ensemble at 298 K and 1 atm, results are found to be in good agreement with experiments, and with other simulation results. Simulations performed in the NVT ensemble are shown to give equivalent solvation free energies, and this ensemble is used for the interfacial simulations. Solvation free energies of Cl(-) and Na(+) ions in ice at 150 K are found to be approximately 30 and approximately 20 kcal mol(-1), respectively, less favorable than for water at room temperature. Near the melting point of the model the solvation of the ions in water is the same (within statistical error) as that measured at room temperature, and in the ice is equivalent and approximately 10 kcal mol(-1) less favorable than the liquid. The free energy of transfer for each ion across ice/water interface is calculated and is in good agreement with the bulk observations for the Cl(-) ion. However, for the model of Na(+) the long-range electrostatic contribution to the free energy was more negative in the ice than the liquid, in contrast with the results observed in the bulk calculations.

10.
J Air Waste Manag Assoc ; 54(11): 1360-71, 2004 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-15587550

RESUMEN

In the last 5 yr, the capabilities of earth-observing satellites and the technological tools to share and use satellite data have advanced sufficiently to consider using satellite imagery in conjunction with ground-based data for urban-scale air quality monitoring. Satellite data can add synoptic and geospatial information to ground-based air quality data and modeling. An assessment of the integrated use of ground-based and satellite data for air quality monitoring, including several short case studies, was conducted. Findings identified current U.S. satellites with potential for air quality applications, with others available internationally and several more to be launched within the next 5 yr; several of these sensors are described in this paper as illustrations. However, use of these data for air quality applications has been hindered by historical lack of collaboration between air quality and satellite scientists, difficulty accessing and understanding new data, limited resources and agency priorities to develop new techniques, ill-defined needs, and poor understanding of the potential and limitations of the data. Specialization in organizations and funding sources has limited the resources for cross-disciplinary projects. To successfully use these new data sets requires increased collaboration between organizations, streamlined access to data, and resources for project implementation.


Asunto(s)
Contaminantes Atmosféricos/análisis , Modelos Teóricos , Nave Espacial , Ciudades , Monitoreo del Ambiente/métodos , Tamaño de la Partícula
11.
Biophys J ; 85(6): 3475-84, 2003 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-14645043

RESUMEN

Valproic acid is a short branched fatty acid used as an anticonvulsant drug whose therapeutic action has been proposed to arise from membrane-disordering properties. Static and kinetic properties of valproic acid interacting with fully hydrated dipalmitoyl phosphatidylcholine lipid bilayers are studied using molecular-dynamics simulations. We calculate spatially resolved free energy profiles and local diffusion coefficients using the distance between the bilayer and valproic acid respective centers-of-mass along the bilayer normal as reaction coordinate. To investigate the pH dependence, we calculate profiles for the neutral valproic acid as well as its water-soluble anionic conjugate base valproate. The local diffusion constants for valproate/valproic acid along the bilayer normal are found to be approximately 10(-6) to 10(-5) cm2 s(-1). Assuming protonation of valproic acid upon association with--or insertion into--the lipid bilayer, we calculate the permeation coefficient to be approximately 2.0 10(-3) cm s(-1), consistent with recent experimental estimates of fast fatty acid transport. The ability of the lipid bilayer to sustain local defects such as water intrusions stresses the importance of going beyond mean field and taking into account correlation effects in theoretical descriptions of bilayer translocation processes.


Asunto(s)
1,2-Dipalmitoilfosfatidilcolina/química , Membrana Dobles de Lípidos/química , Ácido Valproico/farmacología , Anticonvulsivantes/farmacología , Transporte Biológico , Fenómenos Biofísicos , Biofisica , Simulación por Computador , Difusión , Ácidos Grasos/metabolismo , Concentración de Iones de Hidrógeno , Cinética , Membrana Dobles de Lípidos/metabolismo , Modelos Estadísticos , Unión Proteica , Transporte de Proteínas , Programas Informáticos , Termodinámica
12.
FEBS Lett ; 551(1-3): 13-9, 2003 Sep 11.
Artículo en Inglés | MEDLINE | ID: mdl-12965197

RESUMEN

The effect of four synthetic analogues of the 37-residue winter flounder type I antifreeze protein (AFP), which contain four Val, Ala or Ile residues in place of Thr residues at positions 2, 13, 24 and 37 and two additional salt bridges, on the binary lipid system prepared from a 1:1 mixture of the highly unsaturated DGDG and saturated DMPC has been determined using FTIR spectroscopy. In contrast to the natural protein, which increases the thermotropic phase transition, the Thr, Val and Ala analogues decreased the thermotropic phase transitions of the liposomes by 2.2 degrees Celsius, 3.4 degrees Celsius and 2.4 degrees Celsius, while the Ile analogue had no effect on the transition. Experiments performed using perdeuterated DMPC showed that the Ala and Thr peptides interacted preferentially with the DGDG in the lipid mixture, while the Val peptide showed no preference for either lipid. The results are consistent with interactions involving the hydrophobic face of type I AFPs and model bilayers, i.e. the same face of the protein that is responsible for antifreeze properties. The different effects correlate with the helicity of the peptides and suggest that the solution conformation of the peptides has a significant role in determining the effects of the peptides on thermotropic membrane phase transitions.


Asunto(s)
Proteínas Anticongelantes Tipo I/química , Proteínas Anticongelantes Tipo I/farmacología , Membrana Dobles de Lípidos/química , Secuencia de Aminoácidos , Animales , Proteínas Anticongelantes Tipo I/genética , Dimiristoilfosfatidilcolina/química , Dimiristoilfosfatidilcolina/farmacología , Lenguado , Interacciones Hidrofóbicas e Hidrofílicas , Modelos Moleculares , Mutación , Conformación Proteica , Alineación de Secuencia , Espectroscopía Infrarroja por Transformada de Fourier , Temperatura
13.
Environ Int ; 29(2-3): 377-83, 2003 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-12676230

RESUMEN

A coupled numerical model of the atmospheric thermo-hydrodynamics and pollutant photochemical transport is described. This model can be used to study the complex relationships between the chemical and thermo-hydrodynamic processes in the atmosphere of urban areas with an emphasis on photochemical ozone formation. Preliminary numerical results of ozone and other key chemical atmospheric pollutant concentrations and distribution across the Houston-Galveston-Brazoria area using virtual emission data from area and mobile sources are presented.


Asunto(s)
Contaminantes Atmosféricos , Modelos Teóricos , Oxidantes Fotoquímicos , Ozono , Movimientos del Aire , Ciudades , Fotoquímica , Temperatura , Texas
14.
Cryobiology ; 46(1): 88-98, 2003 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-12623031

RESUMEN

In biological systems, nucleation of ice from a supercooled aqueous solution is a stochastic process and always heterogeneous. The average time any solution may remain supercooled is determined only by the degree of supercooling and heterogeneous nucleation sites it encounters. Here we summarize the many and varied definitions of the so-called "supercooling point," also called the "temperature of crystallization" and the "nucleation temperature," and exhibit the natural, inherent width associated with this quantity. We describe a new method for accurate determination of the supercooling point, which takes into account the inherent statistical fluctuations of the value. We show further that many measurements on a single unchanging sample are required to make a statistically valid measure of the supercooling point. This raises an interesting difference in circumstances where such repeat measurements are inconvenient, or impossible, for example for live organism experiments. We also discuss the effect of solutes on this temperature of nucleation. Existing data appear to show that various solute species decrease the nucleation temperature somewhat more than the equivalent melting point depression. For non-ionic solutes the species appears not to be a significant factor whereas for ions the species does affect the level of decrease of the nucleation temperature.


Asunto(s)
Cristalización , Hielo , Glucosa/química , Glicerol/química , Iones , Reproducibilidad de los Resultados , Cloruro de Sodio/química , Soluciones , Propiedades de Superficie , Temperatura , Factores de Tiempo , Urea/química , Agua/química
15.
Eur J Biochem ; 270(7): 1381-92, 2003 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-12653993

RESUMEN

Antifreeze glycoproteins (AFGPs) constitute the major fraction of protein in the blood serum of Antarctic notothenioids and Arctic cod. Each AFGP consists of a varying number of repeating units of (Ala-Ala-Thr)n, with minor sequence variations, and the disaccharide beta-D-galactosyl-(1-->3)-alpha-N-acetyl-D-galactosamine joined as a glycoside to the hydroxyl oxygen of the Thr residues. These compounds allow the fish to survive in subzero ice-laden polar oceans by kinetically depressing the temperature at which ice grows in a noncolligative manner. In contrast to the more widely studied antifreeze proteins, little is known about the mechanism of ice growth inhibition by AFGPs, and there is no definitive model that explains their properties. This review summarizes the structural and physical properties of AFGPs and advances in the last decade that now provide opportunities for further research in this field. High field NMR spectroscopy and molecular dynamics studies have shown that AFGPs are largely unstructured in aqueous solution. While standard carbohydrate degradation studies confirm the requirement of some of the sugar hydroxyls for antifreeze activity, the importance of following structural elements has not been established: (a) the number of hydroxyls required, (b) the stereochemistry of the sugar hydroxyls (i.e. the requirement of galactose as the sugar), (c) the acetamido group on the first galactose sugar, (d) the stereochemistry of the beta-glycosidic linkage between the two sugars and the alpha-glycosidic linkage to Thr, (e) the requirement of a disaccharide for activity, and (f) the Ala and Thr residues in the polypeptide backbone. The recent successful synthesis of small AFGPs using solution methods and solid-phase chemistry provides the opportunity to perform key structure-activity studies that would clarify the important residues and functional groups required for activity. Genetic studies have shown that the AFGPs present in the two geographically and phylogenetically distinct Antarctic notothenioids and Arctic cod have evolved independently, in a rare example of convergent molecular evolution. The AFGPs exhibit concentration dependent thermal hysteresis with maximum hysteresis (1.2 degrees C at 40 mg x mL-1) observed with the higher molecular mass glycoproteins. The ability to modify the rate and shape of crystal growth and protect cellular membranes during lipid-phase transitions have resulted in identification of a number of potential applications of AFGPs as food additives, and in the cryopreservation and hypothermal storage of cells and tissues.


Asunto(s)
Proteínas Anticongelantes/química , Animales , Regiones Antárticas , Proteínas Anticongelantes/biosíntesis , Proteínas Anticongelantes/clasificación , Proteínas Anticongelantes/genética , Regiones Árticas , Metabolismo de los Hidratos de Carbono , Carbohidratos/química , Peces , Espectroscopía de Resonancia Magnética , Conformación Proteica
16.
Proc Natl Acad Sci U S A ; 99(15): 9631-4, 2002 Jul 23.
Artículo en Inglés | MEDLINE | ID: mdl-12114536

RESUMEN

The statistics of liquid-to-crystal nucleation are measured rigorously by using a recently developed automated lag-time apparatus (ALTA). A single sample, in this case a sample of pure water both with and without an (insoluble) AgI crystal, is repeatedly cooled, nucleated, and thawed. Analysis of the data, coupled with a second kind of experiment, shows that the statistics of nucleation are consistent with a first-order kinetic mechanism over a wide range of supercooling temperatures. The limitations of classical nucleation theory are exhibited. Our analysis unifies many related experiments in biology, physics, chemistry, and chemical engineering.


Asunto(s)
Agua/química , Catálisis , Cristalización , Cinética , Termodinámica
17.
J Biol Chem ; 277(27): 24073-80, 2002 Jul 05.
Artículo en Inglés | MEDLINE | ID: mdl-11940576

RESUMEN

A number of structurally diverse classes of "antifreeze" proteins that allow fish to survive in sub-zero ice-laden waters have been isolated from the blood plasma of cold water teleosts. However, despite receiving a great deal of attention, the one or more mechanisms through which these proteins act are not fully understood. In this report we have synthesized a type I antifreeze polypeptide (AFP) from the shorthorn sculpin Myoxocephalus scorpius using recombinant methods. Construction of a synthetic gene with optimized codon usage and expression as a glutathione S-transferase fusion protein followed by purification yielded milligram amounts of polypeptide with two extra residues appended to the N terminus. Circular dichroism and NMR experiments, including residual dipolar coupling measurements on a 15N-labeled recombinant polypeptide, show that the polypeptides are alpha-helical with the first four residues being more flexible than the remainder of the sequence. Both the recombinant and synthetic polypeptides modify ice growth, forming facetted crystals just below the freezing point, but display negligible thermal hysteresis. Acetylation of Lys-10, Lys-20, and Lys-21 as well as the N terminus of the recombinant polypeptide gave a derivative that displays both thermal hysteresis (0.4 degrees C at 15 mg/ml) and ice crystal faceting. These results confirm that the N terminus of wild-type polypeptide is functionally important and support our previously proposed mechanism for all type I proteins, in which the hydrophobic face is oriented toward the ice at the ice/water interface.


Asunto(s)
Proteínas Anticongelantes/química , Proteínas de Peces , Hielo , Secuencia de Aminoácidos , Animales , Proteínas Anticongelantes/genética , Secuencia de Bases , Dicroismo Circular , Cartilla de ADN , Genes Sintéticos , Espectroscopía de Resonancia Magnética , Microscopía por Video , Datos de Secuencia Molecular , Conformación Proteica , Proteínas Recombinantes/biosíntesis , Escorpiones , Soluciones
18.
Eur J Biochem ; 269(4): 1259-66, 2002 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-11856360

RESUMEN

The solution structure of a synthetic mutant type I antifreeze protein (AFP I) was determined in aqueous solution at pH 7.0 using nuclear magnetic resonance (NMR) spectroscopy. The mutations comprised the replacement of the four Thr residues by Val and the introduction of two additional Lys-Glu salt bridges. The antifreeze activity of this mutant peptide, VVVV2KE, has been previously shown to be similar to that of the wild type protein, HPLC6 (defined here as TTTT). The solution structure reveals an alphahelix bent in the same direction as the more bent conformer of the published crystal structure of TTTT, while the side chain chi1 rotamers of VVVV2KE are similar to those of the straighter conformer in the crystal of TTTT. The Val side chains of VVVV2KE assume the same orientations as the Thr side chains of TTTT, confirming the conservative nature of this mutation. The combined data suggest that AFP I undergoes an equilibrium between straight and bent helices in solution, combined with independent equilibria between different side chain rotamers for some of the amino acid residues. The present study presents the first complete sequence-specific resonance assignments and the first complete solution structure determination by NMR of any AFP I protein.


Asunto(s)
Proteínas Anticongelantes Tipo I/química , Animales , Lenguado , Interacciones Hidrofóbicas e Hidrofílicas , Modelos Moleculares , Resonancia Magnética Nuclear Biomolecular , Estructura Secundaria de Proteína , Proteínas Recombinantes/química , Soluciones
19.
FEBS Lett ; 491(3): 285-8, 2001 Mar 02.
Artículo en Inglés | MEDLINE | ID: mdl-11240143

RESUMEN

The synthesis, solution conformation and ice-growth inhibition properties of four new analogues of the type I 37-residue winter flounder 'antifreeze' protein are reported. All four analogues contain two extra salt bridges to facilitate comparison of results with previously published data. In two analogues, all four threonine residues in the native polypeptide were mutated to 2-amino butyric acid (an unnatural amino acid) and isoleucine, respectively. The butyric acid analogue was approximately 85% helical at 3 degrees C, modified the shape of ice growth, and exhibited reduced hysteresis compared to the native protein (9% at 4 mM). These results show that the gamma-methyl group of threonine, which is present in the sidechain of 2-amino butyric acid, is not sufficient for activity. The isoleucine analogue, in which the threonine hydroxyl group is replaced by an ethyl group, was 100% helical at 3 degrees C, showed no hysteresis but was able to modify the shape of ice crystal growth. In the third and fourth analogues, mutations of the aspartic acids 1 and 5 to alanine, and asparagines 16 and 27 to leucine in the threonine- and valine-substituted analogues did not affect the helicity of the polypeptides, but removed the ability to inhibit ice growth.


Asunto(s)
Proteínas Anticongelantes/química , Ingeniería de Proteínas , Alanina/química , Sustitución de Aminoácidos/fisiología , Aminobutiratos/química , Animales , Proteínas Anticongelantes/síntesis química , Asparagina/química , Ácido Aspártico/química , Lenguado , Congelación , Hielo , Isoleucina/química , Leucina/química , Estructura Secundaria de Proteína/fisiología , Relación Estructura-Actividad , Treonina/química
20.
Biophys J ; 77(5): 2850-5, 1999 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-10545382

RESUMEN

Premelting at the surface of ice crystals is caused by factors such as temperature, radius of curvature, and solute composition. When polycrystalline ice samples are warmed from well below the equilibrium melting point, surface melting may begin at temperatures as low as -15 degrees C. However, it has been reported (Bronshteyn and Steponkus, 1993. Biophys. J. 65:1853-1865) that when polycrystalline ice was warmed in a differential scanning calorimetry (DSC) pan, melting began at about -50 degrees C, this extreme behavior being attributed to short-range forces. We show that there is no driving force for such premelting, and that for pure water samples in DSC pans curvature effects will cause premelting typically at just a few degrees below the equilibrium melting point. We also show that the rate of warming affects the slope of the DSC baseline and that this might be incorrectly interpreted as an endotherm. The work has consequences for DSC operators who use water as a standard in systems where subfreezing runs are important.


Asunto(s)
Rastreo Diferencial de Calorimetría/métodos , Hielo , Transición de Fase , Temperatura
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