RESUMEN
To obtain chemical clues on the process of bioactivation by cytochromes P450 1A1 and 1B1, some QSAR studies were carried out based on cellular experiments of the metabolic activation of polycyclic aromatic hydrocarbons and heterocyclic aromatic compounds by those enzymes. Firstly, the 3D structures of cytochromes 1A1 and 1B1 were built using homology modelling with a cytochrome 1A2 template. Using these structures, 32 ligands including heterocyclic aromatic compounds, polycyclic aromatic hydrocarbons and corresponding diols, were docked with LigandFit and CDOCKER algorithms. Binding mode analysis highlighted the importance of hydrophobic interactions and the hydrogen bonding network between cytochrome amino acids and docked molecules. Finally, for each enzyme, multilinear regression and artificial neural network QSAR models were developed and compared. These statistical models highlighted the importance of electronic, structural and energetic descriptors in metabolic activation process, and could be used for virtual screening of ligand databases. In the case of P450 1A1, the best model was obtained with artificial neural network analysis and gave an r (2) of 0.66 and an external prediction [Formula: see text] of 0.73. Concerning P450 1B1, artificial neural network analysis gave a much more robust model, associated with an r (2) value of 0.73 and an external prediction [Formula: see text] of 0.59.
Asunto(s)
Hidrocarburo de Aril Hidroxilasas/metabolismo , Carcinógenos/metabolismo , Citocromo P-450 CYP1A1/metabolismo , Hidrocarburos Policíclicos Aromáticos/química , Hidrocarburos Policíclicos Aromáticos/metabolismo , Relación Estructura-Actividad Cuantitativa , Algoritmos , Biotransformación , Dominio Catalítico , Citocromo P-450 CYP1B1 , Humanos , Enlace de Hidrógeno , Modelos Lineales , Modelos Moleculares , Redes Neurales de la Computación , Unión Proteica , Proteínas RecombinantesRESUMEN
For centuries, rosemary (Rosmarinus officinalis L.) has been used to prepare essential oils which, even now, are highly valued due to their various biological activities. Nevertheless, it has been noted that these activities often depend on the origin of the rosemary plant and the method of extraction. Since both of these quality parameters can greatly influence the chemical composition of rosemary oil, an original analytical method was developed where "dry distillation" was coupled to headspace solid-phase microextraction (HS-SPME) and then a data mining technique using the Kohonen self-organizing map algorithm was applied to the data obtained. This original approach uses the newly described microwave-accelerated distillation technique (MAD) and HS-SPME; neither of these techniques require external solvent and so this approach provides a novel "green" chemistry sampling method in the field of biological matrix analysis. The large data set obtained was then treated with a rarely used chemometric technique based on nonclassical statistics. Applied to 32 rosemary samples collected at the same time from 12 different sites in the north of Algeria, this method highlighted a strong correlation between the volatile chemical compositions of the samples and their origins, and it therefore allowed the samples to be grouped according to geographical distribution. Moreover, the method allowed us to identify the constituents that exerted the most influence during classification.